mRNA_M-pyrifera_M_contig106515.1404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106515.1404.1
Unique NamemRNA_M-pyrifera_M_contig106515.1404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A7Y2DQH1_9ACTN (4Fe-4S binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DQH1_9ACTN)

HSP 1 Score: 265 bits (677), Expect = 3.520e-87
Identity = 114/143 (79.72%), Postives = 130/143 (90.91%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQPTVTRK 429
            RDYD+CVLCY CV ACGDDAQ +FAIAVSGRGF +RISTEFD+ LPDSACVYCGNC+GVCPTGAIQFK+E+DLRQ GEWR EDQTVT T+CS+CGVGC+LELHVQ++ IVKVTSP DH VT+GHLC+KGRFGW YVQPT+ R+
Sbjct:  148 RDYDKCVLCYKCVEACGDDAQLTFAIAVSGRGFGARISTEFDVTLPDSACVYCGNCVGVCPTGAIQFKTEYDLRQGGEWRPEDQTVTQTVCSYCGVGCNLELHVQDDSIVKVTSPADHSVTHGHLCIKGRFGWTYVQPTIERR 290
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A6B1AYV8_9ACTN (Fe-S-binding domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AYV8_9ACTN)

HSP 1 Score: 263 bits (672), Expect = 1.670e-86
Identity = 116/143 (81.12%), Postives = 130/143 (90.91%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQPTVTRK 429
            RDYD+CVLCY CV ACGDDAQH++AIAVSGRGF +RISTEFD  LPDSACVYCGNCIGVCPTGAIQFK+EFD+R AGEWR ++Q VTTT+CSFCGVGC+LELH Q++RIVKVTSP DH VT+GHLC+KGRFGWQYVQP  TRK
Sbjct:  146 RDYDKCVLCYKCVEACGDDAQHTYAIAVSGRGFGARISTEFDTVLPDSACVYCGNCIGVCPTGAIQFKTEFDMRAAGEWRPDEQDVTTTVCSFCGVGCNLELHTQDDRIVKVTSPADHSVTHGHLCIKGRFGWQYVQPP-TRK 287
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A2D8GHG2_9ACTN (Fe-S-binding domain-containing protein n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GHG2_9ACTN)

HSP 1 Score: 262 bits (670), Expect = 4.070e-86
Identity = 116/145 (80.00%), Postives = 131/145 (90.34%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQP--TVTRK 429
            RDYDRCVLCY CV ACGDDAQH++AIAVSGRGFD+RISTEFD+ LPDSACVYCGNCIGVCPTGAIQFK+E+DLRQA +WR EDQ VT T+CS+CGVGC+LELH Q+++IVKVTSP DH VT+G LC+KGRFGWQYVQP  T TRK
Sbjct:  148 RDYDRCVLCYKCVEACGDDAQHTYAIAVSGRGFDARISTEFDVTLPDSACVYCGNCIGVCPTGAIQFKTEYDLRQADDWRPEDQDVTRTVCSYCGVGCNLELHTQDDKIVKVTSPADHSVTSGMLCIKGRFGWQYVQPVDTPTRK 292
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A6B1EFS2_9ACTN (Fe-S-binding domain-containing protein n=10 Tax=Bacteria TaxID=2 RepID=A0A6B1EFS2_9ACTN)

HSP 1 Score: 262 bits (669), Expect = 4.760e-86
Identity = 110/136 (80.88%), Postives = 127/136 (93.38%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYV 408
            RDY +CVLCY CV ACGDDAQH+FAIAV+GRGFD+RISTEFD+ LPDSACVYCGNC+GVCPTGA+QFK+E+DLR+ GEWR EDQTVT T+CS+CGVGC+L+LHVQ+ERIVKVTSP DH VT+GHLC+KGRFGWQYV
Sbjct:  149 RDYSKCVLCYKCVEACGDDAQHTFAIAVAGRGFDARISTEFDVTLPDSACVYCGNCVGVCPTGALQFKTEYDLREVGEWRPEDQTVTRTVCSYCGVGCNLDLHVQDERIVKVTSPSDHSVTSGHLCIKGRFGWQYV 284
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A7Y2IDQ3_9ACTN (4Fe-4S binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IDQ3_9ACTN)

HSP 1 Score: 260 bits (665), Expect = 2.060e-85
Identity = 111/143 (77.62%), Postives = 129/143 (90.21%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQPTVTRK 429
            RDYD+CVLCY CV ACGDDAQ +FAIAVSGRGF +RISTE+D+ LPDSACVYCGNC+GVCPTGAIQFK+EFDLRQA +W+ E+QT+T TICS+CGVGC+LE+HVQ+  IVKVTSP DH VT+GHLC+KGRFGW YVQPT+ RK
Sbjct:  147 RDYDKCVLCYKCVEACGDDAQLTFAIAVSGRGFGARISTEYDVTLPDSACVYCGNCVGVCPTGAIQFKTEFDLRQAEQWKPEEQTITQTICSYCGVGCNLEMHVQDNTIVKVTSPSDHSVTHGHLCIKGRFGWTYVQPTINRK 289
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A6C7E9L5_ILUCY (Putative formate dehydrogenase iron-sulfur protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E9L5_ILUCY)

HSP 1 Score: 254 bits (650), Expect = 3.900e-83
Identity = 109/139 (78.42%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQPT 417
            RDYD+CVLCY CV ACG++AQ +FAIA+SGRGFD+RISTEFD+ LPDSACVYCGNCIGVCPT A+QFK+EFDLR+AGEWRE++QTVT T+CS+CGVGC+LELHVQ+  IVKVTSP DH VT+GHLCVKGRFGW+YV  T
Sbjct:  151 RDYDKCVLCYKCVDACGEEAQFTFAIAMSGRGFDNRISTEFDVTLPDSACVYCGNCIGVCPTNALQFKTEFDLRRAGEWREDEQTVTRTVCSYCGVGCNLELHVQDNEIVKVTSPADHSVTHGHLCVKGRFGWKYVSAT 289
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A2E4AUM5_9ACTN (Fe-S-binding domain-containing protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4AUM5_9ACTN)

HSP 1 Score: 254 bits (648), Expect = 7.350e-83
Identity = 106/138 (76.81%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQP 414
            RDY+RC+LCY CV ACG+DAQH+FAIA +GRGFD+ ISTEFD+ LPDSACVYCGNCIGVCPTGA+ FK+E D+R+AG W E+DQ VTTT+CSFCGVGC+LELHVQ+E+IVKVTSP DH VT+GHLC+KGRFGWQ+ QP
Sbjct:  150 RDYERCILCYKCVEACGEDAQHTFAIATAGRGFDAHISTEFDVALPDSACVYCGNCIGVCPTGALVFKTEHDMREAGTWNEQDQEVTTTVCSFCGVGCNLELHVQDEKIVKVTSPADHSVTSGHLCIKGRFGWQHAQP 287
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A6B1GDU3_9ACTN (Fe-S-binding domain-containing protein n=5 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1GDU3_9ACTN)

HSP 1 Score: 253 bits (646), Expect = 2.880e-82
Identity = 108/146 (73.97%), Postives = 124/146 (84.93%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQPTVTRKPLS 438
            R YDRCVLCY CV ACGDDAQH+FAIAV+GRGFD+RI TE+D ELPDSACVYCGNC+ VCPTGA+QF++EFDLR  GEWR +DQ VT T+CS+CGVGC+LELHVQ+E IVKVTSP DH VT+GHLC+KGRFGWQYV       P +
Sbjct:  158 RAYDRCVLCYKCVEACGDDAQHTFAIAVAGRGFDARIRTEYDAELPDSACVYCGNCVAVCPTGALQFRTEFDLRAVGEWRPDDQAVTRTVCSYCGVGCNLELHVQDEHIVKVTSPADHSVTSGHLCIKGRFGWQYVHAPAFEPPTT 303
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A7Y1ZXB5_9ACTN (4Fe-4S binding protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZXB5_9ACTN)

HSP 1 Score: 252 bits (644), Expect = 2.980e-82
Identity = 108/136 (79.41%), Postives = 126/136 (92.65%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYV 408
            RDYD+CVLCY CV ACG++AQ +FAIA+SGRG  +RISTEFD+ LPDSACVYCGNCIGVCPT A+QFK+EFDLRQAGEWRE++QTVT T+CS+CGVGC+LELHVQ+ +IVKVTSP DH+VT+GHLCVKGRFGWQYV
Sbjct:  152 RDYDKCVLCYKCVDACGEEAQFTFAIAMSGRGMGNRISTEFDVTLPDSACVYCGNCIGVCPTNALQFKTEFDLRQAGEWREDEQTVTRTVCSYCGVGCNLELHVQDNQIVKVTSPADHEVTHGHLCVKGRFGWQYV 287
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BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Match: A0A3D0TYR3_9ACTN (Fe-S-binding domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D0TYR3_9ACTN)

HSP 1 Score: 251 bits (642), Expect = 1.240e-81
Identity = 105/136 (77.21%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:    1 RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSACVYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSLELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYV 408
            RDYD+C+LCY CV ACGDDAQH+FAIAV+GRGFD+RISTEFD+ELPDSACVYCGNC+ VCPT A+QF +EFDLRQA  WR +DQ+VT T+CS+CGVGC+LELH Q++RIVKVTSP DH VT+GHLC+KGRFGW YV
Sbjct:  132 RDYDKCILCYKCVQACGDDAQHTFAIAVAGRGFDARISTEFDVELPDSACVYCGNCVAVCPTNALQFTTEFDLRQARNWRPDDQSVTRTVCSYCGVGCNLELHTQDDRIVKVTSPTDHSVTSGHLCIKGRFGWDYV 267
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106515.1404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DQH1_9ACTN3.520e-8779.724Fe-4S binding protein n=1 Tax=Acidimicrobiales ba... [more]
A0A6B1AYV8_9ACTN1.670e-8681.12Fe-S-binding domain-containing protein n=1 Tax=Aci... [more]
A0A2D8GHG2_9ACTN4.070e-8680.00Fe-S-binding domain-containing protein n=7 Tax=Aci... [more]
A0A6B1EFS2_9ACTN4.760e-8680.88Fe-S-binding domain-containing protein n=10 Tax=Ba... [more]
A0A7Y2IDQ3_9ACTN2.060e-8577.624Fe-4S binding protein n=1 Tax=Acidimicrobiales ba... [more]
A0A6C7E9L5_ILUCY3.900e-8378.42Putative formate dehydrogenase iron-sulfur protein... [more]
A0A2E4AUM5_9ACTN7.350e-8376.81Fe-S-binding domain-containing protein n=3 Tax=Act... [more]
A0A6B1GDU3_9ACTN2.880e-8273.97Fe-S-binding domain-containing protein n=5 Tax=Aci... [more]
A0A7Y1ZXB5_9ACTN2.980e-8279.414Fe-4S binding protein n=1 Tax=Ilumatobacter sp. T... [more]
A0A3D0TYR3_9ACTN1.240e-8177.21Fe-S-binding domain-containing protein n=1 Tax=Aci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106515contigM-pyrifera_M_contig106515:183..626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score254.2
Seed ortholog evalue3.7e-65
Seed eggNOG ortholog1313172.YM304_30930
Preferred namehoxU
KEGG rclassRC00061,RC02796
KEGG koko:K00123,ko:K05299,ko:K05588
KEGG ReactionR00134,R00519,R11945
KEGG Pathwayko00190,ko00630,ko00680,ko00720,ko01100,ko01120,ko01200,map00190,map00630,map00680,map00720,map01100,map01120,map01200
KEGG ModuleM00377
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2GKBP@201174,COG3383@1,COG3383@2
EC1.17.1.10,1.17.1.9,1.6.5.3
COG Functional cat.C
BiGG ReactioniJN678.hoxU
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.06736-CDS-M-pyrifera_M_contig106515:182..6261622815575.06736-CDS-M-pyrifera_M_contig106515:182..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106515 183..626 -
1692277470.6490042-CDS-M-pyrifera_M_contig106515:182..6261692277470.6490042-CDS-M-pyrifera_M_contig106515:182..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106515 183..626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106515.1404.1prot_M-pyrifera_M_contig106515.1404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106515 183..626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106515.1404.1

>prot_M-pyrifera_M_contig106515.1404.1 ID=prot_M-pyrifera_M_contig106515.1404.1|Name=mRNA_M-pyrifera_M_contig106515.1404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
RDYDRCVLCYTCVSACGDDAQHSFAIAVSGRGFDSRISTEFDIELPDSAC
VYCGNCIGVCPTGAIQFKSEFDLRQAGEWREEDQTVTTTICSFCGVGCSL
ELHVQEERIVKVTSPDDHDVTNGHLCVKGRFGWQYVQPTVTRKPLSR*
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mRNA from alignment at M-pyrifera_M_contig106515:183..626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106515.1404.1 ID=mRNA_M-pyrifera_M_contig106515.1404.1|Name=mRNA_M-pyrifera_M_contig106515.1404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig106515:183..626- (Macrocystis pyrifera P11B4 male)
CGTGACTACGACAGGTGCGTGCTCTGCTACACGTGCGTGTCGGCCTGCGG
CGACGACGCCCAGCACAGCTTCGCCATCGCCGTGTCGGGTCGAGGATTCG
ACTCCCGGATCTCCACCGAGTTCGACATCGAGCTCCCCGACTCGGCCTGC
GTCTACTGCGGCAACTGCATCGGGGTGTGTCCGACCGGCGCCATCCAGTT
CAAGAGCGAGTTCGACCTTCGTCAGGCGGGGGAGTGGCGAGAAGAGGACC
AGACCGTCACCACCACGATCTGCTCGTTCTGCGGCGTCGGATGCAGCCTC
GAGCTGCACGTGCAAGAGGAACGGATCGTGAAGGTGACCTCACCAGACGA
TCACGATGTCACCAACGGCCACCTCTGCGTGAAGGGTCGCTTCGGCTGGC
AATACGTGCAGCCCACGGTGACCCGCAAGCCGCTCAGTCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106515:183..626-

>mRNA_M-pyrifera_M_contig106515.1404.1 ID=mRNA_M-pyrifera_M_contig106515.1404.1|Name=mRNA_M-pyrifera_M_contig106515.1404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig106515:183..626- (Macrocystis pyrifera P11B4 male)
CGTGACTACGACAGGTGCGTGCTCTGCTACACGTGCGTGTCGGCCTGCGG
CGACGACGCCCAGCACAGCTTCGCCATCGCCGTGTCGGGTCGAGGATTCG
ACTCCCGGATCTCCACCGAGTTCGACATCGAGCTCCCCGACTCGGCCTGC
GTCTACTGCGGCAACTGCATCGGGGTGTGTCCGACCGGCGCCATCCAGTT
CAAGAGCGAGTTCGACCTTCGTCAGGCGGGGGAGTGGCGAGAAGAGGACC
AGACCGTCACCACCACGATCTGCTCGTTCTGCGGCGTCGGATGCAGCCTC
GAGCTGCACGTGCAAGAGGAACGGATCGTGAAGGTGACCTCACCAGACGA
TCACGATGTCACCAACGGCCACCTCTGCGTGAAGGGTCGCTTCGGCTGGC
AATACGTGCAGCCCACGGTGACCCGCAAGCCGCTCAGTCGGTGACGTGAC
TACGACAGGTGCGTGCTCTGCTACACGTGCGTGTCGGCCTGCGGCGACGA
CGCCCAGCACAGCTTCGCCATCGCCGTGTCGGGTCGAGGATTCGACTCCC
GGATCTCCACCGAGTTCGACATCGAGCTCCCCGACTCGGCCTGCGTCTAC
TGCGGCAACTGCATCGGGGTGTGTCCGACCGGCGCCATCCAGTTCAAGAG
CGAGTTCGACCTTCGTCAGGCGGGGGAGTGGCGAGAAGAGGACCAGACCG
TCACCACCACGATCTGCTCGTTCTGCGGCGTCGGATGCAGCCTCGAGCTG
CACGTGCAAGAGGAACGGATCGTGAAGGTGACCTCACCAGACGATCACGA
TGTCACCAACGGCCACCTCTGCGTGAAGGGTCGCTTCGGCTGGCAATACG
TGCAGCCCACGGTGACCCGCAAGCCGCTCAGTCGGTGA
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