mRNA_M-pyrifera_M_contig106458.1398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106458.1398.1
Unique NamemRNA_M-pyrifera_M_contig106458.1398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: A0A5A8CFX7_CAFRO (Rieske domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CFX7_CAFRO)

HSP 1 Score: 99.4 bits (246), Expect = 1.310e-22
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   28 YERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPAALAAG 315
            +ER I  + L   G R+C RL SGRGI+LL           +D ACYHHG PL+  DIE+ G  + IVCPWH+YKID+ TGEG+Y+ LD  ALAAG
Sbjct:   13 WERVIPDAALV-EGARKCARLASGRGIMLLRVEGKVH---CMDHACYHHGAPLLHADIEDLGDHKCIVCPWHNYKIDLATGEGVYVGLDSEALAAG 104          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: A0A1W0A1C6_9STRA (Rieske domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1C6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.500e-22
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   64 SGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLD 294
            +G RRC+ L SGR +LL+      +    IDQACYHHGGPL++GDIEE GG+  I CPWH+YKI +  GEG+Y+ LD
Sbjct:   14 NGSRRCIVLPSGRTVLLV---HHKNVVYCIDQACYHHGGPLLTGDIEEIGGKVAIKCPWHNYKIALENGEGLYMGLD 87          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: A0A5D6XYH6_9STRA (Rieske domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYH6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.930e-22
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   28 YERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPAALAAGAGRSAPTTVKSK 351
            +E   +L +L   G RRCV L S +  ++L+  +       +DQACYHHGGPL++GDIEE GG+  + CPWH+Y I V TGEG+Y+ +D A  A G  + +P  VKSK
Sbjct:   15 FEFVCKLEELP-EGARRCVLLPSSKRSVMLM--NLRGKIYCMDQACYHHGGPLMNGDIEEMGGKVTVKCPWHAYHIAVATGEGLYMGMDMALDAHGRSQPSPPKVKSK 119          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: T0QZF8_SAPDV (Rieske domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0QZF8_SAPDV)

HSP 1 Score: 93.6 bits (231), Expect = 7.260e-22
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   64 SGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPA 300
            +G RRC+ L +GR +LL+           IDQACYHHGGPL++GDIEE GG+  I CPWH+YKI +  GEG+Y+ LD A
Sbjct:   15 NGARRCIVLPTGRTVLLV---HHAHVLYCIDQACYHHGGPLLTGDIEEIGGKVAISCPWHNYKIALENGEGLYMGLDAA 90          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: K3WGZ5_GLOUD (Rieske domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGZ5_GLOUD)

HSP 1 Score: 92.8 bits (229), Expect = 2.620e-21
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   67 GGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPAALAAGAGRSAPTTVKSK 351
            G R CV L S +  ++LL          +DQACYHHGGPL++GDIEE GG+  + CPWH+Y I V TGEG+Y+ +D A  + G  + +P  VKSK
Sbjct:   33 GSRHCVLLPSSKRSVMLLHIKGQI--YCMDQACYHHGGPLVNGDIEEMGGKVTVKCPWHAYHIAVETGEGLYMGMDMALDSKGRSQPSPPKVKSK 125          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: A0A1V9ZR69_9STRA (Rieske domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR69_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.380e-21
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   25 EYERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLD 294
            ++E    ++ L  +G RRCV L +GR +LL+           IDQACYHHGGPL++GDIEE GG+  I CPWH+YKI +  GEG+Y+  D
Sbjct:    2 DFEAVCSVNDLP-NGSRRCVVLATGRTVLLV---HHKHALYCIDQACYHHGGPLLTGDIEELGGKVAISCPWHAYKIALDNGEGLYMGFD 87          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: W2QIR0_PHYPN (Rieske domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QIR0_PHYPN)

HSP 1 Score: 91.3 bits (225), Expect = 5.800e-21
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   28 YERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPAALAAGAGRSAPTTVKSK 351
            YE   +LS+L  SG ++CV L +    ++LL  +       +DQACYHHGGPL++GDIEE GG+  I CPWH+Y+I V TGEG+Y  +D +   +G  + +   +KSK
Sbjct:    8 YEFVCKLSELP-SGSKKCVELPTSHRSVMLL--NIRGQVFCMDQACYHHGGPLVNGDIEELGGKVTIKCPWHAYQIAVETGEGLYKGVDMSMTPSGKLQPSSPRLKSK 112          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: A0A225WIF7_9STRA (Rieske domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WIF7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.620e-21
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   28 YERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPA 300
            YE   +LS++  SG ++C+ L++    ++LL  ++      +DQACYHHGGPL++GDIEE GG+  I CPWH+Y I V TGEG+Y  +D A
Sbjct:    8 YEFVCKLSEVP-SGAKKCIELQTSHRSVMLL--NTNGQVFCMDQACYHHGGPLVNGDIEELGGKVTIKCPWHAYHIAVETGEGLYKGVDMA 95          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: D0MRN5_PHYIT (Rieske domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0MRN5_PHYIT)

HSP 1 Score: 91.3 bits (225), Expect = 7.810e-21
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   28 YERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPAALAAGAGRSAPTTVKSK 351
            YE   +LS+L  SG ++CV L +    ++LL  +       +DQACYHHGGPL++GDIEE GG+ ++ CPWH+++I V TGEG+Y  +D     +G  + +   VKSK
Sbjct:    8 YEFVCKLSELP-SGSKKCVELPASHRSVMLL--NVRGQVFCMDQACYHHGGPLVNGDIEELGGKVILKCPWHAFRIAVETGEGLYKGVDMTMTPSGKLQPSSPRVKSK 112          
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Match: G4ZNX3_PHYSP (Rieske domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZNX3_PHYSP)

HSP 1 Score: 89.7 bits (221), Expect = 3.030e-20
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   28 YERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLAIDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPAALAAGAGRSAPTTVKSK 351
            YE   +L +L  SG ++CV L +    ++LL  +       +DQACYHHGGPL++GDIEE GG+  I CPWH+Y I V TGEG+Y  +D A   +G  + +   +KSK
Sbjct:    7 YEFVCKLLELP-SGSKKCVELPTSHRSVMLL--NIRGQVFCMDQACYHHGGPLVNGDIEEMGGKTTIKCPWHAYHIAVETGEGLYKGVDMAMTPSGKLQPSSPRLKSK 111          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106458.1398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CFX7_CAFRO1.310e-2253.13Rieske domain-containing protein n=4 Tax=Cafeteria... [more]
A0A1W0A1C6_9STRA2.500e-2255.84Rieske domain-containing protein n=1 Tax=Thraustot... [more]
A0A5D6XYH6_9STRA3.930e-2246.30Rieske domain-containing protein n=1 Tax=Pythium b... [more]
T0QZF8_SAPDV7.260e-2254.43Rieske domain-containing protein n=3 Tax=Saprolegn... [more]
K3WGZ5_GLOUD2.620e-2148.42Rieske domain-containing protein n=1 Tax=Globispor... [more]
A0A1V9ZR69_9STRA5.380e-2148.89Rieske domain-containing protein n=1 Tax=Achlya hy... [more]
W2QIR0_PHYPN5.800e-2144.44Rieske domain-containing protein n=8 Tax=Phytophth... [more]
A0A225WIF7_9STRA7.620e-2147.25Rieske domain-containing protein n=1 Tax=Phytophth... [more]
D0MRN5_PHYIT7.810e-2143.52Rieske domain-containing protein n=12 Tax=Phytopht... [more]
G4ZNX3_PHYSP3.030e-2044.44Rieske domain-containing protein n=3 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106458contigM-pyrifera_M_contig106458:276..626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog42099.EPrPV00000018324
Preferred nameRFESD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rieske (Fe-S) domain containing. Source PGD
EggNOG OGs1MD6X@121069,2B00U@1,2S06W@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.5946822-CDS-M-pyrifera_M_contig106458:275..6261622815574.5946822-CDS-M-pyrifera_M_contig106458:275..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106458 276..626 +
1692277470.3831563-CDS-M-pyrifera_M_contig106458:275..6261692277470.3831563-CDS-M-pyrifera_M_contig106458:275..626Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106458 276..626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106458.1398.1prot_M-pyrifera_M_contig106458.1398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106458 276..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106458.1398.1

>prot_M-pyrifera_M_contig106458.1398.1 ID=prot_M-pyrifera_M_contig106458.1398.1|Name=mRNA_M-pyrifera_M_contig106458.1398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MADGGGSGEYERTIELSQLRRSGGRRCVRLRSGRGILLLLPPSSPSTPLA
IDQACYHHGGPLISGDIEECGGREVIVCPWHSYKIDVRTGEGIYLSLDPA
ALAAGAGRSAPTTVKSK
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mRNA from alignment at M-pyrifera_M_contig106458:276..626+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106458.1398.1 ID=mRNA_M-pyrifera_M_contig106458.1398.1|Name=mRNA_M-pyrifera_M_contig106458.1398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig106458:276..626+ (Macrocystis pyrifera P11B4 male)
ATGGCAGATGGTGGTGGCAGTGGGGAGTATGAGCGCACGATTGAGCTTTC TCAGTTGCGCCGGAGTGGAGGTCGTCGTTGTGTGCGTTTGCGAAGTGGGC GAGGTATTTTATTGCTCCTCCCACCTTCTTCTCCTTCCACGCCCCTTGCA ATTGATCAGGCTTGCTATCACCACGGTGGACCTCTGATTTCAGGCGATAT TGAGGAGTGTGGGGGGAGAGAGGTGATCGTTTGTCCCTGGCACTCGTACA AAATTGACGTCAGAACCGGAGAAGGAATCTACCTCTCCCTTGACCCTGCT GCACTGGCTGCTGGTGCTGGACGCTCTGCTCCCACCACTGTGAAATCCAA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106458:276..626+

>mRNA_M-pyrifera_M_contig106458.1398.1 ID=mRNA_M-pyrifera_M_contig106458.1398.1|Name=mRNA_M-pyrifera_M_contig106458.1398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig106458:276..626+ (Macrocystis pyrifera P11B4 male)
ATGGCAGATGGTGGTGGCAGTGGGGAGTATGAGCGCACGATTGAGCTTTC
TCAGTTGCGCCGGAGTGGAGGTCGTCGTTGTGTGCGTTTGCGAAGTGGGC
GAGGTATTTTATTGCTCCTCCCACCTTCTTCTCCTTCCACGCCCCTTGCA
ATTGATCAGGCTTGCTATCACCACGGTGGACCTCTGATTTCAGGCGATAT
TGAGGAGTGTGGGGGGAGAGAGGTGATCGTTTGTCCCTGGCACTCGTACA
AAATTGACGTCAGAACCGGAGAAGGAATCTACCTCTCCCTTGACCCTGCT
GCACTGGCTGCTGGTGCTGGACGCTCTGCTCCCACCACTGTGAAATCCAA
AATGGCAGATGGTGGTGGCAGTGGGGAGTATGAGCGCACGATTGAGCTTT
CTCAGTTGCGCCGGAGTGGAGGTCGTCGTTGTGTGCGTTTGCGAAGTGGG
CGAGGTATTTTATTGCTCCTCCCACCTTCTTCTCCTTCCACGCCCCTTGC
AATTGATCAGGCTTGCTATCACCACGGTGGACCTCTGATTTCAGGCGATA
TTGAGGAGTGTGGGGGGAGAGAGGTGATCGTTTGTCCCTGGCACTCGTAC
AAAATTGACGTCAGAACCGGAGAAGGAATCTACCTCTCCCTTGACCCTGC
TGCACTGGCTGCTGGTGCTGGACGCTCTGCTCCCACCACTGTGAAATCCA
AA
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