mRNA_M-pyrifera_M_contig10613.1326.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10613.1326.1
Unique NamemRNA_M-pyrifera_M_contig10613.1326.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.760e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS+VE V SDNG EF    F ++ N   I++E TP  SP+++G  ER
Sbjct:   28 SFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 85
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BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.430e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS+VE V SDNG EF    F ++ N   I++E TP  SP+++G  ER
Sbjct:  680 SFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737
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BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.450e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS+VE V SDNG EF    F ++ N   I++E TP  SP+++G  ER
Sbjct:  284 SFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 341
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.450e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS+VE V SDNG EF    F ++ N   I++E TP  SP+++G  ER
Sbjct:  481 SFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.450e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS+VE V SDNG EF    F ++ N   I++E TP  SP+++G  ER
Sbjct:  378 SFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAER 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: UPI001F3B8A25 (hypothetical protein n=1 Tax=Neisseria elongata TaxID=495 RepID=UPI001F3B8A25)

HSP 1 Score: 56.6 bits (135), Expect = 6.660e-9
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 AKFLSGIRADGCPSIVECVGSDNGTEF---LNAGFVALLNSHGIRREHTPIASPKHDGAVERRIACTLEL 201
            AKFL+G   D CP ++ECV SDNGTE+    N  F      +GI ++ T +A P+ +G  ER I   +E+
Sbjct:   10 AKFLTGHLIDPCPYLIECVYSDNGTEYKGSANHAFGVACYENGIGQKFTRVARPQTNGKAERAIRTLMEM 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5KKZ9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.730e-9
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL G+RADG PS+VE V SDNG E     F ++ N   I++E TP  SP+++G  ER
Sbjct:   28 SFLVGVRADGIPSLVEIVRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAER 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5KN22_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN22_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.370e-9
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL G+RADG PS+VE V SDNG E     F ++ N   I++E TP  SP+++G  ER
Sbjct:   63 SFLVGVRADGIPSLVEIVRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAER 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.540e-9
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS++E V SDNG EF    F ++ N   I++E TP  SP+ +G  ER
Sbjct:  525 SFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 582
[Close]
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.550e-9
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 KFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIASPKHDGAVER 177
             FL+ +RADG PS++E V SDNG EF    F ++ N   I++E TP  SP+ +G  ER
Sbjct:  501 SFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10613.1326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWE4_9PHAE1.760e-948.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE2.430e-948.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE2.450e-948.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.450e-948.28Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE2.450e-948.28Integrase catalytic domain-containing protein n=1 ... [more]
UPI001F3B8A256.660e-941.43hypothetical protein n=1 Tax=Neisseria elongata Ta... [more]
A0A6H5KKZ9_9PHAE7.730e-948.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KN22_9PHAE8.370e-948.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE8.540e-946.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE8.550e-946.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10613contigM-pyrifera_M_contig10613:5514..5714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.1955674-CDS-M-pyrifera_M_contig10613:5513..57141622815571.1955674-CDS-M-pyrifera_M_contig10613:5513..5714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10613 5514..5714 -
1692277468.861022-CDS-M-pyrifera_M_contig10613:5513..57141692277468.861022-CDS-M-pyrifera_M_contig10613:5513..5714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10613 5514..5714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10613.1326.1prot_M-pyrifera_M_contig10613.1326.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10613 5514..5714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10613.1326.1

>prot_M-pyrifera_M_contig10613.1326.1 ID=prot_M-pyrifera_M_contig10613.1326.1|Name=mRNA_M-pyrifera_M_contig10613.1326.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
AKFLSGIRADGCPSIVECVGSDNGTEFLNAGFVALLNSHGIRREHTPIAS
PKHDGAVERRIACTLEL
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mRNA from alignment at M-pyrifera_M_contig10613:5514..5714-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10613.1326.1 ID=mRNA_M-pyrifera_M_contig10613.1326.1|Name=mRNA_M-pyrifera_M_contig10613.1326.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig10613:5514..5714- (Macrocystis pyrifera P11B4 male)
GCTAAATTCCTATCCGGCATCCGTGCTGATGGCTGCCCGTCCATCGTGGA
GTGCGTCGGTTCGGACAACGGTACCGAGTTTCTCAACGCGGGGTTCGTGG
CGTTGCTCAACAGCCACGGTATCCGTCGAGAGCACACGCCCATTGCCTCT
CCGAAGCACGATGGTGCGGTTGAGCGACGCATCGCATGCACGCTGGAGCT
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10613:5514..5714-

>mRNA_M-pyrifera_M_contig10613.1326.1 ID=mRNA_M-pyrifera_M_contig10613.1326.1|Name=mRNA_M-pyrifera_M_contig10613.1326.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig10613:5514..5714- (Macrocystis pyrifera P11B4 male)
GCTAAATTCCTATCCGGCATCCGTGCTGATGGCTGCCCGTCCATCGTGGA
GTGCGTCGGTTCGGACAACGGTACCGAGTTTCTCAACGCGGGGTTCGTGG
CGTTGCTCAACAGCCACGGTATCCGTCGAGAGCACACGCCCATTGCCTCT
CCGAAGCACGATGGTGCGGTTGAGCGACGCATCGCATGCACGCTGGAGCT
TGCTAAATTCCTATCCGGCATCCGTGCTGATGGCTGCCCGTCCATCGTGG
AGTGCGTCGGTTCGGACAACGGTACCGAGTTTCTCAACGCGGGGTTCGTG
GCGTTGCTCAACAGCCACGGTATCCGTCGAGAGCACACGCCCATTGCCTC
TCCGAAGCACGATGGTGCGGTTGAGCGACGCATCGCATGCACGCTGGAGC
TT
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