mRNA_M-pyrifera_M_contig106033.1303.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106033.1303.1
Unique NamemRNA_M-pyrifera_M_contig106033.1303.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106033.1303.1 vs. uniprot
Match: A0A7S1UJW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJW6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.460e-15
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:  139 ALRKALARNSTLVHVDMRINNFTETDRMHLARGLAHNHTLLGLHAGGSSRGVDPRGFITSSDKDAFKSNPEELHAAVFTRIVGLRTQGGEEWGEKDNCWICEKWR 453
            AL K+L +N TL H+++  N  +E D   +A+ L  NH L+GLH  G+   VD  GF+   D + + S  E  H   FTRI+  +  G E W ++ NCW+CEKWR
Sbjct:  565 ALAKSLRQNKTLTHLNVGHNQLSERDCRLMAQCLRENHILMGLHVEGNYAEVDAHGFLIP-DAEVWPS--ETSHC--FTRILAPQVVGRENWSQRSNCWLCEKWR 664
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BLAST of mRNA_M-pyrifera_M_contig106033.1303.1 vs. uniprot
Match: F0Y1K2_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1K2_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.060e-9
Identity = 48/161 (29.81%), Postives = 73/161 (45.34%), Query Frame = 1 
Query:    1 LDVSWNKLSGDGAIRFSIGLQQAASLETLDMSWNGFGA--SPDAAVSKALRKALARNSTLVHVDMRINNFTETDRMHLARGLAHNHTLLGLHAGGSSRGVDPRGFITSSDKDAFKSNPEEL--HAAVFTRIVGLR-TQGGEEWGEKDNCWICEKWRESKYV 468
            L ++W  L G+GA   + GL   +++ T D+ WN      S   A   AL +   +N  L+H+D+R N     D   +   +  N  L    AG    G D R F    D       P  +   A V+TR++G +      +W     CWIC++WRE+K+V
Sbjct: 1349 LRLAWTGLGGEGAAALASGLG-GSNVATCDLGWNALRTDDSNGGAPVAALCEKTLKNEALLHLDLRYNQLAGDDLRAIEAAVQGNAALARALAGLHLEGNDFRTF----DGPFLAPPPPAVVGDARVYTRVLGTKHVPQSPDWNCGLACWICDRWRETKFV 1504
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106033.1303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1UJW6_9STRA2.460e-1540.95Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0Y1K2_AURAN1.060e-929.81Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106033contigM-pyrifera_M_contig106033:16..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue5.9e-13
Seed eggNOG ortholog5911.EAS06066
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine Rich Repeat family protein
EggNOG OGs3ZDMU@5878,KOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.118444-CDS-M-pyrifera_M_contig106033:15..4831622815570.118444-CDS-M-pyrifera_M_contig106033:15..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106033 16..483 +
1692277468.4403389-CDS-M-pyrifera_M_contig106033:15..4831692277468.4403389-CDS-M-pyrifera_M_contig106033:15..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106033 16..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106033.1303.1prot_M-pyrifera_M_contig106033.1303.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106033 16..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106033.1303.1

>prot_M-pyrifera_M_contig106033.1303.1 ID=prot_M-pyrifera_M_contig106033.1303.1|Name=mRNA_M-pyrifera_M_contig106033.1303.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
LDVSWNKLSGDGAIRFSIGLQQAASLETLDMSWNGFGASPDAAVSKALRK
ALARNSTLVHVDMRINNFTETDRMHLARGLAHNHTLLGLHAGGSSRGVDP
RGFITSSDKDAFKSNPEELHAAVFTRIVGLRTQGGEEWGEKDNCWICEKW
RESKYV
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mRNA from alignment at M-pyrifera_M_contig106033:16..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106033.1303.1 ID=mRNA_M-pyrifera_M_contig106033.1303.1|Name=mRNA_M-pyrifera_M_contig106033.1303.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig106033:16..483+ (Macrocystis pyrifera P11B4 male)
CTGGATGTGTCCTGGAACAAGCTGTCTGGAGATGGCGCCATTCGCTTCAG
CATTGGTCTGCAACAGGCTGCTTCGCTAGAGACACTGGACATGTCCTGGA
ACGGATTTGGAGCGTCTCCCGACGCCGCGGTTTCAAAGGCTCTGCGCAAA
GCGCTGGCTCGTAACTCTACTCTTGTCCACGTGGACATGCGCATCAACAA
CTTCACAGAGACTGACCGCATGCACTTGGCGCGAGGCCTGGCTCACAATC
ACACGCTGTTGGGCCTGCACGCTGGCGGCAGCAGCCGTGGGGTGGACCCG
CGTGGGTTCATTACGAGCAGTGACAAGGACGCGTTCAAGTCGAACCCAGA
GGAGCTGCATGCGGCAGTGTTCACGCGCATCGTTGGACTGCGAACGCAGG
GGGGGGAGGAGTGGGGCGAGAAAGACAACTGCTGGATTTGCGAGAAATGG
AGGGAGAGCAAGTACGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106033:16..483+

>mRNA_M-pyrifera_M_contig106033.1303.1 ID=mRNA_M-pyrifera_M_contig106033.1303.1|Name=mRNA_M-pyrifera_M_contig106033.1303.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig106033:16..483+ (Macrocystis pyrifera P11B4 male)
CTGGATGTGTCCTGGAACAAGCTGTCTGGAGATGGCGCCATTCGCTTCAG
CATTGGTCTGCAACAGGCTGCTTCGCTAGAGACACTGGACATGTCCTGGA
ACGGATTTGGAGCGTCTCCCGACGCCGCGGTTTCAAAGGCTCTGCGCAAA
GCGCTGGCTCGTAACTCTACTCTTGTCCACGTGGACATGCGCATCAACAA
CTTCACAGAGACTGACCGCATGCACTTGGCGCGAGGCCTGGCTCACAATC
ACACGCTGTTGGGCCTGCACGCTGGCGGCAGCAGCCGTGGGGTGGACCCG
CGTGGGTTCATTACGAGCAGTGACAAGGACGCGTTCAAGTCGAACCCAGA
GGAGCTGCATGCGGCAGTGTTCACGCGCATCGTTGGACTGCGAACGCAGG
GGGGGGAGGAGTGGGGCGAGAAAGACAACTGCTGGATTTGCGAGAAATGG
AGGGAGAGCAAGTACGTTCTGGATGTGTCCTGGAACAAGCTGTCTGGAGA
TGGCGCCATTCGCTTCAGCATTGGTCTGCAACAGGCTGCTTCGCTAGAGA
CACTGGACATGTCCTGGAACGGATTTGGAGCGTCTCCCGACGCCGCGGTT
TCAAAGGCTCTGCGCAAAGCGCTGGCTCGTAACTCTACTCTTGTCCACGT
GGACATGCGCATCAACAACTTCACAGAGACTGACCGCATGCACTTGGCGC
GAGGCCTGGCTCACAATCACACGCTGTTGGGCCTGCACGCTGGCGGCAGC
AGCCGTGGGGTGGACCCGCGTGGGTTCATTACGAGCAGTGACAAGGACGC
GTTCAAGTCGAACCCAGAGGAGCTGCATGCGGCAGTGTTCACGCGCATCG
TTGGACTGCGAACGCAGGGGGGGGAGGAGTGGGGCGAGAAAGACAACTGC
TGGATTTGCGAGAAATGGAGGGAGAGCAAGTACGTT
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