mRNA_M-pyrifera_M_contig106011.1289.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106011.1289.1
Unique NamemRNA_M-pyrifera_M_contig106011.1289.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A2K1KPZ2_PHYPA (RAB3GAP2_N domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KPZ2_PHYPA)

HSP 1 Score: 102 bits (255), Expect = 6.720e-23
Identity = 51/121 (42.15%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKS-----RRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLV 348
            + +L+D+ RK   + V   G LAA+AD+LGRV+LVD+  +  +++R+WKGYR+A   F ++P+   +     +K      R+QY+L LAI+APRRG++E+W+MR+G R A++  G++CRL+
Sbjct:  315 ITSLKDNMRKGERLAVAPGGSLAAIADSLGRVLLVDVNAV--VVVRLWKGYRDAHCLFLEAPVDGSADYADPQKKHLSLRRQQYRLCLAIHAPRRGVIEIWQMRHGGRVAVIRDGESCRLL 433          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: S1S406_THECC (Rab3 GTPase-activating protein non-catalytic subunit isoform 2 n=1 Tax=Theobroma cacao TaxID=3641 RepID=S1S406_THECC)

HSP 1 Score: 99.0 bits (245), Expect = 8.540e-23
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPE---SGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL-STHTPSRCFLVVGE 420
            +  L+D  RK   + +  +G LAA+ D+LGR++L+D   L  +++R+WKGYR+A   F +  +  E   SG+   E  +  Y L LAI+APR+G++EVW+MR G R   +   K CRL+  TS  G  L S + P    L+ G+
Sbjct:   86 LTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCFFMEMLVNKEAIGSGSSYYEPGKSDYCLCLAIHAPRKGIVEVWQMRTGPRLLTIQCAKGCRLLQPTSRFGSSLDSPYVPLEVVLLNGD 227          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A2P6MTR6_9EUKA (RAB3GAP2_N domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MTR6_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 3.780e-22
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    7 ALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRLSTHTPSRCFLVVGEG 423
            ++ D  R+  ++  D TGRLA + D   RV+L+D   +  +L+RMWKGYREAQ AF    +   SG            LFLAIYAPRRGLLEVW +R+G R   + VGK  +L+  ++P+G         R + V  +G
Sbjct:  314 SISDPPREVTSLSTDPTGRLAVLTDTFNRVILLDC--VHSILLRMWKGYREAQTAFIGCDIGGPSG-----------MLFLAIYAPRRGLLEVWRLRSGERVGAVEVGKGGKLLQTSTPVGSSTEKFVQPRAYFVGVDG 439          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: D8QPP3_SELML (RAB3GAP2_N domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPP3_SELML)

HSP 1 Score: 99.0 bits (245), Expect = 1.430e-21
Identity = 54/147 (36.73%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKS-RRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGK------RLSTHTPSRCFLVVGE 420
            + AL+DS RK  ++ +  T  LAA+ D+LGRV+LVD+  L  +++R+WKGYR+A   F ++PL   SG        +  + L LAI+APRR ++EVW++RNG R ++++  ++CRL+   S             +++P   FL+ G+
Sbjct:  302 ITALKDSPRKGESLALSPTCSLAAVTDSLGRVLLVDVHAL--VVVRLWKGYRDAHCKFLEAPLNGSSGLQHRSSCVKEDFSLCLAIHAPRRAVVEVWQLRNGPRLSVIHCSESCRLLQPPSQFWSSDRNDHEEESYSPKLVFLLKGD 446          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A176W4F2_MARPO (RAB3GAP2_N domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W4F2_MARPO)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-21
Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRR------QYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVT 357
            +  L+D  RK L++ +  +G LAA+ D+LGR+ L+D+  L  +++R+WKGYREA   F ++P+   +    V+  RR      +++L LAI+APRRG++EVW+MR G R  I+   + CRL+  T
Sbjct:  304 ITTLRDKQRKGLSLALSSSGSLAAVTDSLGRISLIDVQAL--VVVRLWKGYREAHCVFLEAPVDGRAEYEIVQSRRRRRFVRDEFKLCLAIHAPRRGVVEVWQMRYGARLMIVKCTEGCRLLQPT 426          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A4Y1QWL9_PRUDU (RAB3GAP2_N domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWL9_PRUDU)

HSP 1 Score: 96.3 bits (238), Expect = 1.450e-20
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPL---TPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL-STHTPSRCFLVVGE 420
            +  L+D  RK   + +  +G LAA+ D+LGR++L+D   L  +++R+WKGYR+A   F +      T  SG+G  E ++  Y L LAI+APR+G++E+W+MR G R       K  +L+  T   G  + ST+ P   FL+ G+
Sbjct:  322 LTCLKDFPRKGEKLTLSPSGTLAAITDSLGRILLLDTQAL--VIVRLWKGYRDASCLFMEMLAKKDTAASGSGYYEPTKSDYCLCLAIHAPRKGIVEIWQMRTGPRLRSFQCAKGSKLLQPTYRFGSSIASTYVPLEVFLLNGD 463          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A2C9W8A8_MANES (RAB3GAP2_N domain-containing protein n=2 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9W8A8_MANES)

HSP 1 Score: 95.9 bits (237), Expect = 1.810e-20
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGA----VEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL-STHTPSRCFLVVGE 420
            +  L+D  RK   + +  +G L+A+ D+LGR++L+D   L  +++R+WKGYR+A   FF   L     AGA     E S+  Y L LAI+APR+G++EVW+MR G R   +  G+  +L+  T   G  L S + P   FL+ G+
Sbjct:  301 LTCLKDHPRKGEKLTLSPSGTLSAITDSLGRILLLDTQAL--VVVRLWKGYRDAS-CFFMEMLVKRDNAGASSSYYEPSKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCGRGSKLLQPTYRFGSSLDSPYVPLEVFLLNGD 442          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A674NR65_TAKRU (Uncharacterized protein n=7 Tax=Takifugu TaxID=31032 RepID=A0A674NR65_TAKRU)

HSP 1 Score: 96.3 bits (238), Expect = 2.110e-20
Identity = 60/142 (42.25%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   10 LQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRL---------VNVTSPMGKRLSTHTPSRCFL 408
            L DS R   ++ +     LA + D  GRV L+DLA    + IRMWKGYR+AQ+ + Q  +  E G        +++ LFL IYAPRRG+LEVW M+ G R    NVGK+CRL         VN  +  G  L  HTP  C L
Sbjct:  447 LPDSRRHGESICLSPCNMLAGVTDDFGRVALLDLAR--GICIRMWKGYRDAQLGWLQ--VQEERGDHDSSSLPKRHALFLVIYAPRRGILEVWAMKQGPRVGAFNVGKHCRLLYAGHRLMGVNCVTSQGWHL--HTPKVCLL 582          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A5C6NXM4_9TELE (Rab3 GTPase-activating protein non-catalytic subunit n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NXM4_9TELE)

HSP 1 Score: 95.9 bits (237), Expect = 2.850e-20
Identity = 59/142 (41.55%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   10 LQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRL---------VNVTSPMGKRLSTHTPSRCFL 408
            L DS R   ++ +     LA + D  GRV L+DLA    + IRMWKGYR+AQ+ + Q  +  E G        +++ LFL IYAPRRG+LEVW M+ G R    N+GK+CRL         VN  +  G  L  HTP  C L
Sbjct:  376 LPDSRRHGESICLSPCNMLAGVTDDFGRVALLDLAR--GICIRMWKGYRDAQLGWLQ--VQEERGDHDSSSLPKRHALFLVIYAPRRGILEVWAMKQGPRVGAFNIGKHCRLLYAGHRLMGVNCVTSQGWHL--HTPKVCLL 511          
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A6L2K670_TANCI (Rab3 GTPase-activating protein non-catalytic subunit (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K670_TANCI)

HSP 1 Score: 89.7 bits (221), Expect = 9.660e-20
Identity = 49/142 (34.51%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL--STHTPSRCFLVVGE 420
            +  L+D  RK   + +  +G LAA+ D+LGR+ML+D   L  +++R+WKGYR+A   F +  +  +S  G V   +  Y L LAI+APR+G++E+W+MR G R   +   K  +++  T   G  +  S++ P   F + G+
Sbjct:   39 LTCLKDHPRKGEKLTLSPSGTLAAITDSLGRIMLLDTRAL--VVVRLWKGYRDANCLFVERLVNKDSEGGRVHV-KNDYSLCLAIHAPRKGIVEIWQMRTGPRILTIPCPKGSKILQPTYRFGSTVASSSYKPLEVFFLNGD 177          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K1KPZ2_PHYPA6.720e-2342.15RAB3GAP2_N domain-containing protein n=3 Tax=Physc... [more]
S1S406_THECC8.540e-2338.19Rab3 GTPase-activating protein non-catalytic subun... [more]
A0A2P6MTR6_9EUKA3.780e-2240.29RAB3GAP2_N domain-containing protein n=1 Tax=Plano... [more]
D8QPP3_SELML1.430e-2136.73RAB3GAP2_N domain-containing protein n=2 Tax=Selag... [more]
A0A176W4F2_MARPO1.530e-2140.00RAB3GAP2_N domain-containing protein n=2 Tax=March... [more]
A0A4Y1QWL9_PRUDU1.450e-2036.81RAB3GAP2_N domain-containing protein (Fragment) n=... [more]
A0A2C9W8A8_MANES1.810e-2037.93RAB3GAP2_N domain-containing protein n=2 Tax=Croto... [more]
A0A674NR65_TAKRU2.110e-2042.25Uncharacterized protein n=7 Tax=Takifugu TaxID=310... [more]
A0A5C6NXM4_9TELE2.850e-2041.55Rab3 GTPase-activating protein non-catalytic subun... [more]
A0A6L2K670_TANCI9.660e-2034.51Rab3 GTPase-activating protein non-catalytic subun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106011contigM-pyrifera_M_contig106011:205..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.4
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog3218.PP1S60_317V6.1
KEGG koko:K19937
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab3 gtpase-activating protein non-catalytic
EggNOG OGs37HZW@33090,3GBCV@35493,KOG2727@1,KOG2727@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.4888494-CDS-M-pyrifera_M_contig106011:204..6271622815569.4888494-CDS-M-pyrifera_M_contig106011:204..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106011 205..627 -
1692277468.1861055-CDS-M-pyrifera_M_contig106011:204..6271692277468.1861055-CDS-M-pyrifera_M_contig106011:204..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106011 205..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106011.1289.1prot_M-pyrifera_M_contig106011.1289.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106011 205..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106011.1289.1

>prot_M-pyrifera_M_contig106011.1289.1 ID=prot_M-pyrifera_M_contig106011.1289.1|Name=mRNA_M-pyrifera_M_contig106011.1289.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKG
YREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRN
GNRQAILNVGKNCRLVNVTSPMGKRLSTHTPSRCFLVVGEG
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mRNA from alignment at M-pyrifera_M_contig106011:205..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106011.1289.1 ID=mRNA_M-pyrifera_M_contig106011.1289.1|Name=mRNA_M-pyrifera_M_contig106011.1289.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig106011:205..627- (Macrocystis pyrifera P11B4 male)
GTGAATGCTCTCCAAGACTCGACGAGGAAAGCACTCACTGTGGTGGTGGA CGGCACTGGCCGACTGGCGGCCATGGCAGACGCCTTGGGCAGAGTAATGC TCGTGGACCTGGCGACGCTCCCGCCCATGCTGATTAGGATGTGGAAGGGC TATCGAGAGGCCCAGATGGCGTTCTTTCAGTCGCCTCTGACGCCAGAGTC GGGCGCAGGAGCAGTTGAAAAGAGCAGGCGACAGTACCAGCTCTTTCTCG CCATCTACGCGCCCAGGCGAGGACTACTCGAGGTGTGGGAGATGAGGAAC GGCAACAGACAAGCAATTCTCAATGTGGGAAAGAATTGCCGCCTCGTCAA CGTCACCAGCCCTATGGGGAAGCGGCTGTCGACCCACACGCCCAGCAGGT GCTTCCTGGTTGTTGGTGAGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106011:205..627-

>mRNA_M-pyrifera_M_contig106011.1289.1 ID=mRNA_M-pyrifera_M_contig106011.1289.1|Name=mRNA_M-pyrifera_M_contig106011.1289.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig106011:205..627- (Macrocystis pyrifera P11B4 male)
GTGAATGCTCTCCAAGACTCGACGAGGAAAGCACTCACTGTGGTGGTGGA
CGGCACTGGCCGACTGGCGGCCATGGCAGACGCCTTGGGCAGAGTAATGC
TCGTGGACCTGGCGACGCTCCCGCCCATGCTGATTAGGATGTGGAAGGGC
TATCGAGAGGCCCAGATGGCGTTCTTTCAGTCGCCTCTGACGCCAGAGTC
GGGCGCAGGAGCAGTTGAAAAGAGCAGGCGACAGTACCAGCTCTTTCTCG
CCATCTACGCGCCCAGGCGAGGACTACTCGAGGTGTGGGAGATGAGGAAC
GGCAACAGACAAGCAATTCTCAATGTGGGAAAGAATTGCCGCCTCGTCAA
CGTCACCAGCCCTATGGGGAAGCGGCTGTCGACCCACACGCCCAGCAGGT
GCTTCCTGGTTGTTGGTGAGGGCGTGAATGCTCTCCAAGACTCGACGAGG
AAAGCACTCACTGTGGTGGTGGACGGCACTGGCCGACTGGCGGCCATGGC
AGACGCCTTGGGCAGAGTAATGCTCGTGGACCTGGCGACGCTCCCGCCCA
TGCTGATTAGGATGTGGAAGGGCTATCGAGAGGCCCAGATGGCGTTCTTT
CAGTCGCCTCTGACGCCAGAGTCGGGCGCAGGAGCAGTTGAAAAGAGCAG
GCGACAGTACCAGCTCTTTCTCGCCATCTACGCGCCCAGGCGAGGACTAC
TCGAGGTGTGGGAGATGAGGAACGGCAACAGACAAGCAATTCTCAATGTG
GGAAAGAATTGCCGCCTCGTCAACGTCACCAGCCCTATGGGGAAGCGGCT
GTCGACCCACACGCCCAGCAGGTGCTTCCTGGTTGTTGGTGAGGGC
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