mRNA_M-pyrifera_M_contig106011.1289.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A2K1KPZ2_PHYPA (RAB3GAP2_N domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KPZ2_PHYPA) HSP 1 Score: 102 bits (255), Expect = 6.720e-23 Identity = 51/121 (42.15%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKS-----RRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLV 348
+ +L+D+ RK + V G LAA+AD+LGRV+LVD+ + +++R+WKGYR+A F ++P+ + +K R+QY+L LAI+APRRG++E+W+MR+G R A++ G++CRL+
Sbjct: 315 ITSLKDNMRKGERLAVAPGGSLAAIADSLGRVLLVDVNAV--VVVRLWKGYRDAHCLFLEAPVDGSADYADPQKKHLSLRRQQYRLCLAIHAPRRGVIEIWQMRHGGRVAVIRDGESCRLL 433
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: S1S406_THECC (Rab3 GTPase-activating protein non-catalytic subunit isoform 2 n=1 Tax=Theobroma cacao TaxID=3641 RepID=S1S406_THECC) HSP 1 Score: 99.0 bits (245), Expect = 8.540e-23 Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPE---SGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL-STHTPSRCFLVVGE 420
+ L+D RK + + +G LAA+ D+LGR++L+D L +++R+WKGYR+A F + + E SG+ E + Y L LAI+APR+G++EVW+MR G R + K CRL+ TS G L S + P L+ G+
Sbjct: 86 LTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCFFMEMLVNKEAIGSGSSYYEPGKSDYCLCLAIHAPRKGIVEVWQMRTGPRLLTIQCAKGCRLLQPTSRFGSSLDSPYVPLEVVLLNGD 227
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A2P6MTR6_9EUKA (RAB3GAP2_N domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MTR6_9EUKA) HSP 1 Score: 100 bits (249), Expect = 3.780e-22 Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 7 ALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRLSTHTPSRCFLVVGEG 423
++ D R+ ++ D TGRLA + D RV+L+D + +L+RMWKGYREAQ AF + SG LFLAIYAPRRGLLEVW +R+G R + VGK +L+ ++P+G R + V +G
Sbjct: 314 SISDPPREVTSLSTDPTGRLAVLTDTFNRVILLDC--VHSILLRMWKGYREAQTAFIGCDIGGPSG-----------MLFLAIYAPRRGLLEVWRLRSGERVGAVEVGKGGKLLQTSTPVGSSTEKFVQPRAYFVGVDG 439
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: D8QPP3_SELML (RAB3GAP2_N domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPP3_SELML) HSP 1 Score: 99.0 bits (245), Expect = 1.430e-21 Identity = 54/147 (36.73%), Postives = 89/147 (60.54%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKS-RRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGK------RLSTHTPSRCFLVVGE 420
+ AL+DS RK ++ + T LAA+ D+LGRV+LVD+ L +++R+WKGYR+A F ++PL SG + + L LAI+APRR ++EVW++RNG R ++++ ++CRL+ S +++P FL+ G+
Sbjct: 302 ITALKDSPRKGESLALSPTCSLAAVTDSLGRVLLVDVHAL--VVVRLWKGYRDAHCKFLEAPLNGSSGLQHRSSCVKEDFSLCLAIHAPRRAVVEVWQLRNGPRLSVIHCSESCRLLQPPSQFWSSDRNDHEEESYSPKLVFLLKGD 446
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A176W4F2_MARPO (RAB3GAP2_N domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W4F2_MARPO) HSP 1 Score: 99.0 bits (245), Expect = 1.530e-21 Identity = 50/125 (40.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRR------QYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVT 357
+ L+D RK L++ + +G LAA+ D+LGR+ L+D+ L +++R+WKGYREA F ++P+ + V+ RR +++L LAI+APRRG++EVW+MR G R I+ + CRL+ T
Sbjct: 304 ITTLRDKQRKGLSLALSSSGSLAAVTDSLGRISLIDVQAL--VVVRLWKGYREAHCVFLEAPVDGRAEYEIVQSRRRRRFVRDEFKLCLAIHAPRRGVVEVWQMRYGARLMIVKCTEGCRLLQPT 426
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A4Y1QWL9_PRUDU (RAB3GAP2_N domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWL9_PRUDU) HSP 1 Score: 96.3 bits (238), Expect = 1.450e-20 Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPL---TPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL-STHTPSRCFLVVGE 420
+ L+D RK + + +G LAA+ D+LGR++L+D L +++R+WKGYR+A F + T SG+G E ++ Y L LAI+APR+G++E+W+MR G R K +L+ T G + ST+ P FL+ G+
Sbjct: 322 LTCLKDFPRKGEKLTLSPSGTLAAITDSLGRILLLDTQAL--VIVRLWKGYRDASCLFMEMLAKKDTAASGSGYYEPTKSDYCLCLAIHAPRKGIVEIWQMRTGPRLRSFQCAKGSKLLQPTYRFGSSIASTYVPLEVFLLNGD 463
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A2C9W8A8_MANES (RAB3GAP2_N domain-containing protein n=2 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9W8A8_MANES) HSP 1 Score: 95.9 bits (237), Expect = 1.810e-20 Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGA----VEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL-STHTPSRCFLVVGE 420
+ L+D RK + + +G L+A+ D+LGR++L+D L +++R+WKGYR+A FF L AGA E S+ Y L LAI+APR+G++EVW+MR G R + G+ +L+ T G L S + P FL+ G+
Sbjct: 301 LTCLKDHPRKGEKLTLSPSGTLSAITDSLGRILLLDTQAL--VVVRLWKGYRDAS-CFFMEMLVKRDNAGASSSYYEPSKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCGRGSKLLQPTYRFGSSLDSPYVPLEVFLLNGD 442
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A674NR65_TAKRU (Uncharacterized protein n=7 Tax=Takifugu TaxID=31032 RepID=A0A674NR65_TAKRU) HSP 1 Score: 96.3 bits (238), Expect = 2.110e-20 Identity = 60/142 (42.25%), Postives = 77/142 (54.23%), Query Frame = 1
Query: 10 LQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRL---------VNVTSPMGKRLSTHTPSRCFL 408
L DS R ++ + LA + D GRV L+DLA + IRMWKGYR+AQ+ + Q + E G +++ LFL IYAPRRG+LEVW M+ G R NVGK+CRL VN + G L HTP C L
Sbjct: 447 LPDSRRHGESICLSPCNMLAGVTDDFGRVALLDLAR--GICIRMWKGYRDAQLGWLQ--VQEERGDHDSSSLPKRHALFLVIYAPRRGILEVWAMKQGPRVGAFNVGKHCRLLYAGHRLMGVNCVTSQGWHL--HTPKVCLL 582
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A5C6NXM4_9TELE (Rab3 GTPase-activating protein non-catalytic subunit n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NXM4_9TELE) HSP 1 Score: 95.9 bits (237), Expect = 2.850e-20 Identity = 59/142 (41.55%), Postives = 77/142 (54.23%), Query Frame = 1
Query: 10 LQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRL---------VNVTSPMGKRLSTHTPSRCFL 408
L DS R ++ + LA + D GRV L+DLA + IRMWKGYR+AQ+ + Q + E G +++ LFL IYAPRRG+LEVW M+ G R N+GK+CRL VN + G L HTP C L
Sbjct: 376 LPDSRRHGESICLSPCNMLAGVTDDFGRVALLDLAR--GICIRMWKGYRDAQLGWLQ--VQEERGDHDSSSLPKRHALFLVIYAPRRGILEVWAMKQGPRVGAFNIGKHCRLLYAGHRLMGVNCVTSQGWHL--HTPKVCLL 511
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Match: A0A6L2K670_TANCI (Rab3 GTPase-activating protein non-catalytic subunit (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K670_TANCI) HSP 1 Score: 89.7 bits (221), Expect = 9.660e-20 Identity = 49/142 (34.51%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 1 VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGYREAQMAFFQSPLTPESGAGAVEKSRRQYQLFLAIYAPRRGLLEVWEMRNGNRQAILNVGKNCRLVNVTSPMGKRL--STHTPSRCFLVVGE 420
+ L+D RK + + +G LAA+ D+LGR+ML+D L +++R+WKGYR+A F + + +S G V + Y L LAI+APR+G++E+W+MR G R + K +++ T G + S++ P F + G+
Sbjct: 39 LTCLKDHPRKGEKLTLSPSGTLAAITDSLGRIMLLDTRAL--VVVRLWKGYRDANCLFVERLVNKDSEGGRVHV-KNDYSLCLAIHAPRKGIVEIWQMRTGPRILTIPCPKGSKILQPTYRFGSTVASSSYKPLEVFFLNGD 177 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106011.1289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig106011.1289.1 >prot_M-pyrifera_M_contig106011.1289.1 ID=prot_M-pyrifera_M_contig106011.1289.1|Name=mRNA_M-pyrifera_M_contig106011.1289.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp VNALQDSTRKALTVVVDGTGRLAAMADALGRVMLVDLATLPPMLIRMWKGback to top mRNA from alignment at M-pyrifera_M_contig106011:205..627- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig106011.1289.1 ID=mRNA_M-pyrifera_M_contig106011.1289.1|Name=mRNA_M-pyrifera_M_contig106011.1289.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig106011:205..627- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig106011:205..627- >mRNA_M-pyrifera_M_contig106011.1289.1 ID=mRNA_M-pyrifera_M_contig106011.1289.1|Name=mRNA_M-pyrifera_M_contig106011.1289.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig106011:205..627- (Macrocystis pyrifera P11B4 male)back to top |