mRNA_M-pyrifera_M_contig106010.1288.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106010.1288.1
Unique NamemRNA_M-pyrifera_M_contig106010.1288.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106010.1288.1 vs. uniprot
Match: A0A7Y2IH77_9ACTN (DUF948 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IH77_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 1.020e-48
Identity = 88/121 (72.73%), Postives = 106/121 (87.60%), Query Frame = 1 
Query:    1 MSIADFAALVVAIAVVVAAVFLVTAVNNLNNTLAKLEDTAHQLRDEGIAAFQDLRKLVADADAELDKVDLVLDRADQATSVMAETSRRTHEAVQDPVIKTLAVASGTSKVAKGWL--RRKK 357
            MS+ +FAA++VA+AVV  AVFL+ AVNNLNNTLA+L DTA +LR EG+AAF +LR L+ADADAELDKVDLVLDRAD ATS ++ETSRRTHEAVQDPVI+TLA+ASG+SK+ + WL  RRKK
Sbjct:    1 MSVTEFAAIIVAVAVVATAVFLIVAVNNLNNTLARLSDTAQELRGEGLAAFTELRALIADADAELDKVDLVLDRADHATSAISETSRRTHEAVQDPVIRTLALASGSSKMGRAWLWSRRKK 121
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BLAST of mRNA_M-pyrifera_M_contig106010.1288.1 vs. uniprot
Match: A0A7Y2GR88_9ACTN (DUF948 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GR88_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 5.100e-47
Identity = 87/120 (72.50%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:    4 SIADFAALVVAIAVVVAAVFLVTAVNNLNNTLAKLEDTAHQLRDEGIAAFQDLRKLVADADAELDKVDLVLDRADQATSVMAETSRRTHEAVQDPVIKTLAVASGTSKVAKGWL--RRKK 357
            +I +FAA++VAIAVVV A FL+ A+NNLNNTLA+L +TA++LR EGI+AF +LR LVADADAELDKVDLVLDRAD ATS ++ETSRRTHEAVQDPVI+TLA+ASG+SK+ + WL  RRKK
Sbjct:    5 TIGEFAAVIVAIAVVVTAAFLIVALNNLNNTLARLSETANELRSEGISAFTELRALVADADAELDKVDLVLDRADVATSAISETSRRTHEAVQDPVIRTLAIASGSSKMGRAWLWSRRKK 124
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BLAST of mRNA_M-pyrifera_M_contig106010.1288.1 vs. uniprot
Match: A0A351KB96_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351KB96_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 1.260e-9
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:   13 DFAALVVAIAVVVAAVFLVTAVNNLNNTLAKLEDTAHQLRDEGIAAFQDLRKLVADADAELDKVDLVLDRADQATSVMAETSRRTHEAVQDPVIKTLAVASGTSKVAKG 339
            D AA++VA+  + A V L+ A ++L  TL  L +T   LR+E +    DLR+ V  A A L++VD +LD A+  ++ +   SR T+ A+  P+I+  ++A+G  +  +G
Sbjct:   11 DLAAVLVAVVCLAAIVVLMVAASSLVKTLRTLRETVDMLREEAVPMVADLRRAVDHATAGLERVDDLLDTAEDISTTVDAASRLTYRALSPPLIRAASLAAGLGRFLRG 119
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BLAST of mRNA_M-pyrifera_M_contig106010.1288.1 vs. uniprot
Match: A0A538JRL2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JRL2_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 5.870e-7
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:    1 MSIADFAALVVAIAVVVAAVFLVTAVNNLNNTLAKLEDTAHQLRDEGIAAFQDLRKLVADADAELDKVDLVLDRADQATSVMAETSRRTHEAVQDPVIKTLAVASGTSK 327
            MS  ++AA+ VA    VA V LV  +  L  TL  L+ T   LR E I    D++K    A  +L++   VL  A+  +S +   SR  + A  +PV+K +A+A+GTS+
Sbjct:    1 MSAGEWAAVAVAGVAAVAVVGLVVTMATLLRTLGALQQTIDTLRAETIPLVTDVQKTARRASNDLERAGAVLQTAESLSSTVDSASRLAYRAFSNPVVKAMALATGTSR 109
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BLAST of mRNA_M-pyrifera_M_contig106010.1288.1 vs. uniprot
Match: UPI001E2B0030 (hypothetical protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E2B0030)

HSP 1 Score: 52.0 bits (123), Expect = 6.840e-6
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   46 VVAAVFLVTAVNNLNNTLAKLEDTAHQLRDEGIAAFQDLRKLVADADAELDKVDLVLDRADQATSVMAETSRRTHEAVQDPVIKTLAVASGTSKVAK 336
            +V  V +  AV +L  TL  L +T   LR E + A  +LR  V  A+ EL +VD +LD A+  ++ +  TS+ T   V++P++K  + +  T +VA+
Sbjct:   13 IVGLVVVAMAVQSLITTLRSLRETVDDLRRETLPAIAELRATVDAANGELQRVDSLLDTAEDVSARVDATSKLTWMVVRNPLVKLASASVATERVAR 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106010.1288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Y2IH77_9ACTN1.020e-4872.73DUF948 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A7Y2GR88_9ACTN5.100e-4772.50DUF948 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A351KB96_9ACTN1.260e-934.86Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A538JRL2_9ACTN5.870e-735.78Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
UPI001E2B00306.840e-634.02hypothetical protein n=1 Tax=Rhabdothermincola sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106010contigM-pyrifera_M_contig106010:111..476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.4425-CDS-M-pyrifera_M_contig106010:110..4761622815569.4425-CDS-M-pyrifera_M_contig106010:110..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106010 111..476 +
1692277468.1744397-CDS-M-pyrifera_M_contig106010:110..4761692277468.1744397-CDS-M-pyrifera_M_contig106010:110..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106010 111..476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106010.1288.1prot_M-pyrifera_M_contig106010.1288.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106010 111..476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106010.1288.1

>prot_M-pyrifera_M_contig106010.1288.1 ID=prot_M-pyrifera_M_contig106010.1288.1|Name=mRNA_M-pyrifera_M_contig106010.1288.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MSIADFAALVVAIAVVVAAVFLVTAVNNLNNTLAKLEDTAHQLRDEGIAA
FQDLRKLVADADAELDKVDLVLDRADQATSVMAETSRRTHEAVQDPVIKT
LAVASGTSKVAKGWLRRKKTT*
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mRNA from alignment at M-pyrifera_M_contig106010:111..476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106010.1288.1 ID=mRNA_M-pyrifera_M_contig106010.1288.1|Name=mRNA_M-pyrifera_M_contig106010.1288.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig106010:111..476+ (Macrocystis pyrifera P11B4 male)
ATGAGCATCGCCGATTTCGCAGCCCTCGTGGTGGCCATCGCGGTCGTCGT
CGCTGCGGTCTTCCTCGTGACTGCGGTCAACAACCTCAACAACACCCTGG
CCAAGCTGGAAGACACCGCACACCAGCTCCGAGACGAGGGCATCGCCGCC
TTCCAGGACCTTCGCAAACTGGTGGCCGACGCCGATGCCGAACTCGACAA
GGTCGACCTGGTGCTCGATCGCGCCGACCAGGCGACCAGCGTGATGGCCG
AGACCTCGCGCCGAACGCACGAAGCGGTCCAAGACCCGGTCATCAAGACA
CTTGCGGTCGCCTCCGGCACCTCCAAGGTGGCCAAGGGATGGCTGCGCAG
GAAGAAGACCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106010:111..476+

>mRNA_M-pyrifera_M_contig106010.1288.1 ID=mRNA_M-pyrifera_M_contig106010.1288.1|Name=mRNA_M-pyrifera_M_contig106010.1288.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig106010:111..476+ (Macrocystis pyrifera P11B4 male)
ATGAGCATCGCCGATTTCGCAGCCCTCGTGGTGGCCATCGCGGTCGTCGT
CGCTGCGGTCTTCCTCGTGACTGCGGTCAACAACCTCAACAACACCCTGG
CCAAGCTGGAAGACACCGCACACCAGCTCCGAGACGAGGGCATCGCCGCC
TTCCAGGACCTTCGCAAACTGGTGGCCGACGCCGATGCCGAACTCGACAA
GGTCGACCTGGTGCTCGATCGCGCCGACCAGGCGACCAGCGTGATGGCCG
AGACCTCGCGCCGAACGCACGAAGCGGTCCAAGACCCGGTCATCAAGACA
CTTGCGGTCGCCTCCGGCACCTCCAAGGTGGCCAAGGGATGGCTGCGCAG
GAAGAAGACCACCTGAATGAGCATCGCCGATTTCGCAGCCCTCGTGGTGG
CCATCGCGGTCGTCGTCGCTGCGGTCTTCCTCGTGACTGCGGTCAACAAC
CTCAACAACACCCTGGCCAAGCTGGAAGACACCGCACACCAGCTCCGAGA
CGAGGGCATCGCCGCCTTCCAGGACCTTCGCAAACTGGTGGCCGACGCCG
ATGCCGAACTCGACAAGGTCGACCTGGTGCTCGATCGCGCCGACCAGGCG
ACCAGCGTGATGGCCGAGACCTCGCGCCGAACGCACGAAGCGGTCCAAGA
CCCGGTCATCAAGACACTTGCGGTCGCCTCCGGCACCTCCAAGGTGGCCA
AGGGATGGCTGCGCAGGAAGAAGACCACCTGA
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