mRNA_M-pyrifera_M_contig1059.1260.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1059.1260.1
Unique NamemRNA_M-pyrifera_M_contig1059.1260.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1059.1260.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.460e-23
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:   31 RSTRTINTWQRSARGVNNGDEDEPYIIPGSGLRGVDTSKLTGSDKRDAEWFQRTAEREASGQLQWFEDPVTYIALFALVPVLIGVWGVLNCYIPGFC 321
            RS+   +  +R   G ++GD  +  ++ GSGLRGVDTSKLTG++KRDA+WF RT  RE    L WFEDPV Y+ L  +VPV+  VWG LNCY+PG C
Sbjct:   19 RSSWATSATKRGKEGDDDGDRID--MLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGIC 109
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BLAST of mRNA_M-pyrifera_M_contig1059.1260.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.830e-22
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   49 NTWQRSA--RGVNNGDEDEPY---IIPGSGLRGVDTSKLTGSDKRDAEWFQRTAEREASGQLQWFEDPVTYIALFALVPVLIGVWGVLNCYIPGFC 321
            N+W   A  RG  + D+D+     ++ GSGLRGVDTSKLTG++KRDA+WF RT  RE    L WFEDPV Y+ L  +VPV+  VWG  NCY+PG C
Sbjct:   74 NSWATRATKRGNTSNDDDDIDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGIC 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1059.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1A0_ECTSI5.460e-2353.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI54_9PHAE6.830e-2254.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1059contigM-pyrifera_M_contig1059:14555..15801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005270.1
Exons1
Model size1247
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8884356-CDS-M-pyrifera_M_contig1059:14554..148871622815567.8884356-CDS-M-pyrifera_M_contig1059:14554..14887Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 14555..14887 +
1692277467.4318082-CDS-M-pyrifera_M_contig1059:14554..148871692277467.4318082-CDS-M-pyrifera_M_contig1059:14554..14887Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 14555..14887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8986099-UTR-M-pyrifera_M_contig1059:14887..158011622815567.8986099-UTR-M-pyrifera_M_contig1059:14887..15801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1059 14888..15801 +
1692277467.4491084-UTR-M-pyrifera_M_contig1059:14887..158011692277467.4491084-UTR-M-pyrifera_M_contig1059:14887..15801Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1059 14888..15801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1059.1260.1prot_M-pyrifera_M_contig1059.1260.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1059 14555..14887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1059.1260.1

>prot_M-pyrifera_M_contig1059.1260.1 ID=prot_M-pyrifera_M_contig1059.1260.1|Name=mRNA_M-pyrifera_M_contig1059.1260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MSHPAGRESTRSTRTINTWQRSARGVNNGDEDEPYIIPGSGLRGVDTSKL
TGSDKRDAEWFQRTAEREASGQLQWFEDPVTYIALFALVPVLIGVWGVLN
CYIPGFCSPN*
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mRNA from alignment at M-pyrifera_M_contig1059:14555..15801+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1059.1260.1 ID=mRNA_M-pyrifera_M_contig1059.1260.1|Name=mRNA_M-pyrifera_M_contig1059.1260.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1247bp|location=Sequence derived from alignment at M-pyrifera_M_contig1059:14555..15801+ (Macrocystis pyrifera P11B4 male)
ATGTCGCACCCGGCGGGAAGGGAAAGTACTCGCAGTACTCGTACTATTAA
TACGTGGCAAAGGAGTGCCAGGGGTGTGAACAACGGGGATGAGGACGAGC
CGTATATTATACCGGGAAGCGGGCTGCGCGGGGTGGACACGAGCAAGCTT
ACGGGCTCGGACAAGCGAGACGCCGAGTGGTTTCAGCGCACGGCGGAGCG
GGAGGCGAGCGGGCAGCTGCAGTGGTTCGAAGACCCCGTGACCTATATCG
CCCTCTTTGCGCTGGTGCCCGTCCTCATCGGCGTTTGGGGGGTGTTAAAT
TGCTACATCCCGGGCTTCTGCTCCCCGAACTGAAGAGGAGGGGATGGTGT
ACGTACGTGAGCGGAAATGGGGGCGGAGGGTGGTTAATGTTTTTTTTCCG
TTTGCCGAGAGGCATTATAGTAGTAGTCGCATCAGTAGCACTCGTGGTCT
AGAGGGGTACATATTATAATATCATTACTGCTGTGCGTCGAGGTAAAGGG
AGAATCAGGCGGAGTGATGGCAAGATGAGTGATAAATGCTACTGACCGTG
TCGCTTCACTTTTTAACTTTTATCTGGCGGATTGTCATACAGATAAGATG
ACGCGGACTGACAAGTGGTTGTTGTGTACATGTGTATATAGTGCAAAAAG
ACGAGGGAACGCTGTATGGGGCATCTCGAACAGTGGGCTCCTGGCTCGGT
GTGAGCATGCCTGTCTGTGGTTGCTCTGTCGCTCGGTGCGCATGATGCAG
CTACAGCAGTACCTTGATTGCTTTACTAGTAACTACGGCAGCAACTACTG
CCAGGGTATGTTATTTCCGGAGTATATGCTCTGTGTGATAGTGTGGTAAA
TGCTGGTGGAGACGCGTCGCCGGGGTTTTCGCTGCTACGGTAGAAATGCA
GATTTGGCGGCTTGCGCCCCTATTGGTGTGGTTCGGGTCGCTACCCAACG
GTGAGTTCGACCAGTTGGTAGGAATAAAAGTTGTTGATGGAATGTCAATG
CTGGTCGCACCAGGTGCGATAACATAATGGGCATTGCCGAGGCGCCACGA
AGAACCTTACCGCTGTACACCGTTATGTCTTTTGCAACCAATCACGTTCA
TGATAGCACCATTTTCCATCGGAGCGTGAGTATTTTTCGCCCCCGAGGAC
AACATTGCCACGAAAGTATCGCCGCTTGTTGCATGTATCGCGTAGGGTTA
GGGTTTGGCTTCGAATATCTTCCAGGCTAAAGAGCATTCGTACATAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1059:14555..15801+

>mRNA_M-pyrifera_M_contig1059.1260.1 ID=mRNA_M-pyrifera_M_contig1059.1260.1|Name=mRNA_M-pyrifera_M_contig1059.1260.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig1059:14555..15801+ (Macrocystis pyrifera P11B4 male)
ATGTCGCACCCGGCGGGAAGGGAAAGTACTCGCAGTACTCGTACTATTAA
TACGTGGCAAAGGAGTGCCAGGGGTGTGAACAACGGGGATGAGGACGAGC
CGTATATTATACCGGGAAGCGGGCTGCGCGGGGTGGACACGAGCAAGCTT
ACGGGCTCGGACAAGCGAGACGCCGAGTGGTTTCAGCGCACGGCGGAGCG
GGAGGCGAGCGGGCAGCTGCAGTGGTTCGAAGACCCCGTGACCTATATCG
CCCTCTTTGCGCTGGTGCCCGTCCTCATCGGCGTTTGGGGGGTGTTAAAT
TGCTACATCCCGGGCTTCTGCTCCCCGAACTGAATGTCGCACCCGGCGGG
AAGGGAAAGTACTCGCAGTACTCGTACTATTAATACGTGGCAAAGGAGTG
CCAGGGGTGTGAACAACGGGGATGAGGACGAGCCGTATATTATACCGGGA
AGCGGGCTGCGCGGGGTGGACACGAGCAAGCTTACGGGCTCGGACAAGCG
AGACGCCGAGTGGTTTCAGCGCACGGCGGAGCGGGAGGCGAGCGGGCAGC
TGCAGTGGTTCGAAGACCCCGTGACCTATATCGCCCTCTTTGCGCTGGTG
CCCGTCCTCATCGGCGTTTGGGGGGTGTTAAATTGCTACATCCCGGGCTT
CTGCTCCCCGAACTGA
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