mRNA_M-pyrifera_M_contig105810.1245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105810.1245.1
Unique NamemRNA_M-pyrifera_M_contig105810.1245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A3Q9NJG8_9GAMM (Histidine kinase n=2 Tax=Marinobacter sp. NP-4(2019) TaxID=2488665 RepID=A0A3Q9NJG8_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 2.130e-9
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    1 KVLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEGPILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            KVL  +D + +  + +RML  LG  V     G+EAV    R +L E      +D H+  G+ G +  + LR   F  PI+  T G  Q ++ A  +AG DG ++KP +KDHL
Sbjct:  962 KVLVAEDSDDNRRLVERMLRRLGLEVITVTCGDEAV----RVALSESVRLVLMDRHM-PGLDGVEATRMLRKTGFRRPIIAFTAG-DQQEIEALQNAGCDGALNKPIDKDHL 1067          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A4U1LSG2_COBMA (Histidine kinase n=7 Tax=Cobetia TaxID=204286 RepID=A0A4U1LSG2_COBMA)

HSP 1 Score: 63.2 bits (152), Expect = 2.840e-9
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 1
Query:    1 KVLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEG-----PILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            +VL V+D E++ S+ + ML  LG  V+  + GE+A+ ++ +   D      F+D  +   + G +  +  R    E      PI+  T  + Q D   C++AG DG++HKPF +D L
Sbjct:  487 RVLVVEDNEVNQSLARAMLEYLGQQVTIVEEGEQALAWLSQA--DHEVDLIFMDMQMPV-LDGLETTRRWRQREAEASATRLPIIAMTANVMQEDARRCIEAGMDGVLHKPFTRDDL 600          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A0P7DQK7_9GAMM (Histidine kinase n=15 Tax=Bacteria TaxID=2 RepID=A0A0P7DQK7_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 2.840e-9
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 1
Query:    4 VLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEGP------ILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            VL V+D E++ S+ + ML  LG  V+  + GE+A+E++ + S D      F+D  +   + G +  +  R    E P      I+  T  + Q D   C++AG  G++HKPF +D L
Sbjct:  488 VLVVEDNEVNQSLARAMLEYLGQQVTVVEDGEQALEWLAQASNDV--DLVFMDMQMPV-LDGVETTRRWRQHESEQPASARLPIIAMTANVMQEDARRCIEAGMQGVLHKPFTRDDL 601          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A3T0K463_9GAMM (Histidine kinase n=1 Tax=Cobetia sp. ICG0124 TaxID=2053669 RepID=A0A3T0K463_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 5.260e-9
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 1
Query:    1 KVLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEG-----PILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            +VL V+D E++ S+ + ML  LG  V+  + GE+A+ ++ +   D      F+D  +   + G +  +  R    E      PI+  T  + Q D   C++AG DG++HKPF +D L
Sbjct:  487 RVLVVEDNEVNQSLARAMLEYLGQQVTIVEEGEQALAWLSQA--DHEVDLIFMDMQMPV-LDGLETTRRWRQREAETSATRLPIIAMTANVMQEDARRCIEAGMDGVLHKPFTRDDL 600          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: X0S1S5_9ZZZZ (Response regulatory domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0S1S5_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 1.790e-8
Identity = 34/112 (30.36%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    1 KVLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEG--PILICTGGLTQADLAACLDAGADGIVHKPFNKD 330
            K+L V+D E+++ +C R++ + G  V + ++GEE VE  ++    E P    +D  L  G+ G +  + LR +  +G  PI+  T      D    L AG  G + KP N +
Sbjct:    3 KILVVEDNEINIYLCSRIIKSSGYEVIEARSGEEGVELTIK----EKPDLIIMDIQL-PGIDGYEATKRLRKSEADGEIPIIALTSYAMAEDKKKALKAGCTGYIKKPINPE 109          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A1F9NAZ8_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9 TaxID=1797899 RepID=A0A1F9NAZ8_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.800e-8
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    4 VLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEGPILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            VL +DDEEM L + KR+L TLG +V+    GE+AV   L     E      +D  +   ++G +V + LR+A  +  +++C+G   + +    LD GA   + KPF +D L
Sbjct:  521 VLLIDDEEMVLEVGKRLLETLGHTVTCCSDGEKAVA--LFAKKPESFDVVILDLVM-PHLSGREVFERLRAAYPKVRVIVCSGYSVEGEAQKVLDLGARQFLQKPFRRDQL 628          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A1F9LHM0_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 TaxID=1797895 RepID=A0A1F9LHM0_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.850e-8
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    4 VLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEGPILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            VL +DDEEM L + KR+L TLG +V+    GE+AV   L     E      +D  +   ++G +V + LR+A  +  +++C+G   + +    LD GA   + KPF +D L
Sbjct:  752 VLLIDDEEMVLEVGKRLLETLGHTVTCCSDGEKAVA--LFAKKPESFDVVILDLVM-PHLSGREVFERLRAAYPKVRVIVCSGYSVEGEAQKVLDLGARQFLQKPFRRDQL 859          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: A0A2N3AJK8_9BACT (Response regulator n=1 Tax=Candidatus Atribacteria bacterium HGW-Atribacteria-1 TaxID=2013676 RepID=A0A2N3AJK8_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 7.050e-8
Identity = 33/112 (29.46%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    1 KVLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEG--PILICTGGLTQADLAACLDAGADGIVHKPFNKD 330
            K+L V+D E+++ +C R+L + G  V + ++GEE VE  ++      P    +D  L  G+ G +  + +R +  +G  PI+  T      D    L AG  G + KP N +
Sbjct:    3 KILVVEDNEINMYLCSRILKSSGYEVIEARSGEEGVELTIKGK----PDLIIMDIQL-PGIDGLEATRRIRESEADGEIPIIALTSYAMAGDRKKALKAGCTGYIEKPINPE 109          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: UPI001FEABFDA (ATP-binding protein n=1 Tax=Kineosporia corallincola TaxID=2835133 RepID=UPI001FEABFDA)

HSP 1 Score: 58.5 bits (140), Expect = 1.170e-7
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 1
Query:    1 KVLAVDDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLRSARFEG------PILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            +VL  +D E +  I + ML++ G  VS  + GE AV  +L     +   A F+D H+  G  G +  + +R+A  E       PI+  T      D  ACLDAG D  + KP+  D L
Sbjct:  556 RVLVAEDNETNQLIARAMLTSRGLDVSIVEDGEAAVGAVLGGQPGDRFDAVFMDVHM-PGTDGLEATRRIRAAEAEHGRGERIPIIAMTANAFDDDRTACLDAGMDDFLPKPWKADQL 672          
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Match: UPI001581ABA6 (response regulator n=1 Tax=Halomonas taeanensis TaxID=284577 RepID=UPI001581ABA6)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-7
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 1
Query:   16 DDEEMSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGAGMTGADVAQHLR--------SARFEGPILICTGGLTQADLAACLDAGADGIVHKPFNKDHL 336
            +D E++ S+ + ML  LG  V+  + G +A+E++ +   D      F+D  +   + G +  +  R        SAR   PI+  T  + Q D   C+DAG  G++HKPF +D L
Sbjct:    1 EDNEVNQSLARAMLEYLGQQVTVVEDGGQALEWLAQAGNDV--DLVFMDMQMPV-LDGVETTRRWRHHEAEQPASARL--PIIAMTANVMQEDARRCIDAGMQGVLHKPFTRDDL 110          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105810.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q9NJG8_9GAMM2.130e-935.71Histidine kinase n=2 Tax=Marinobacter sp. NP-4(201... [more]
A0A4U1LSG2_COBMA2.840e-930.77Histidine kinase n=7 Tax=Cobetia TaxID=204286 RepI... [more]
A0A0P7DQK7_9GAMM2.840e-931.62Histidine kinase n=15 Tax=Bacteria TaxID=2 RepID=A... [more]
A0A3T0K463_9GAMM5.260e-930.77Histidine kinase n=1 Tax=Cobetia sp. ICG0124 TaxID... [more]
X0S1S5_9ZZZZ1.790e-830.36Response regulatory domain-containing protein n=1 ... [more]
A0A1F9NAZ8_9DELT1.800e-834.23Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
A0A1F9LHM0_9DELT1.850e-834.23Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
A0A2N3AJK8_9BACT7.050e-829.46Response regulator n=1 Tax=Candidatus Atribacteria... [more]
UPI001FEABFDA1.170e-733.05ATP-binding protein n=1 Tax=Kineosporia corallinco... [more]
UPI001581ABA61.510e-730.43response regulator n=1 Tax=Halomonas taeanensis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105810contigM-pyrifera_M_contig105810:56..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.0926855-UTR-M-pyrifera_M_contig105810:55..821622815567.0926855-UTR-M-pyrifera_M_contig105810:55..82Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105810 56..82 +
1692277467.0339026-UTR-M-pyrifera_M_contig105810:55..821692277467.0339026-UTR-M-pyrifera_M_contig105810:55..82Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105810 56..82 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.106354-CDS-M-pyrifera_M_contig105810:82..3911622815567.106354-CDS-M-pyrifera_M_contig105810:82..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105810 83..391 +
1692277467.0445235-CDS-M-pyrifera_M_contig105810:82..3911692277467.0445235-CDS-M-pyrifera_M_contig105810:82..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105810 83..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105810.1245.1prot_M-pyrifera_M_contig105810.1245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105810 83..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105810.1245.1

>prot_M-pyrifera_M_contig105810.1245.1 ID=prot_M-pyrifera_M_contig105810.1245.1|Name=mRNA_M-pyrifera_M_contig105810.1245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MSLSICKRMLSTLGGSVSDWKTGEEAVEYILRCSLDEMPAAAFVDFHLGA
GMTGADVAQHLRSARFEGPILICTGGLTQADLAACLDAGADGIVHKPFNK
DHL
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mRNA from alignment at M-pyrifera_M_contig105810:56..391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105810.1245.1 ID=mRNA_M-pyrifera_M_contig105810.1245.1|Name=mRNA_M-pyrifera_M_contig105810.1245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig105810:56..391+ (Macrocystis pyrifera P11B4 male)
AAGGTGCTCGCAGTCGATGACGAGGAAATGTCCCTCTCCATCTGCAAGAG AATGCTCTCCACTCTGGGAGGATCTGTCTCCGACTGGAAGACGGGAGAGG AGGCCGTGGAGTACATCCTCCGATGCTCCCTCGACGAAATGCCTGCCGCG GCCTTTGTCGATTTTCATCTCGGGGCGGGCATGACTGGAGCTGATGTAGC CCAACACTTGCGCTCTGCCAGATTTGAAGGACCCATTCTCATCTGCACCG GCGGGCTCACGCAAGCTGATCTAGCAGCTTGCCTCGATGCCGGTGCAGAT GGAATCGTCCACAAACCATTCAACAAAGACCACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105810:56..391+

>mRNA_M-pyrifera_M_contig105810.1245.1 ID=mRNA_M-pyrifera_M_contig105810.1245.1|Name=mRNA_M-pyrifera_M_contig105810.1245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig105810:56..391+ (Macrocystis pyrifera P11B4 male)
ATGTCCCTCTCCATCTGCAAGAGAATGCTCTCCACTCTGGGAGGATCTGT
CTCCGACTGGAAGACGGGAGAGGAGGCCGTGGAGTACATCCTCCGATGCT
CCCTCGACGAAATGCCTGCCGCGGCCTTTGTCGATTTTCATCTCGGGGCG
GGCATGACTGGAGCTGATGTAGCCCAACACTTGCGCTCTGCCAGATTTGA
AGGACCCATTCTCATCTGCACCGGCGGGCTCACGCAAGCTGATCTAGCAG
CTTGCCTCGATGCCGGTGCAGATGGAATCGTCCACAAACCATTCAACAAA
GACCACCTCATGTCCCTCTCCATCTGCAAGAGAATGCTCTCCACTCTGGG
AGGATCTGTCTCCGACTGGAAGACGGGAGAGGAGGCCGTGGAGTACATCC
TCCGATGCTCCCTCGACGAAATGCCTGCCGCGGCCTTTGTCGATTTTCAT
CTCGGGGCGGGCATGACTGGAGCTGATGTAGCCCAACACTTGCGCTCTGC
CAGATTTGAAGGACCCATTCTCATCTGCACCGGCGGGCTCACGCAAGCTG
ATCTAGCAGCTTGCCTCGATGCCGGTGCAGATGGAATCGTCCACAAACCA
TTCAACAAAGACCACCTC
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