mRNA_M-pyrifera_M_contig105792.1239.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105792.1239.1
Unique NamemRNA_M-pyrifera_M_contig105792.1239.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105792.1239.1 vs. uniprot
Match: A0A7K3Z860_9CREN (Uncharacterized protein n=1 Tax=Crenarchaeota archaeon TaxID=2056631 RepID=A0A7K3Z860_9CREN)

HSP 1 Score: 55.1 bits (131), Expect = 4.620e-6
Identity = 35/131 (26.72%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:   67 AQISQDFFDKRLDWDEWEIHISGEKKF----EIINGLDDALIVELKSNRPNFLRNNIDNFHLLDFDRDGDKDIIYYGFAGSESYRTLFFKNMKGSYFRLLDLFGQVVEFSYDLPTDPLSFRLLEVACCGDN 447
            AQ S  FF+K ++   W + +  ++      ++IN  +  L++    ++ + L   +  FHL+DF+ DG +D+I+ G  G+++Y  LF K +  +Y  LL+  G++++ +     +PL+  +    CCG  
Sbjct:   20 AQPSFFFFNKEIN--NWYLDVKQQEILTEIQKVINSNEINLLLTQHQSKTDSL---MPYFHLIDFNNDGLRDLIFNGKIGTKNYVLLFKKRIDATYNLLLNQAGEILQTNAPFQNNPLALTIWNNNCCGSK 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105792.1239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7K3Z860_9CREN4.620e-626.72Uncharacterized protein n=1 Tax=Crenarchaeota arch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105792contigM-pyrifera_M_contig105792:2..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog313595.P700755_004045
Hectar predicted targeting categorysignal peptide
EggNOG OGs1IBZ1@117743,2C9VM@1,33DDR@2,4NYR2@976
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.760584-CDS-M-pyrifera_M_contig105792:1..4421622815566.760584-CDS-M-pyrifera_M_contig105792:1..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105792 2..442 -
1692277466.8508122-CDS-M-pyrifera_M_contig105792:1..4421692277466.8508122-CDS-M-pyrifera_M_contig105792:1..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105792 2..442 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.7752135-UTR-M-pyrifera_M_contig105792:442..4541622815566.7752135-UTR-M-pyrifera_M_contig105792:442..454Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105792 443..454 -
1692277466.861216-UTR-M-pyrifera_M_contig105792:442..4541692277466.861216-UTR-M-pyrifera_M_contig105792:442..454Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105792 443..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105792.1239.1prot_M-pyrifera_M_contig105792.1239.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105792 2..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105792.1239.1

>prot_M-pyrifera_M_contig105792.1239.1 ID=prot_M-pyrifera_M_contig105792.1239.1|Name=mRNA_M-pyrifera_M_contig105792.1239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MKLHVLLYLFLINFSVLQAQISQDFFDKRLDWDEWEIHISGEKKFEIING
LDDALIVELKSNRPNFLRNNIDNFHLLDFDRDGDKDIIYYGFAGSESYRT
LFFKNMKGSYFRLLDLFGQVVEFSYDLPTDPLSFRLLEVACCGDNYY
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mRNA from alignment at M-pyrifera_M_contig105792:2..454-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105792.1239.1 ID=mRNA_M-pyrifera_M_contig105792.1239.1|Name=mRNA_M-pyrifera_M_contig105792.1239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig105792:2..454- (Macrocystis pyrifera P11B4 male)
ATTATTGTATCGATGAAATTACATGTACTTCTATATTTATTTCTAATCAA
TTTTAGTGTTTTGCAAGCTCAAATATCACAAGACTTTTTTGATAAAAGGT
TAGATTGGGATGAATGGGAAATACATATTTCTGGTGAGAAAAAATTTGAG
ATTATTAATGGCTTAGACGATGCTTTAATTGTAGAACTCAAATCAAATAG
ACCCAATTTTCTTAGGAATAATATTGATAATTTTCACCTCTTGGATTTTG
ATAGAGATGGGGATAAAGATATTATTTATTATGGTTTTGCTGGCTCTGAG
AGTTACAGGACATTGTTTTTTAAAAATATGAAAGGTTCTTATTTTAGACT
TTTGGACTTGTTTGGGCAGGTTGTAGAGTTTTCATACGATTTGCCGACTG
ACCCCTTGAGCTTTAGATTGCTTGAGGTAGCATGTTGTGGGGACAACTAC
TAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105792:2..454-

>mRNA_M-pyrifera_M_contig105792.1239.1 ID=mRNA_M-pyrifera_M_contig105792.1239.1|Name=mRNA_M-pyrifera_M_contig105792.1239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig105792:2..454- (Macrocystis pyrifera P11B4 male)
ATGAAATTACATGTACTTCTATATTTATTTCTAATCAATTTTAGTGTTTT
GCAAGCTCAAATATCACAAGACTTTTTTGATAAAAGGTTAGATTGGGATG
AATGGGAAATACATATTTCTGGTGAGAAAAAATTTGAGATTATTAATGGC
TTAGACGATGCTTTAATTGTAGAACTCAAATCAAATAGACCCAATTTTCT
TAGGAATAATATTGATAATTTTCACCTCTTGGATTTTGATAGAGATGGGG
ATAAAGATATTATTTATTATGGTTTTGCTGGCTCTGAGAGTTACAGGACA
TTGTTTTTTAAAAATATGAAAGGTTCTTATTTTAGACTTTTGGACTTGTT
TGGGCAGGTTGTAGAGTTTTCATACGATTTGCCGACTGACCCCTTGAGCT
TTAGATTGCTTGAGGTAGCATGTTGTGGGGACAACTACTATATGAAATTA
CATGTACTTCTATATTTATTTCTAATCAATTTTAGTGTTTTGCAAGCTCA
AATATCACAAGACTTTTTTGATAAAAGGTTAGATTGGGATGAATGGGAAA
TACATATTTCTGGTGAGAAAAAATTTGAGATTATTAATGGCTTAGACGAT
GCTTTAATTGTAGAACTCAAATCAAATAGACCCAATTTTCTTAGGAATAA
TATTGATAATTTTCACCTCTTGGATTTTGATAGAGATGGGGATAAAGATA
TTATTTATTATGGTTTTGCTGGCTCTGAGAGTTACAGGACATTGTTTTTT
AAAAATATGAAAGGTTCTTATTTTAGACTTTTGGACTTGTTTGGGCAGGT
TGTAGAGTTTTCATACGATTTGCCGACTGACCCCTTGAGCTTTAGATTGC
TTGAGGTAGCATGTTGTGGGGACAACTACTAT
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