mRNA_M-pyrifera_M_contig105685.1221.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105685.1221.1
Unique NamemRNA_M-pyrifera_M_contig105685.1221.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105685.1221.1 vs. uniprot
Match: A0A533TNG2_CHLSQ (Sel1 repeat family protein n=1 Tax=Chlorobium sp. TaxID=1095 RepID=A0A533TNG2_CHLSQ)

HSP 1 Score: 52.0 bits (123), Expect = 9.790e-6
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   13 AANGDADAQSAVGSFYSN----TEREAIAIKWFRLAADQGNAESQFKLAMAYDQGRG 171
            A +G+A AQ+ +G  Y      T+ EA A+KW+RLAA+QG AE+QF LA  Y++GRG
Sbjct:   34 AEHGNAVAQNKLGIHYELGLGITQDEAAAVKWYRLAAEQGLAEAQFNLAEMYEEGRG 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105685.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A533TNG2_CHLSQ9.790e-650.88Sel1 repeat family protein n=1 Tax=Chlorobium sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105685contigM-pyrifera_M_contig105685:61..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.68953-CDS-M-pyrifera_M_contig105685:60..4981622815565.68953-CDS-M-pyrifera_M_contig105685:60..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105685 61..498 -
1692277466.3233469-CDS-M-pyrifera_M_contig105685:60..4981692277466.3233469-CDS-M-pyrifera_M_contig105685:60..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105685 61..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105685.1221.1prot_M-pyrifera_M_contig105685.1221.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105685 61..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105685.1221.1

>prot_M-pyrifera_M_contig105685.1221.1 ID=prot_M-pyrifera_M_contig105685.1221.1|Name=mRNA_M-pyrifera_M_contig105685.1221.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
KVSAAANGDADAQSAVGSFYSNTEREAIAIKWFRLAADQGNAESQFKLAM
AYDQGRGISANKIEAIRLYQLAVAQGYSDAQLMFASKYAQGMDVEQDFAQ
AAKLYQLAADQGDVFAINELGKMYVTGRGVAKSTDQAIQLYKVAAQ
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mRNA from alignment at M-pyrifera_M_contig105685:61..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105685.1221.1 ID=mRNA_M-pyrifera_M_contig105685.1221.1|Name=mRNA_M-pyrifera_M_contig105685.1221.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig105685:61..498- (Macrocystis pyrifera P11B4 male)
AAAGTATCCGCTGCCGCGAATGGGGATGCCGACGCACAGTCGGCTGTCGG
TTCATTTTATTCCAATACAGAAAGAGAGGCAATTGCCATAAAGTGGTTCC
GATTGGCTGCTGATCAAGGAAATGCTGAGTCGCAATTCAAACTCGCGATG
GCCTATGATCAAGGCCGCGGCATTTCGGCAAATAAAATCGAGGCTATAAG
GCTTTATCAGCTTGCTGTTGCGCAAGGTTATTCTGACGCGCAACTCATGT
TTGCCAGTAAGTACGCTCAAGGCATGGATGTTGAACAAGACTTCGCCCAA
GCAGCAAAATTATACCAGCTTGCAGCCGACCAGGGCGATGTTTTCGCGAT
AAACGAGCTAGGAAAAATGTACGTAACCGGGCGGGGTGTAGCTAAGAGCA
CCGACCAGGCAATTCAATTGTATAAGGTTGCCGCTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105685:61..498-

>mRNA_M-pyrifera_M_contig105685.1221.1 ID=mRNA_M-pyrifera_M_contig105685.1221.1|Name=mRNA_M-pyrifera_M_contig105685.1221.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig105685:61..498- (Macrocystis pyrifera P11B4 male)
AAAGTATCCGCTGCCGCGAATGGGGATGCCGACGCACAGTCGGCTGTCGG
TTCATTTTATTCCAATACAGAAAGAGAGGCAATTGCCATAAAGTGGTTCC
GATTGGCTGCTGATCAAGGAAATGCTGAGTCGCAATTCAAACTCGCGATG
GCCTATGATCAAGGCCGCGGCATTTCGGCAAATAAAATCGAGGCTATAAG
GCTTTATCAGCTTGCTGTTGCGCAAGGTTATTCTGACGCGCAACTCATGT
TTGCCAGTAAGTACGCTCAAGGCATGGATGTTGAACAAGACTTCGCCCAA
GCAGCAAAATTATACCAGCTTGCAGCCGACCAGGGCGATGTTTTCGCGAT
AAACGAGCTAGGAAAAATGTACGTAACCGGGCGGGGTGTAGCTAAGAGCA
CCGACCAGGCAATTCAATTGTATAAGGTTGCCGCTCAGAAAGTATCCGCT
GCCGCGAATGGGGATGCCGACGCACAGTCGGCTGTCGGTTCATTTTATTC
CAATACAGAAAGAGAGGCAATTGCCATAAAGTGGTTCCGATTGGCTGCTG
ATCAAGGAAATGCTGAGTCGCAATTCAAACTCGCGATGGCCTATGATCAA
GGCCGCGGCATTTCGGCAAATAAAATCGAGGCTATAAGGCTTTATCAGCT
TGCTGTTGCGCAAGGTTATTCTGACGCGCAACTCATGTTTGCCAGTAAGT
ACGCTCAAGGCATGGATGTTGAACAAGACTTCGCCCAAGCAGCAAAATTA
TACCAGCTTGCAGCCGACCAGGGCGATGTTTTCGCGATAAACGAGCTAGG
AAAAATGTACGTAACCGGGCGGGGTGTAGCTAAGAGCACCGACCAGGCAA
TTCAATTGTATAAGGTTGCCGCTCAG
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