mRNA_M-pyrifera_M_contig105658.1210.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105658.1210.1
Unique NamemRNA_M-pyrifera_M_contig105658.1210.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105658.1210.1 vs. uniprot
Match: A0A8J4Q2C5_9MYCE (HMA domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q2C5_9MYCE)

HSP 1 Score: 60.8 bits (146), Expect = 3.750e-8
Identity = 28/65 (43.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   52 KTITLYISGMTNDNHRKQLETALLRVRGVVSFLIDLYAQKAVIRTLVSAETLVRAIRDTTGMTAS 246
            KT   ++ GM N++ +KQ+E ALL+ +GV+SF+IDL+  +A IRT +S++ +   IR+  G++AS
Sbjct:  162 KTFLFHVKGMNNESIKKQVEDALLKTKGVISFMIDLHTYQATIRTSLSSDEVKLVIRNNVGLSAS 226
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105658.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J4Q2C5_9MYCE3.750e-843.08HMA domain-containing protein n=1 Tax=Polysphondyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105658contigM-pyrifera_M_contig105658:19..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.6e-07
Seed eggNOG ortholog5786.XP_003288462.1
KEGG koko:K17306
Hectar predicted targeting categoryother localisation
EggNOG OGs2E9QI@1,2RE5D@2759,3XD33@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.1668022-CDS-M-pyrifera_M_contig105658:18..4621622815565.1668022-CDS-M-pyrifera_M_contig105658:18..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105658 19..462 -
1692277466.1814907-CDS-M-pyrifera_M_contig105658:18..4621692277466.1814907-CDS-M-pyrifera_M_contig105658:18..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105658 19..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105658.1210.1prot_M-pyrifera_M_contig105658.1210.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105658 19..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105658.1210.1

>prot_M-pyrifera_M_contig105658.1210.1 ID=prot_M-pyrifera_M_contig105658.1210.1|Name=mRNA_M-pyrifera_M_contig105658.1210.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
NTPSEGAKKPNRKMANAKTITLYISGMTNDNHRKQLETALLRVRGVVSFL
IDLYAQKAVIRTLVSAETLVRAIRDTTGMTASQRKHSPDASGTPEPDKEN
DAPGYLDDSTDDLQEHSKTALAKQDDKNDPQQAWGWGLGRISKALWG*
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mRNA from alignment at M-pyrifera_M_contig105658:19..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105658.1210.1 ID=mRNA_M-pyrifera_M_contig105658.1210.1|Name=mRNA_M-pyrifera_M_contig105658.1210.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig105658:19..462- (Macrocystis pyrifera P11B4 male)
AACACACCCTCCGAGGGAGCCAAGAAGCCCAACCGCAAGATGGCCAACGC
CAAGACCATTACCCTCTACATCAGCGGTATGACCAACGACAACCACAGGA
AGCAGCTGGAGACAGCGCTTCTGCGCGTTAGGGGCGTGGTCAGTTTCTTG
ATCGACCTTTACGCACAGAAGGCAGTCATCCGCACCCTCGTTTCGGCTGA
GACTCTCGTCCGTGCCATCAGGGACACAACTGGGATGACTGCTTCACAGC
GCAAACATTCGCCAGATGCAAGTGGAACTCCTGAGCCGGACAAGGAGAAC
GACGCCCCGGGCTACCTCGATGACTCCACCGACGACCTGCAGGAGCACAG
CAAGACGGCCCTTGCCAAGCAGGACGACAAGAACGACCCCCAGCAGGCCT
GGGGATGGGGGCTCGGCCGTATCAGCAAGGCGCTGTGGGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105658:19..462-

>mRNA_M-pyrifera_M_contig105658.1210.1 ID=mRNA_M-pyrifera_M_contig105658.1210.1|Name=mRNA_M-pyrifera_M_contig105658.1210.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig105658:19..462- (Macrocystis pyrifera P11B4 male)
AACACACCCTCCGAGGGAGCCAAGAAGCCCAACCGCAAGATGGCCAACGC
CAAGACCATTACCCTCTACATCAGCGGTATGACCAACGACAACCACAGGA
AGCAGCTGGAGACAGCGCTTCTGCGCGTTAGGGGCGTGGTCAGTTTCTTG
ATCGACCTTTACGCACAGAAGGCAGTCATCCGCACCCTCGTTTCGGCTGA
GACTCTCGTCCGTGCCATCAGGGACACAACTGGGATGACTGCTTCACAGC
GCAAACATTCGCCAGATGCAAGTGGAACTCCTGAGCCGGACAAGGAGAAC
GACGCCCCGGGCTACCTCGATGACTCCACCGACGACCTGCAGGAGCACAG
CAAGACGGCCCTTGCCAAGCAGGACGACAAGAACGACCCCCAGCAGGCCT
GGGGATGGGGGCTCGGCCGTATCAGCAAGGCGCTGTGGGGATGAAACACA
CCCTCCGAGGGAGCCAAGAAGCCCAACCGCAAGATGGCCAACGCCAAGAC
CATTACCCTCTACATCAGCGGTATGACCAACGACAACCACAGGAAGCAGC
TGGAGACAGCGCTTCTGCGCGTTAGGGGCGTGGTCAGTTTCTTGATCGAC
CTTTACGCACAGAAGGCAGTCATCCGCACCCTCGTTTCGGCTGAGACTCT
CGTCCGTGCCATCAGGGACACAACTGGGATGACTGCTTCACAGCGCAAAC
ATTCGCCAGATGCAAGTGGAACTCCTGAGCCGGACAAGGAGAACGACGCC
CCGGGCTACCTCGATGACTCCACCGACGACCTGCAGGAGCACAGCAAGAC
GGCCCTTGCCAAGCAGGACGACAAGAACGACCCCCAGCAGGCCTGGGGAT
GGGGGCTCGGCCGTATCAGCAAGGCGCTGTGGGGATGA
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