mRNA_M-pyrifera_M_contig10563.1205.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10563.1205.1
Unique NamemRNA_M-pyrifera_M_contig10563.1205.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10563.1205.1 vs. uniprot
Match: D7FP74_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP74_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.730e-31
Identity = 231/340 (67.94%), Postives = 255/340 (75.00%), Query Frame = 1 
Query:    1 MLDRDQRRSFLDDNEARLFDLVFDRATPEQLAQWLRLLLEVSADTGDLNLVSTLQNAGAEGSTMHLAVRGRHGMLVADLLERGASPGERDANGDAPLHLAAIRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFCDSDGFSPLQLAVQHGHLNLLAVLAKHGADIDVASTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAVDD------RRGGGASPLEWAACNGYADVVRALLMHGADVNSSSSPDQPALHRA 1002
            M+ RDQ+ +FL   E  L  L+FD AT EQL  WLRL LE++AD   L L+S L+NAGA GS  HLAVR  +GMLVAD ++RG SP  RD NGDAPL       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPF DS+  S                 AKHGAD+D A+++      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  + +      R GG  SPLE AAC+G+A VVR +L HGADV+S+  P QPALHRA
Sbjct:    1 MIGRDQQHAFLRGFEPELVKLMFDTATAEQLEAWLRLSLELAADNKHLELISRLENAGAVGSRFHLAVRQGNGMLVADTIKRGESPDARDGNGDAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFLDSESCSXXXXXXXXXXXXXXXXXAKHGADMDAAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNPIIENDVVNLRFGGEPSPLELAACHGHAHVVRTMLRHGADVDSTDCPYQPALHRA 340
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BLAST of mRNA_M-pyrifera_M_contig10563.1205.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.120e-5
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   22 RSFLDDNEARLFDLVFDRATPEQLAQWLRLLLEVSADTGDLNLVSTLQNAGAEGST----------MHLAVRGRHGMLVADLLERGASPGERDANGDAP 288
            RS L   E  +F LV   ATPEQ A+WLR+ LE +A +G+L+LV+ L  AGA+G            +  A+ G +  +++ LL+ G  P   DAN  AP
Sbjct:    7 RSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGP---DANVLAP 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10563.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP74_ECTSI1.730e-3167.94Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
A0A6H5K513_9PHAE2.120e-539.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10563contigM-pyrifera_M_contig10563:4526..5938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue1.8e-28
Seed eggNOG ortholog2880.D7FP74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_000580.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1413
Cds size1413
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.9442015-CDS-M-pyrifera_M_contig10563:4525..59381622815564.9442015-CDS-M-pyrifera_M_contig10563:4525..5938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10563 4526..5938 +
1692277466.063714-CDS-M-pyrifera_M_contig10563:4525..59381692277466.063714-CDS-M-pyrifera_M_contig10563:4525..5938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10563 4526..5938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10563.1205.1prot_M-pyrifera_M_contig10563.1205.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10563 4526..5938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10563.1205.1

>prot_M-pyrifera_M_contig10563.1205.1 ID=prot_M-pyrifera_M_contig10563.1205.1|Name=mRNA_M-pyrifera_M_contig10563.1205.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=471bp
MLDRDQRRSFLDDNEARLFDLVFDRATPEQLAQWLRLLLEVSADTGDLNL
VSTLQNAGAEGSTMHLAVRGRHGMLVADLLERGASPGERDANGDAPLHLA
AIRGDDKMVRMLLSHGADANQQDSKRRTPLHLAARHGQARAAEALLSGGA
WVSPFCDSDGFSPLQLAVQHGHLNLLAVLAKHGADIDVASTSGVSAMHLA
ASRGMPGVLRSLAEAGADIEARDKGGSTALHVAAEHGASVSVDTLLALGA
STRKLTRTGFSPLCLAAKEGHIRSTIALLAAGPKTAVDDRRGGGASPLEW
AACNGYADVVRALLMHGADVNSSSSPDQPALHRAADEGHLDVLNALIKNG
ADLDAVDADGETALHHAATFNQAGAIDVLARAGCDIEARGEELFTPLHLA
CRFLKREAAEALLKLGADVQTRDEKGFTPLHSAAANGRNAGTNRMVRLLL
NFGADEAAVTADGCTAFDTVG
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mRNA from alignment at M-pyrifera_M_contig10563:4526..5938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10563.1205.1 ID=mRNA_M-pyrifera_M_contig10563.1205.1|Name=mRNA_M-pyrifera_M_contig10563.1205.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at M-pyrifera_M_contig10563:4526..5938+ (Macrocystis pyrifera P11B4 male)
ATGCTGGACAGGGATCAAAGGCGCAGTTTCCTGGACGACAACGAAGCTCG
TCTTTTCGACCTAGTTTTCGACCGAGCCACACCGGAACAGTTGGCGCAAT
GGTTACGGTTGCTGCTGGAGGTGTCTGCGGACACAGGTGACCTCAACCTC
GTCTCGACGCTGCAGAACGCTGGGGCTGAAGGGAGCACCATGCACCTGGC
TGTCCGGGGCCGTCACGGTATGCTCGTGGCGGACCTTCTCGAGCGCGGAG
CAAGCCCTGGGGAGAGGGACGCGAATGGCGATGCCCCTCTCCATCTCGCC
GCTATTCGCGGAGACGACAAGATGGTCCGCATGCTGCTATCCCACGGGGC
CGACGCAAATCAGCAGGACAGCAAGCGCCGCACTCCGCTCCACCTAGCGG
CGAGGCACGGCCAAGCCAGGGCGGCTGAGGCGTTGCTCTCGGGAGGGGCC
TGGGTGAGCCCCTTCTGCGACTCGGACGGTTTCTCACCGCTACAGCTCGC
CGTCCAGCACGGACATTTGAATTTGCTGGCGGTGCTGGCCAAGCACGGAG
CGGACATCGACGTCGCTTCCACCTCAGGAGTGTCGGCGATGCACCTCGCG
GCGAGCAGGGGCATGCCGGGAGTGCTCCGCTCTCTCGCCGAGGCCGGAGC
CGACATAGAAGCTCGGGATAAAGGCGGGTCGACAGCCCTGCACGTCGCCG
CCGAGCACGGCGCTAGTGTCTCCGTCGACACACTTCTGGCGCTCGGAGCC
AGCACGCGCAAATTAACCCGGACCGGGTTCTCGCCGCTCTGCCTAGCGGC
CAAGGAGGGCCACATCCGCTCCACGATCGCGCTCCTGGCGGCCGGGCCCA
AGACCGCCGTGGACGACCGCAGGGGCGGCGGGGCCTCTCCCCTGGAGTGG
GCCGCTTGCAACGGGTACGCGGACGTCGTGAGAGCGTTGTTGATGCACGG
AGCGGACGTGAACAGCTCGAGCTCTCCCGACCAGCCGGCGCTGCACCGCG
CTGCCGACGAGGGCCACCTCGACGTTCTGAATGCCTTGATCAAGAACGGC
GCTGACTTGGACGCCGTCGACGCGGACGGCGAGACGGCCCTGCACCACGC
GGCGACCTTCAACCAGGCCGGGGCGATCGATGTCCTCGCCCGGGCCGGGT
GCGACATCGAAGCGCGGGGCGAGGAGCTGTTCACCCCTCTCCACCTCGCC
TGCCGCTTCCTCAAGCGCGAGGCCGCGGAAGCCCTGCTCAAGCTCGGGGC
GGACGTCCAGACGCGGGACGAGAAGGGATTCACTCCCTTGCACTCGGCCG
CGGCGAACGGGAGGAACGCCGGCACGAACCGCATGGTGCGCTTGCTGCTG
AACTTTGGCGCCGATGAGGCGGCGGTGACTGCGGATGGGTGTACGGCGTT
TGACACGGTTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10563:4526..5938+

>mRNA_M-pyrifera_M_contig10563.1205.1 ID=mRNA_M-pyrifera_M_contig10563.1205.1|Name=mRNA_M-pyrifera_M_contig10563.1205.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2826bp|location=Sequence derived from alignment at M-pyrifera_M_contig10563:4526..5938+ (Macrocystis pyrifera P11B4 male)
ATGCTGGACAGGGATCAAAGGCGCAGTTTCCTGGACGACAACGAAGCTCG
TCTTTTCGACCTAGTTTTCGACCGAGCCACACCGGAACAGTTGGCGCAAT
GGTTACGGTTGCTGCTGGAGGTGTCTGCGGACACAGGTGACCTCAACCTC
GTCTCGACGCTGCAGAACGCTGGGGCTGAAGGGAGCACCATGCACCTGGC
TGTCCGGGGCCGTCACGGTATGCTCGTGGCGGACCTTCTCGAGCGCGGAG
CAAGCCCTGGGGAGAGGGACGCGAATGGCGATGCCCCTCTCCATCTCGCC
GCTATTCGCGGAGACGACAAGATGGTCCGCATGCTGCTATCCCACGGGGC
CGACGCAAATCAGCAGGACAGCAAGCGCCGCACTCCGCTCCACCTAGCGG
CGAGGCACGGCCAAGCCAGGGCGGCTGAGGCGTTGCTCTCGGGAGGGGCC
TGGGTGAGCCCCTTCTGCGACTCGGACGGTTTCTCACCGCTACAGCTCGC
CGTCCAGCACGGACATTTGAATTTGCTGGCGGTGCTGGCCAAGCACGGAG
CGGACATCGACGTCGCTTCCACCTCAGGAGTGTCGGCGATGCACCTCGCG
GCGAGCAGGGGCATGCCGGGAGTGCTCCGCTCTCTCGCCGAGGCCGGAGC
CGACATAGAAGCTCGGGATAAAGGCGGGTCGACAGCCCTGCACGTCGCCG
CCGAGCACGGCGCTAGTGTCTCCGTCGACACACTTCTGGCGCTCGGAGCC
AGCACGCGCAAATTAACCCGGACCGGGTTCTCGCCGCTCTGCCTAGCGGC
CAAGGAGGGCCACATCCGCTCCACGATCGCGCTCCTGGCGGCCGGGCCCA
AGACCGCCGTGGACGACCGCAGGGGCGGCGGGGCCTCTCCCCTGGAGTGG
GCCGCTTGCAACGGGTACGCGGACGTCGTGAGAGCGTTGTTGATGCACGG
AGCGGACGTGAACAGCTCGAGCTCTCCCGACCAGCCGGCGCTGCACCGCG
CTGCCGACGAGGGCCACCTCGACGTTCTGAATGCCTTGATCAAGAACGGC
GCTGACTTGGACGCCGTCGACGCGGACGGCGAGACGGCCCTGCACCACGC
GGCGACCTTCAACCAGGCCGGGGCGATCGATGTCCTCGCCCGGGCCGGGT
GCGACATCGAAGCGCGGGGCGAGGAGCTGTTCACCCCTCTCCACCTCGCC
TGCCGCTTCCTCAAGCGCGAGGCCGCGGAAGCCCTGCTCAAGCTCGGGGC
GGACGTCCAGACGCGGGACGAGAAGGGATTCACTCCCTTGCACTCGGCCG
CGGCGAACGGGAGGAACGCCGGCACGAACCGCATGGTGCGCTTGCTGCTG
AACTTTGGCGCCGATGAGGCGGCGGTGACTGCGGATGGGTGTACGGCGTT
TGACACGGTTGGGATGCTGGACAGGGATCAAAGGCGCAGTTTCCTGGACG
ACAACGAAGCTCGTCTTTTCGACCTAGTTTTCGACCGAGCCACACCGGAA
CAGTTGGCGCAATGGTTACGGTTGCTGCTGGAGGTGTCTGCGGACACAGG
TGACCTCAACCTCGTCTCGACGCTGCAGAACGCTGGGGCTGAAGGGAGCA
CCATGCACCTGGCTGTCCGGGGCCGTCACGGTATGCTCGTGGCGGACCTT
CTCGAGCGCGGAGCAAGCCCTGGGGAGAGGGACGCGAATGGCGATGCCCC
TCTCCATCTCGCCGCTATTCGCGGAGACGACAAGATGGTCCGCATGCTGC
TATCCCACGGGGCCGACGCAAATCAGCAGGACAGCAAGCGCCGCACTCCG
CTCCACCTAGCGGCGAGGCACGGCCAAGCCAGGGCGGCTGAGGCGTTGCT
CTCGGGAGGGGCCTGGGTGAGCCCCTTCTGCGACTCGGACGGTTTCTCAC
CGCTACAGCTCGCCGTCCAGCACGGACATTTGAATTTGCTGGCGGTGCTG
GCCAAGCACGGAGCGGACATCGACGTCGCTTCCACCTCAGGAGTGTCGGC
GATGCACCTCGCGGCGAGCAGGGGCATGCCGGGAGTGCTCCGCTCTCTCG
CCGAGGCCGGAGCCGACATAGAAGCTCGGGATAAAGGCGGGTCGACAGCC
CTGCACGTCGCCGCCGAGCACGGCGCTAGTGTCTCCGTCGACACACTTCT
GGCGCTCGGAGCCAGCACGCGCAAATTAACCCGGACCGGGTTCTCGCCGC
TCTGCCTAGCGGCCAAGGAGGGCCACATCCGCTCCACGATCGCGCTCCTG
GCGGCCGGGCCCAAGACCGCCGTGGACGACCGCAGGGGCGGCGGGGCCTC
TCCCCTGGAGTGGGCCGCTTGCAACGGGTACGCGGACGTCGTGAGAGCGT
TGTTGATGCACGGAGCGGACGTGAACAGCTCGAGCTCTCCCGACCAGCCG
GCGCTGCACCGCGCTGCCGACGAGGGCCACCTCGACGTTCTGAATGCCTT
GATCAAGAACGGCGCTGACTTGGACGCCGTCGACGCGGACGGCGAGACGG
CCCTGCACCACGCGGCGACCTTCAACCAGGCCGGGGCGATCGATGTCCTC
GCCCGGGCCGGGTGCGACATCGAAGCGCGGGGCGAGGAGCTGTTCACCCC
TCTCCACCTCGCCTGCCGCTTCCTCAAGCGCGAGGCCGCGGAAGCCCTGC
TCAAGCTCGGGGCGGACGTCCAGACGCGGGACGAGAAGGGATTCACTCCC
TTGCACTCGGCCGCGGCGAACGGGAGGAACGCCGGCACGAACCGCATGGT
GCGCTTGCTGCTGAACTTTGGCGCCGATGAGGCGGCGGTGACTGCGGATG
GGTGTACGGCGTTTGACACGGTTGGG
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