mRNA_M-pyrifera_M_contig105567.1195.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105567.1195.1
Unique NamemRNA_M-pyrifera_M_contig105567.1195.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: A0A8B8C6Z4_CRAVI (Phosphodiesterase delta-like protein n=3 Tax=Crassostrea TaxID=6564 RepID=A0A8B8C6Z4_CRAVI)

HSP 1 Score: 128 bits (322), Expect = 5.880e-36
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            AR+PK+IL+C +V+REI FSSK A++KF L QRV F G C+EEW FEFGFVIPGSTN+W+  I++A E  M+PA VL+G ++IET F DG  +V K+ V+IFY
Sbjct:   44 ARVPKKILKCRAVSREINFSSKEAMDKFRLEQRVLFKGKCLEEWFFEFGFVIPGSTNTWQSVIEAAPESQMMPANVLTGNVIIETHFFDGDLLVSKSKVKIFY 146          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: L1ITV1_GUITC (GMP_PDE_delta domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1ITV1_GUITC)

HSP 1 Score: 127 bits (320), Expect = 1.590e-35
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKEMLPAAVLSGKLVIETLFLDGKEIVGKASVRIFYE 318
            A +P++IL C SV+RE+ FSS   ++ F LLQ++YF G+C EEW F+FGFV+P STNSW+ TI++A EMLPA +LSG + IE+ F DG+ ++ K+ +R+FYE
Sbjct:   56 AHVPREILACKSVSREVRFSSVEKMDDFKLLQKIYFQGSCFEEWFFKFGFVMPNSTNSWQSTIEAAPEMLPAEILSGNVTIESNFFDGERLLAKSLIRVFYE 157          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: V4BQV6_LOTGI (Phosphodiesterase delta-like protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BQV6_LOTGI)

HSP 1 Score: 127 bits (318), Expect = 2.380e-35
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            AR+PK+IL+C +V+RE+ FSSK A+EKF L QRV F G C+E+W FEFGFVIPGSTN+W+  I++A E  M+PA++L+G ++IET F DG  +V  + VRIFY
Sbjct:   44 ARVPKKILKCRAVSRELNFSSKEAMEKFRLEQRVLFKGKCLEDWFFEFGFVIPGSTNTWQSVIEAAPESQMMPASILNGNVLIETRFFDGDLLVSTSKVRIFY 146          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: UPI001EB082EA (retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB082EA)

HSP 1 Score: 127 bits (318), Expect = 2.380e-35
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            AR+PK+IL+C +V+RE+ FSS+ A+EKF L QRV F G C+EEW FEFGFVIPGSTN+W+  I++A E  M+PA VL+G +VIET F DG  +V  + VRIFY
Sbjct:   44 ARVPKKILKCRAVSRELNFSSQEAMEKFRLEQRVLFKGKCLEEWYFEFGFVIPGSTNTWQSVIEAAPESQMMPANVLNGNVVIETNFFDGDMMVSTSKVRIFY 146          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: D7FJM2_ECTSI (GMP_PDE_delta domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.070e-35
Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFYE 318
            A +P++ILECS+V+REI F+S+  I +F L QRV+  G CIEEW F+FGFVIPGSTNSW+QTI+SA E  ML A  LSG++ IET FLDG+ ++ K  VRIFYE
Sbjct:   29 ATVPRRILECSAVSREINFTSQEEIRQFRLEQRVFLAGACIEEWFFDFGFVIPGSTNSWQQTIESAGEDRMLAAEDLSGRMTIETTFLDGRTMLFKTLVRIFYE 132          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: UPI001E1E07E9 (retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E07E9)

HSP 1 Score: 125 bits (315), Expect = 6.790e-35
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            AR+PK+IL+C +V+REI FSSK A+EKF L Q+V F G C+EEW FEFGFVIPGSTN+W+  I++A E  M+PA VL+G +VIET F D   +V  + VRIFY
Sbjct:   44 ARVPKKILKCRAVSREINFSSKEAMEKFRLEQKVLFKGKCLEEWLFEFGFVIPGSTNTWQSVIEAAPESQMMPANVLNGNVVIETRFYDDAVLVSTSKVRIFY 146          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: UPI000D738A8E (retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta-like isoform X1 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D738A8E)

HSP 1 Score: 125 bits (315), Expect = 6.790e-35
Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            AR+PK+IL+C +V+REI FSSK A++KF L Q+V F G C+EEW FEFGFVIPGSTN+W+  I++A E  M+PA VL+G ++IET F DG  +V  + VR+FY
Sbjct:   44 ARVPKKILKCRAVSREINFSSKEAMDKFRLEQKVLFKGKCLEEWYFEFGFVIPGSTNTWQSVIEAAPENQMMPANVLNGNVMIETCFYDGDLLVSTSKVRVFY 146          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: A0A7R9GG15_9CRUS (Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GG15_9CRUS)

HSP 1 Score: 125 bits (314), Expect = 9.630e-35
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            AR+P++IL C SV+REI FSS  A+EKF L QRV F G C+EEW FEFGFVIP STN+W+  I++A E  M+PA VLSG +VIET F DG  +V  ++VR+FY
Sbjct:   44 ARVPRKILSCRSVSREINFSSAQAMEKFRLEQRVLFKGTCLEEWFFEFGFVIPNSTNTWQSVIEAAPEAQMMPANVLSGNVVIETKFFDGDLLVSTSNVRLFY 146          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: A0A5E4AKI9_MARMO (Retinal rod rhodopsin-sensitive cGMP 3' 5'-cyclic phosphodiesterase subunit delta n=1 Tax=Marmota monax TaxID=9995 RepID=A0A5E4AKI9_MARMO)

HSP 1 Score: 124 bits (311), Expect = 1.200e-34
Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 FLSAARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKE--MLPAAVLSGKLVIETLFLDGKEIVGKASVRIFY 315
            FL +AR+PK+IL+C +V+RE+ FSS   +EKF L Q+VYF G C+EEW FEFGFVIP STN+W+  I++A E  M+PA+VL+G ++IET F D   +V  + VR+FY
Sbjct:   12 FLLSARVPKKILKCKAVSRELNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFY 118          
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Match: A0A7S2CPL1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPL1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.260e-34
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 1
Query:   13 ARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPFEFGFVIPGSTNSWEQTIDSAKEMLPAAVLSGKLVIETLFLDGKEIVGKASVRIFYE 318
            A +PK IL C +++REI F++   +  F L QR++F+G C+EEW F+FGFVIPGSTNSW+Q+I++A +M+PA +LSG +VIET F DG ++V K  VR+FY+
Sbjct:  105 AHVPKAILSCRAISREINFTAAKELRNFRLEQRIFFNGQCMEEWLFDFGFVIPGSTNSWQQSIEAADQMMPAELLSGNIVIETKFFDGDDLVIKFDVRVFYD 206          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105567.1195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B8C6Z4_CRAVI5.880e-3660.19Phosphodiesterase delta-like protein n=3 Tax=Crass... [more]
L1ITV1_GUITC1.590e-3553.92GMP_PDE_delta domain-containing protein n=2 Tax=Ge... [more]
V4BQV6_LOTGI2.380e-3558.25Phosphodiesterase delta-like protein n=1 Tax=Lotti... [more]
UPI001EB082EA2.380e-3560.19retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic ... [more]
D7FJM2_ECTSI3.070e-3561.54GMP_PDE_delta domain-containing protein n=1 Tax=Ec... [more]
UPI001E1E07E96.790e-3560.19retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic ... [more]
UPI000D738A8E6.790e-3558.25retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic ... [more]
A0A7R9GG15_9CRUS9.630e-3560.19Probable cGMP 3',5'-cyclic phosphodiesterase subun... [more]
A0A5E4AKI9_MARMO1.200e-3455.14Retinal rod rhodopsin-sensitive cGMP 3' 5'-cyclic ... [more]
A0A7S2CPL1_9STRA1.260e-3453.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105567contigM-pyrifera_M_contig105567:158..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog55529.EKX39668
KEGG rclassRC00296
KEGG koko:K13758
KEGG ReactionR01234
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG4038@1,KOG4038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.3049479-CDS-M-pyrifera_M_contig105567:157..3391622815564.3049479-CDS-M-pyrifera_M_contig105567:157..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105567 158..339 -
1692277465.891902-CDS-M-pyrifera_M_contig105567:157..3391692277465.891902-CDS-M-pyrifera_M_contig105567:157..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105567 158..339 -
1622815564.3178113-CDS-M-pyrifera_M_contig105567:440..5791622815564.3178113-CDS-M-pyrifera_M_contig105567:440..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105567 441..579 -
1692277465.9039931-CDS-M-pyrifera_M_contig105567:440..5791692277465.9039931-CDS-M-pyrifera_M_contig105567:440..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105567 441..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105567.1195.1prot_M-pyrifera_M_contig105567.1195.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105567 158..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105567.1195.1

>prot_M-pyrifera_M_contig105567.1195.1 ID=prot_M-pyrifera_M_contig105567.1195.1|Name=mRNA_M-pyrifera_M_contig105567.1195.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
FLSAARIPKQILECSSVAREIVFSSKCAIEKFHLLQRVYFDGNCIEEWPF
EFGFVIPGSTNSWEQTIDSAKEMLPAAVLSGKLVIETLFLDGKEIVGKAS
VRIFYE*
back to top

mRNA from alignment at M-pyrifera_M_contig105567:158..579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105567.1195.1 ID=mRNA_M-pyrifera_M_contig105567.1195.1|Name=mRNA_M-pyrifera_M_contig105567.1195.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=422bp|location=Sequence derived from alignment at M-pyrifera_M_contig105567:158..579- (Macrocystis pyrifera P11B4 male)
TTTTTGAGTGCAGCTAGAATACCAAAACAGATATTGGAGTGTTCATCTGT TGCAAGAGAAATTGTGTTTTCTTCTAAATGTGCTATTGAGAAATTCCACC TTCTCCAAAGGGTATATTTTGACGGAAACTGCATTGAAGGTAAGGGATTG GGTTCTGGGGGGTTGTGGGGAGAGTTTGATCGTTCTGTCATCACCCACAT CTCTATTGCTTTCGTTTCTACTTCTCTCTCAACGTCGCAGAATGGCCATT TGAGTTTGGGTTCGTGATTCCTGGATCGACCAATTCGTGGGAACAGACGA TTGATAGCGCCAAGGAAATGCTTCCTGCCGCAGTCTTGAGTGGCAAGTTG GTCATTGAAACTCTCTTCCTGGATGGGAAGGAGATTGTAGGGAAAGCTTC TGTTCGAATTTTCTACGAATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105567:158..579-

>mRNA_M-pyrifera_M_contig105567.1195.1 ID=mRNA_M-pyrifera_M_contig105567.1195.1|Name=mRNA_M-pyrifera_M_contig105567.1195.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig105567:158..579- (Macrocystis pyrifera P11B4 male)
TTTTTGAGTGCAGCTAGAATACCAAAACAGATATTGGAGTGTTCATCTGT
TGCAAGAGAAATTGTGTTTTCTTCTAAATGTGCTATTGAGAAATTCCACC
TTCTCCAAAGGGTATATTTTGACGGAAACTGCATTGAAGTTTTTGAGTGC
AGCTAGAATACCAAAACAGATATTGGAGTGTTCATCTGTTGCAAGAGAAA
TTGTGTTTTCTTCTAAATGTGCTATTGAGAAATTCCACCTTCTCCAAAGG
GTATATTTTGACGGAAACTGCATTGAAGAATGGCCATTTGAGTTTGGGTT
CGTGATTCCTGGATCGACCAATTCGTGGGAACAGACGATTGATAGCGCCA
AGGAAATGCTTCCTGCCGCAGTCTTGAGTGGCAAGTTGGTCATTGAAACT
CTCTTCCTGGATGGGAAGGAGATTGTAGGGAAAGCTTCTGTTCGAATTTT
CTACGAATAAAATGGCCATTTGAGTTTGGGTTCGTGATTCCTGGATCGAC
CAATTCGTGGGAACAGACGATTGATAGCGCCAAGGAAATGCTTCCTGCCG
CAGTCTTGAGTGGCAAGTTGGTCATTGAAACTCTCTTCCTGGATGGGAAG
GAGATTGTAGGGAAAGCTTCTGTTCGAATTTTCTACGAATAA
back to top