mRNA_M-pyrifera_M_contig105522.1181.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105522.1181.1
Unique NamemRNA_M-pyrifera_M_contig105522.1181.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A350PH93_9BACT (Big-1 domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PH93_9BACT)

HSP 1 Score: 329 bits (843), Expect = 5.510e-110
Identity = 162/212 (76.42%), Postives = 181/212 (85.38%), Query Frame = 1
Query:    1 TIIIDEG-WQFFDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQGNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEAFGSSFSFDYKYQPSGSNQFEEIEPLIPDTLLIVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEAAMGGGLNANSVITTS 633
            TII DEG WQFFDFST+SVSNQE N GFVADFRGTS+EGVNFGREGAP+I GNRIILLSGE LES+S IPSWT+E PWIGT+W++ NGT GQPI  GQLWGVYTSEGHYAAMEITEVPEAFG+SFSF YKYQPSGSNQFEE+EPLIP  LL VSG++Q GN    L QPLMV+V DEN   +EG++VNF ++KLPEAAM  GL+ANSV T S
Sbjct:   68 TIIKDEGAWQFFDFSTQSVSNQEENGGFVADFRGTSNEGVNFGREGAPSISGNRIILLSGENLESVSEIPSWTNEEPWIGTTWDFSNGTGGQPISAGQLWGVYTSEGHYAAMEITEVPEAFGTSFSFKYKYQPSGSNQFEEVEPLIPSALLKVSGDEQIGNPEKALAQPLMVQVVDENETPVEGISVNFAVTKLPEAAMSWGLSANSVTTNS 279          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A3D2IC85_9BACT (Big-1 domain-containing protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D2IC85_9BACT)

HSP 1 Score: 312 bits (799), Expect = 7.070e-102
Identity = 151/197 (76.65%), Postives = 170/197 (86.29%), Query Frame = 1
Query:    1 TIIIDEG-WQFFDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQGNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEAFGSSFSFDYKYQPSGSNQFEEIEPLIPDTLLIVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEA 588
            TII DEG WQFFDFST+SVSNQE N GFVADFRGTS+EGVNFGREGAP+I GNR+ILLSGE LES+S IPSWT+E PWIGT+W++ NGT GQPI  GQLWGVYTSEGHYAAMEITEVPEAFG+SFSF YKYQPSGSNQFEE+EPLIP  LL VSG++Q GN    L QPLMV+V DEN   +EG++VNF ++KLPEA
Sbjct:  298 TIIKDEGAWQFFDFSTQSVSNQEENGGFVADFRGTSNEGVNFGREGAPSISGNRVILLSGENLESVSEIPSWTNEEPWIGTTWDFSNGTGGQPISAGQLWGVYTSEGHYAAMEITEVPEAFGASFSFTYKYQPSGSNQFEEVEPLIPSALLKVSGDEQIGNPEKALAQPLMVQVVDENETPVEGISVNFAVTKLPEA 494          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A3D4UUR6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D4UUR6_9BACT)

HSP 1 Score: 328 bits (842), Expect = 2.130e-101
Identity = 161/212 (75.94%), Postives = 181/212 (85.38%), Query Frame = 1
Query:    1 TIIIDEG-WQFFDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQGNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEAFGSSFSFDYKYQPSGSNQFEEIEPLIPDTLLIVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEAAMGGGLNANSVITTS 633
            TII DEG WQFFDFST+SVSNQE N GFVADFRGTS+EGVNFGREGAP+I GNR+ILLSGE LES+S IPSWT+E PWIGT+W++ NGT GQPI  GQLWGVYTSEGHYAAMEITEVPEAFG+SFSF YKYQPSGSNQFEE+EPLIP  LL VSG++Q GN    L QPLMV+V DEN   +EG++VNF ++KLPEAAM  GL+ANSV T S
Sbjct:  665 TIIKDEGAWQFFDFSTQSVSNQEENGGFVADFRGTSNEGVNFGREGAPSISGNRVILLSGENLESVSEIPSWTNEEPWIGTTWDFSNGTGGQPISAGQLWGVYTSEGHYAAMEITEVPEAFGASFSFTYKYQPSGSNQFEEVEPLIPSALLKVSGDEQIGNPEKALAQPLMVQVVDENETPVEGISVNFAVTKLPEAAMSWGLSANSVTTNS 876          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A1B6Y6C0_9BACT (Uncharacterized protein n=6 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y6C0_9BACT)

HSP 1 Score: 318 bits (816), Expect = 4.700e-97
Identity = 156/212 (73.58%), Postives = 181/212 (85.38%), Query Frame = 1
Query:    1 TIIIDEG-WQFFDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQGNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEAFGSSFSFDYKYQPSGSNQFEEIEPLIPDTLLIVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEAAMGGGLNANSVITTS 633
            TII DEG WQFFDFST+SVSNQE N GFVADFRGTS+EGVNFG E A +IQG R+ILL+G+GLES+SSIPSWT+E PWIGT+W++ NGT GQPI VGQLWGVYTSEGHYAAMEITEVPEAFG+SFSF YKYQPSGSNQFEE+EPLIP  ++ VSG++Q GN    L QPLMV+V DEN   +EG++VNF ++K+PEAAM  GL+ANSV T S
Sbjct:  665 TIIKDEGAWQFFDFSTQSVSNQEENGGFVADFRGTSNEGVNFGGELASSIQGKRVILLNGDGLESVSSIPSWTNEEPWIGTTWDFSNGTGGQPISVGQLWGVYTSEGHYAAMEITEVPEAFGTSFSFTYKYQPSGSNQFEEVEPLIPSAIVKVSGDEQIGNPEKALAQPLMVQVVDENETPVEGISVNFAVTKVPEAAMSWGLSANSVTTNS 876          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A350PH94_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PH94_9BACT)

HSP 1 Score: 165 bits (417), Expect = 2.550e-44
Identity = 91/207 (43.96%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   31 FDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQ--GNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEA-FGSSFSFDYKYQPSGSNQFEEIEPLIPDTLL---IVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEAAMGGGLNANSVITTS 633
            FD S +     E    ++ DF   ++EGVNFG EG+ ++   G R +L+    L+++ S+P+ TD APW+  S+++ +GT GQPI VGQLWG+YT EG YAA+EIT +P   FGSSF F YKYQP GS  FEE     PD +L   I SGN+QT +++S    P++V + D +G+ + G TVNFEI+  P      G+N    +T S
Sbjct:  201 FDLSGEISGELEDAGDYLPDFVFVNNEGVNFGNEGSTSLSSTGRRFLLIGTGNLDTLKSVPARTDAAPWVSVSYDFSDGTGGQPISVGQLWGIYTREGKYAAIEITALPGGNFGSSFDFKYKYQPDGSRFFEETGSNEPDPVLSIAIESGNNQTADLSSQPSNPIVVLITDRDGEVVSGETVNFEITNDPI-----GVNEEGTVTPS 402          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A351BW87_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A351BW87_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.770e-38
Identity = 69/141 (48.94%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   28 FFDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQGNRIILLSGEG-LESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEA-----FGSSFSFDYKYQPSGSNQFEEIEPL 432
            +FDFS++S SN      F+ADFRGTS+EG+NFG E    I G R +  +  G L++++++P WT  APW+  SW+WPNGT GQP++VG+LW VYT EGHYA MEIT    +     FG+ F F YKYQP+G+     + P+
Sbjct:   46 YFDFSSQSSSNDSTGTNFLADFRGTSNEGLNFGAENTQ-IPGRRYLRYAINGNLDTVTTVPEWTGLAPWVTVSWDWPNGTSGQPVKVGELWVVYTREGHYACMEITYTDSSNGQPGFGTYFKFRYKYQPNGTRNLTGVIPV 185          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A5E8AWF9_9BACT (Uncharacterized protein n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E8AWF9_9BACT)

HSP 1 Score: 142 bits (359), Expect = 1.450e-35
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 1
Query:   31 FDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQ--GNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEA-FGSSFSFDYKYQPSGSNQFE 417
            FDFS +  + +E +  ++ DF   S+EGVN G EG+ ++   G R +L+    +ES++ +   T+ +PW+  SW+WP+GTQG PI VGQLWGVYT EGHYA MEIT +P+  FG+SF+FDYKYQP GS  F+
Sbjct:   61 FDFSREETAGKEDDADYLVDFVFVSNEGVNLGNEGSTSLNSTGRRFLLIGTGDIESVTEVAERTNASPWVTVSWDWPDGTQGAPISVGQLWGVYTREGHYAVMEITGLPDGGFGTSFTFDYKYQPDGSRFFD 192          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A2D9FWF3_9BACT (Dockerin domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FWF3_9BACT)

HSP 1 Score: 108 bits (271), Expect = 7.860e-24
Identity = 60/152 (39.47%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   31 FDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQ--GNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWGVYTSEGHYAAMEITEVPEA-FGSSFSFDYKYQPSGSNQFE---EIEPLIPDTLLIVSGND 468
            FDFS +  ++      ++ DF   ++EGVNFG EG+ +I   G R +LL    ++ +  +P+ TD  PW+  S++    T  QPI VGQLW VYT EG+Y  +EIT++P   FGSSF+F+YKY   GS  F    +    IPD + I    +
Sbjct:  196 FDFSREETADNHDAGDYLVDFVFVNNEGVNFGNEGSGSIDSTGRRFLLLGEGSIDEVQEVPARTDAEPWVTVSYD---ATGYQPISVGQLWAVYTREGNYGVIEITDLPGGDFGSSFNFNYKYLDDGSRDFGGSGDTGDPIPDVITIAEARN 344          
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Match: A0A7V9T1A7_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7V9T1A7_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.730e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  400 GSNQFEEIEPLIPDTLLIVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEAAMGGGLNANSVIT 627
            G N  + ++P +P T+ +VSGN QT  V +    PL V V++  G  +EGVTV + +     A+ GG +N  + +T
Sbjct:   18 GCNSSDAVDPNLPKTISLVSGNPQTSTVGTVAVAPLKVVVRNAEGDGVEGVTVTWAV-----ASGGGSVNPQTSLT 88          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105522.1181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A350PH93_9BACT5.510e-11076.42Big-1 domain-containing protein n=1 Tax=Balneola s... [more]
A0A3D2IC85_9BACT7.070e-10276.65Big-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A3D4UUR6_9BACT2.130e-10175.94Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A1B6Y6C0_9BACT4.700e-9773.58Uncharacterized protein n=6 Tax=Bacteroidetes/Chlo... [more]
A0A350PH94_9BACT2.550e-4443.96Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A351BW87_9BACT1.770e-3848.94Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
A0A5E8AWF9_9BACT1.450e-3550.00Uncharacterized protein n=1 Tax=Imperialibacter sp... [more]
A0A2D9FWF3_9BACT7.860e-2439.47Dockerin domain-containing protein n=1 Tax=Balneol... [more]
A0A7V9T1A7_9BACT1.730e-535.53Uncharacterized protein n=1 Tax=Gemmatimonadales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105522contigM-pyrifera_M_contig105522:2..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.4313545-CDS-M-pyrifera_M_contig105522:1..6341622815563.4313545-CDS-M-pyrifera_M_contig105522:1..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105522 2..634 +
1692277465.6485412-CDS-M-pyrifera_M_contig105522:1..6341692277465.6485412-CDS-M-pyrifera_M_contig105522:1..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105522 2..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105522.1181.1prot_M-pyrifera_M_contig105522.1181.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105522 2..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105522.1181.1

>prot_M-pyrifera_M_contig105522.1181.1 ID=prot_M-pyrifera_M_contig105522.1181.1|Name=mRNA_M-pyrifera_M_contig105522.1181.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
TIIIDEGWQFFDFSTKSVSNQEVNDGFVADFRGTSDEGVNFGREGAPTIQ
GNRIILLSGEGLESISSIPSWTDEAPWIGTSWEWPNGTQGQPIEVGQLWG
VYTSEGHYAAMEITEVPEAFGSSFSFDYKYQPSGSNQFEEIEPLIPDTLL
IVSGNDQTGNVNSTLFQPLMVEVQDENGQKIEGVTVNFEISKLPEAAMGG
GLNANSVITTS
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mRNA from alignment at M-pyrifera_M_contig105522:2..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105522.1181.1 ID=mRNA_M-pyrifera_M_contig105522.1181.1|Name=mRNA_M-pyrifera_M_contig105522.1181.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig105522:2..634+ (Macrocystis pyrifera P11B4 male)
ACTATAATCATTGATGAAGGATGGCAGTTTTTCGATTTCTCAACAAAATC TGTGTCAAATCAAGAAGTAAACGATGGGTTTGTAGCTGATTTTAGAGGTA CCAGCGATGAAGGAGTAAACTTTGGTAGAGAAGGTGCCCCAACCATTCAG GGGAACAGAATTATCCTGCTTTCCGGAGAAGGATTGGAAAGCATCTCAAG TATACCAAGCTGGACAGATGAAGCTCCATGGATTGGCACCAGTTGGGAAT GGCCAAACGGTACTCAGGGACAACCTATCGAGGTTGGACAACTTTGGGGA GTATATACTAGCGAAGGACATTATGCGGCCATGGAAATAACGGAAGTACC TGAGGCATTTGGATCAAGCTTCTCGTTCGACTATAAATACCAACCAAGCG GTTCTAATCAATTTGAAGAAATTGAACCTTTGATACCTGATACACTCTTA ATTGTATCAGGAAATGACCAAACTGGAAACGTGAATTCAACTTTATTCCA ACCTTTAATGGTAGAGGTACAAGACGAAAATGGGCAGAAGATAGAAGGAG TTACCGTAAATTTCGAAATCTCAAAACTACCAGAAGCAGCAATGGGCGGA GGTTTAAATGCAAACTCTGTAATTACTACCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105522:2..634+

>mRNA_M-pyrifera_M_contig105522.1181.1 ID=mRNA_M-pyrifera_M_contig105522.1181.1|Name=mRNA_M-pyrifera_M_contig105522.1181.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig105522:2..634+ (Macrocystis pyrifera P11B4 male)
ACTATAATCATTGATGAAGGATGGCAGTTTTTCGATTTCTCAACAAAATC
TGTGTCAAATCAAGAAGTAAACGATGGGTTTGTAGCTGATTTTAGAGGTA
CCAGCGATGAAGGAGTAAACTTTGGTAGAGAAGGTGCCCCAACCATTCAG
GGGAACAGAATTATCCTGCTTTCCGGAGAAGGATTGGAAAGCATCTCAAG
TATACCAAGCTGGACAGATGAAGCTCCATGGATTGGCACCAGTTGGGAAT
GGCCAAACGGTACTCAGGGACAACCTATCGAGGTTGGACAACTTTGGGGA
GTATATACTAGCGAAGGACATTATGCGGCCATGGAAATAACGGAAGTACC
TGAGGCATTTGGATCAAGCTTCTCGTTCGACTATAAATACCAACCAAGCG
GTTCTAATCAATTTGAAGAAATTGAACCTTTGATACCTGATACACTCTTA
ATTGTATCAGGAAATGACCAAACTGGAAACGTGAATTCAACTTTATTCCA
ACCTTTAATGGTAGAGGTACAAGACGAAAATGGGCAGAAGATAGAAGGAG
TTACCGTAAATTTCGAAATCTCAAAACTACCAGAAGCAGCAATGGGCGGA
GGTTTAAATGCAAACTCTGTAATTACTACCTCGACTATAATCATTGATGA
AGGATGGCAGTTTTTCGATTTCTCAACAAAATCTGTGTCAAATCAAGAAG
TAAACGATGGGTTTGTAGCTGATTTTAGAGGTACCAGCGATGAAGGAGTA
AACTTTGGTAGAGAAGGTGCCCCAACCATTCAGGGGAACAGAATTATCCT
GCTTTCCGGAGAAGGATTGGAAAGCATCTCAAGTATACCAAGCTGGACAG
ATGAAGCTCCATGGATTGGCACCAGTTGGGAATGGCCAAACGGTACTCAG
GGACAACCTATCGAGGTTGGACAACTTTGGGGAGTATATACTAGCGAAGG
ACATTATGCGGCCATGGAAATAACGGAAGTACCTGAGGCATTTGGATCAA
GCTTCTCGTTCGACTATAAATACCAACCAAGCGGTTCTAATCAATTTGAA
GAAATTGAACCTTTGATACCTGATACACTCTTAATTGTATCAGGAAATGA
CCAAACTGGAAACGTGAATTCAACTTTATTCCAACCTTTAATGGTAGAGG
TACAAGACGAAAATGGGCAGAAGATAGAAGGAGTTACCGTAAATTTCGAA
ATCTCAAAACTACCAGAAGCAGCAATGGGCGGAGGTTTAAATGCAAACTC
TGTAATTACTACCTCG
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