mRNA_M-pyrifera_M_contig105481.1176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105481.1176.1
Unique NamemRNA_M-pyrifera_M_contig105481.1176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A6I6A9N0_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A9N0_9PLAN)

HSP 1 Score: 211 bits (537), Expect = 1.480e-64
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 1 
Query:    1 KDERMSRIKFEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLKQKSE 339
            KDERMSR+KFEQSRKHAQEAWEVR+N+YYPRGTSDLHELTSAWIMWRSADAELKQ ETTKSSETDRELQAGLDQMLNL+GQIQDRRGRMASDISLVYCLKDAELLAQLKQKSE
Sbjct:  352 KDERMSRMKFEQSRKHAQEAWEVRMNDYYPRGTSDLHELTSAWIMWRSADAELKQSETTKSSETDRELQAGLDQMLNLTGQIQDRRGRMASDISLVYCLKDAELLAQLKQKSE 464
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A518FKG7_9PLAN (Uncharacterized protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FKG7_9PLAN)

HSP 1 Score: 157 bits (397), Expect = 8.400e-44
Identity = 79/113 (69.91%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 KDERMSRIKFEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLKQKSE 339
            KD+R SR  FEQS++HA+ AWEVR+N YYP GT+ LHELTSAWIMWRSAD EL + +T+ S + DR+L AGLD+MLNL+ QI+DRRGRMASDISLV CLKD+ELL +LK+KSE
Sbjct:  352 KDDRRSRAMFEQSQQHAKAAWEVRMNTYYPNGTATLHELTSAWIMWRSADTELNKSDTSTSVKPDRDLTAGLDRMLNLTSQIEDRRGRMASDISLVNCLKDSELLTELKKKSE 464
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A517REI6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517REI6_9PLAN)

HSP 1 Score: 123 bits (308), Expect = 4.860e-31
Identity = 59/104 (56.73%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   16 SRIKFEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLK 327
            SR  F++S +++Q+AW+ R+N YYP GT+ LH+LTSAWIMW ++  E  +LE+  S   +RE+QAGLDQMLN++ +I+DRRGRMASDISLV CLK++E+L + K
Sbjct:  326 SRKYFQESMQYSQDAWKERINVYYPAGTASLHDLTSAWIMWNASGTEYTELESRDSGTINREIQAGLDQMLNIAERIRDRRGRMASDISLVRCLKNSEMLKEFK 429
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A517VYS4_9PLAN (Uncharacterized protein n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VYS4_9PLAN)

HSP 1 Score: 120 bits (300), Expect = 7.000e-30
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   28 FEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLKQK 333
            F +S ++A+ AW +R N+YYP GT+ LH++TS+W+MW++A  EL  L+TT S   D+EL  GLDQMLNL+  I+DRRGR+ SD+SLV+CLK++E L+  K+K
Sbjct:  331 FTESMQYAKAAWNLRANQYYPAGTASLHDVTSSWLMWKAAGTELADLKTTDSQSIDKELNVGLDQMLNLADSIRDRRGRLDSDVSLVHCLKNSEKLSDYKRK 432
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A517V978_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V978_9PLAN)

HSP 1 Score: 111 bits (278), Expect = 1.240e-26
Identity = 47/104 (45.19%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   28 FEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLKQKSE 339
            F +S + ++ AWE+R+++YYPRGT++LH++T++WI+W ++  EL +L++++S+   +EL +GLD+M+N + QI DRRGR+A DIS+V+CLK++E L +L+   +
Sbjct:  355 FNESMQQSKAAWELRIDQYYPRGTANLHDITTSWILWNASGTELSELKSSQSATIKKELTSGLDRMVNTADQITDRRGRLAGDISMVHCLKNSEFLIELENSQK 458
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A2E2C9Y6_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C9Y6_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 1.610e-26
Identity = 51/100 (51.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:   28 FEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLK 327
            F  S + A+ AWE+R+++YYPRGT++LH+LT++WI+W ++ +EL +L+ ++S+   + L AGLD+M+N + QI DRRGRMA DISLV+CLK++E L +L+
Sbjct:  347 FNDSLQQAKSAWELRMDQYYPRGTANLHDLTTSWILWNASGSELSELKPSQSAAIRQALTAGLDRMVNTADQITDRRGRMAGDISLVHCLKNSEFLIELE 446
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BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Match: A0A350K3B5_9PLAN (Uncharacterized protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A350K3B5_9PLAN)

HSP 1 Score: 107 bits (267), Expect = 4.220e-25
Identity = 48/104 (46.15%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:   16 SRIKFEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELKQLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAELLAQLK 327
            SR  F  S + A+ AWE+R+++YYPRGT++LH++T++WI+W ++ + L +L++++S+   + L  GLD+M+N + QI DRRGR+A DIS+V+CLK++E L +L+
Sbjct:  344 SRKFFTDSLQQAKAAWELRIDQYYPRGTANLHDITTSWILWNASGSALSELKSSQSANIKQSLTEGLDRMVNTADQITDRRGRLAGDISMVHCLKNSEFLVELQ 447
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105481.1176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6I6A9N0_9PLAN1.480e-6495.58Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518FKG7_9PLAN8.400e-4469.91Uncharacterized protein n=4 Tax=Gimesia panareensi... [more]
A0A517REI6_9PLAN4.860e-3156.73Uncharacterized protein n=2 Tax=Gimesia alba TaxID... [more]
A0A517VYS4_9PLAN7.000e-3053.92Uncharacterized protein n=3 Tax=Gimesia aquarii Ta... [more]
A0A517V978_9PLAN1.240e-2645.19Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A2E2C9Y6_9PLAN1.610e-2651.00Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A350K3B5_9PLAN4.220e-2546.15Uncharacterized protein n=7 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105481contigM-pyrifera_M_contig105481:3..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.062333-UTR-M-pyrifera_M_contig105481:2..141622815563.062333-UTR-M-pyrifera_M_contig105481:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105481 3..14 +
1692277465.4443374-UTR-M-pyrifera_M_contig105481:2..141692277465.4443374-UTR-M-pyrifera_M_contig105481:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105481 3..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.0731273-CDS-M-pyrifera_M_contig105481:14..3441622815563.0731273-CDS-M-pyrifera_M_contig105481:14..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105481 15..344 +
1692277465.4547071-CDS-M-pyrifera_M_contig105481:14..3441692277465.4547071-CDS-M-pyrifera_M_contig105481:14..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105481 15..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105481.1176.1prot_M-pyrifera_M_contig105481.1176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105481 15..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105481.1176.1

>prot_M-pyrifera_M_contig105481.1176.1 ID=prot_M-pyrifera_M_contig105481.1176.1|Name=mRNA_M-pyrifera_M_contig105481.1176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MSRIKFEQSRKHAQEAWEVRVNEYYPRGTSDLHELTSAWIMWRSADAELK
QLETTKSSETDRELQAGLDQMLNLSGQIQDRRGRMASDISLVYCLKDAEL
LAQLKQKSE*
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mRNA from alignment at M-pyrifera_M_contig105481:3..344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105481.1176.1 ID=mRNA_M-pyrifera_M_contig105481.1176.1|Name=mRNA_M-pyrifera_M_contig105481.1176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig105481:3..344+ (Macrocystis pyrifera P11B4 male)
AAGGACGAGCGGATGAGCCGAATAAAGTTTGAACAGAGCCGGAAGCACGC
ACAAGAGGCTTGGGAAGTAAGAGTGAATGAATACTACCCCCGAGGTACTT
CCGATTTGCATGAACTGACATCTGCCTGGATCATGTGGCGCTCTGCAGAT
GCAGAACTGAAACAGTTAGAGACAACAAAATCGAGTGAGACTGATCGAGA
ATTGCAGGCTGGACTGGACCAGATGTTGAATCTGAGCGGACAGATCCAGG
ATCGCAGAGGTCGTATGGCCAGCGACATTTCACTGGTCTATTGTCTGAAA
GATGCAGAATTACTGGCCCAGCTCAAGCAGAAGTCGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105481:3..344+

>mRNA_M-pyrifera_M_contig105481.1176.1 ID=mRNA_M-pyrifera_M_contig105481.1176.1|Name=mRNA_M-pyrifera_M_contig105481.1176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig105481:3..344+ (Macrocystis pyrifera P11B4 male)
ATGAGCCGAATAAAGTTTGAACAGAGCCGGAAGCACGCACAAGAGGCTTG
GGAAGTAAGAGTGAATGAATACTACCCCCGAGGTACTTCCGATTTGCATG
AACTGACATCTGCCTGGATCATGTGGCGCTCTGCAGATGCAGAACTGAAA
CAGTTAGAGACAACAAAATCGAGTGAGACTGATCGAGAATTGCAGGCTGG
ACTGGACCAGATGTTGAATCTGAGCGGACAGATCCAGGATCGCAGAGGTC
GTATGGCCAGCGACATTTCACTGGTCTATTGTCTGAAAGATGCAGAATTA
CTGGCCCAGCTCAAGCAGAAGTCGGAATAGATGAGCCGAATAAAGTTTGA
ACAGAGCCGGAAGCACGCACAAGAGGCTTGGGAAGTAAGAGTGAATGAAT
ACTACCCCCGAGGTACTTCCGATTTGCATGAACTGACATCTGCCTGGATC
ATGTGGCGCTCTGCAGATGCAGAACTGAAACAGTTAGAGACAACAAAATC
GAGTGAGACTGATCGAGAATTGCAGGCTGGACTGGACCAGATGTTGAATC
TGAGCGGACAGATCCAGGATCGCAGAGGTCGTATGGCCAGCGACATTTCA
CTGGTCTATTGTCTGAAAGATGCAGAATTACTGGCCCAGCTCAAGCAGAA
GTCGGAATAG
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