mRNA_M-pyrifera_M_contig105478.1174.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105478.1174.1
Unique NamemRNA_M-pyrifera_M_contig105478.1174.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A5A8CG16_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CG16_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 1.280e-33
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   73 VPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGVF 363
            +PRL++LAL  IAA+F   P I G++PE+ LAITSSLPLDLD+ V   +V DEHYW+R +LE + W+ CR+E+HGLSWKQLYLER+L+  LE FGVF
Sbjct:   84 IPRLTALALRAIAANFESNPRIEGLAPEYSLAITSSLPLDLDVGVTGPHVHDEHYWKRAALEHKHWRNCRIEDHGLSWKQLYLERHLQDSLEAFGVF 180          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A812VJA6_9DINO (DRC5 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VJA6_9DINO)

HSP 1 Score: 106 bits (264), Expect = 2.990e-24
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   73 VPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGV 360
            VP L+ L+L  IA HF+ +P+I G+ P++ LAITSSL  D+D  V   +V DEHYW+R   +   W  C + +HGLSWKQL+ ER+L +RLE FG 
Sbjct:   72 VPSLTELSLQVIAKHFAEYPNIDGLDPKYVLAITSSLRCDIDPAVTGPHVNDEHYWERVCKDEMGWSTCDIAQHGLSWKQLFFERFLAQRLETFGA 167          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A7S1C834_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C834_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.700e-19
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   55 EERGDGVPR-------LSSLALSCIAAHFSRF-PDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGV 360
            E +GD  P        L+ LAL+ +AA+F +  P++  I  +F  AITS LPLDLDI V +  V DE+YW++   E+++W   ++ +HGLSWKQL+ E  L   LE+FGV
Sbjct:   30 ESKGDDSPPKALVPEPLTLLALNVVAANFEKLQPNLDDIPSKFVAAITSKLPLDLDITVTSPLVNDENYWKQVCTEYKKWDNPQIADHGLSWKQLFFETNLAMELEQFGV 139          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: H3GJR7_PHYRM (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=H3GJR7_PHYRM)

HSP 1 Score: 84.7 bits (208), Expect = 9.260e-17
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   73 VPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGVFGD 369
            +P L  + L  I+  F   P    +  +F   + + LPLDLD+ V A  V DE+YW+R  L   +WK  ++ +HGL+WKQL+LE+YL+  LE+F   GD
Sbjct:   47 IPSLLLMCLKIISDRFRLQPKAQNVPRQFLPEVMARLPLDLDVCVTAPNVTDENYWKRCCLSQTQWKNTQIADHGLTWKQLFLEKYLQDLLEDFDPAGD 145          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A5D6XLJ3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLJ3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.360e-16
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    4 VSAAREGAAAGAEVVESEERGDGVPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGVFGD 369
            V  +  G ++ +  + S   G  +P L  L L  +A  F   P    +  +F   + + LPLDLD+ V+A  V DE+YW+R  +    W+  ++E HGL+WKQLYLE++L+  LE+F    D
Sbjct:   28 VGGSESGKSSASRALPSTHSGQRIPTLLLLCLKTVADRFRADPKAQNVPRKFFPDVMARLPLDLDVCVSAPTVSDENYWKRCCMSKLAWRNLQIEAHGLTWKQLYLEKHLQDVLEDFDAGAD 149          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A0P1AX29_PLAHL (FOG: Leucine rich repeat n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX29_PLAHL)

HSP 1 Score: 81.3 bits (199), Expect = 1.590e-15
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   73 VPRLSSLALSC---IAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEF 354
            +P + SL L C   ++  F+R P    +  EF   + + LPLDLD+ + A  V DE+YW+R  L  ++WK  ++  HGL+WKQL+LE++L+  LE F
Sbjct:   41 IPPIPSLLLMCLKIVSDCFNRHPKAENVPREFLPEVMARLPLDLDVCLTAPNVTDENYWKRCCLSKKQWKNIQITHHGLTWKQLFLEKHLQDLLENF 137          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A421GK20_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GK20_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.240e-15
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   73 VPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEF 354
            +P L  + L  I+  F   P    +  +F   + + LPLDLD+ V A  V DE+YW+R  L   +WK  ++ +HGL+WKQL+LE++L+  LE+F
Sbjct:   47 IPSLLLMCLKIISDRFRLQPKAQNVPRQFLPEVMARLPLDLDVCVTAPCVTDENYWKRCCLSKTQWKNIQITDHGLTWKQLFLEKHLQDLLEDF 140          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A2D4C6H8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6H8_PYTIN)

HSP 1 Score: 78.6 bits (192), Expect = 1.430e-14
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   73 VPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGVFGD 369
            +P L  + L  I+  + + P +  +  +F   + + LPLD+D+ V+A  + DE+YW+R       WK  ++++HGL+WKQ+YLE++L+  LE F    D
Sbjct:   43 IPSLVVMCLKLISDRYRQDPKVYNVPTKFLPEVMARLPLDMDVCVSAPNITDENYWKRCCKHNSAWKNLQIQDHGLTWKQMYLEKHLQDLLEGFDANAD 141          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: A0A8K1FGP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGP6_PYTOL)

HSP 1 Score: 78.2 bits (191), Expect = 1.930e-14
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   73 VPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGVFGD 369
            +P L  L L  I+  F   P I  +  +F   + S LPLD+D+ ++A  + DE+YW+R  +    WK  ++ EHGL+WKQL++E+ L+  LE F    D
Sbjct:   46 IPSLVILCLKVISDKFRLEPKIHNVPRKFLPEVMSRLPLDMDVCISAPNITDENYWKRCCMSKSAWKNLQISEHGLTWKQLFMEKNLQDMLEGFDSSTD 144          
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Match: K3WV20_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV20_GLOUD)

HSP 1 Score: 77.4 bits (189), Expect = 3.640e-14
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   52 SEERGDGVPRLSSLALSCIAAHFSRFPDISGISPEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGLSWKQLYLERYLERRLEEFGVFGD 369
            S   G  +P L  + L  I+  F     +  +  +F   + + LPLDL++ V+A  V DE+YW+R  +    WK  ++E+HGL+WKQL+LE++L+  LE+F    D
Sbjct:   42 SNNGGHPIPSLLLMCLKVISDRFRLESKVHSVPRKFLPDVMARLPLDLNVCVSAPNVSDENYWKRCCMSKLAWKNLQIEDHGLTWKQLFLEKHLQDLLEDFDATTD 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105478.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A5A8CG16_CAFRO1.280e-3361.86Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A812VJA6_9DINO2.990e-2450.00DRC5 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S1C834_9STRA5.700e-1943.64Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
H3GJR7_PHYRM9.260e-1740.40Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A5D6XLJ3_9STRA2.360e-1635.25Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P1AX29_PLAHL1.590e-1540.21FOG: Leucine rich repeat n=1 Tax=Plasmopara halste... [more]
A0A421GK20_9STRA9.240e-1539.36Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
A0A2D4C6H8_PYTIN1.430e-1434.34Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FGP6_PYTOL1.930e-1437.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WV20_GLOUD3.640e-1435.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105478contigM-pyrifera_M_contig105478:254..622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue5e-15
Seed eggNOG ortholog164328.Phyra76427
Preferred nameFAP155
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0097014,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.Leucine Rich repeat
EggNOG OGs3Q78V@4776,COG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.9897497-CDS-M-pyrifera_M_contig105478:253..6221622815562.9897497-CDS-M-pyrifera_M_contig105478:253..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105478 254..622 -
1692277465.419946-CDS-M-pyrifera_M_contig105478:253..6221692277465.419946-CDS-M-pyrifera_M_contig105478:253..622Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105478 254..622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105478.1174.1prot_M-pyrifera_M_contig105478.1174.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105478 254..622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105478.1174.1

>prot_M-pyrifera_M_contig105478.1174.1 ID=prot_M-pyrifera_M_contig105478.1174.1|Name=mRNA_M-pyrifera_M_contig105478.1174.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
RVSAAREGAAAGAEVVESEERGDGVPRLSSLALSCIAAHFSRFPDISGIS
PEFQLAITSSLPLDLDIVVAARYVQDEHYWQRRSLEFERWKGCRVEEHGL
SWKQLYLERYLERRLEEFGVFGD
back to top

mRNA from alignment at M-pyrifera_M_contig105478:254..622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105478.1174.1 ID=mRNA_M-pyrifera_M_contig105478.1174.1|Name=mRNA_M-pyrifera_M_contig105478.1174.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig105478:254..622- (Macrocystis pyrifera P11B4 male)
CGTGTGTCTGCTGCAAGAGAGGGTGCAGCCGCGGGTGCGGAGGTGGTGGA GAGCGAGGAGAGAGGGGACGGCGTTCCTCGTCTGAGTAGCTTGGCATTGT CTTGCATCGCGGCCCACTTTTCTCGTTTCCCGGACATTTCCGGGATTTCT CCCGAGTTCCAGCTCGCGATCACGTCGTCTCTGCCCCTGGATTTGGACAT TGTGGTCGCAGCTCGGTACGTGCAGGATGAGCACTATTGGCAGCGTCGCA GTTTGGAGTTTGAGCGGTGGAAAGGGTGTCGTGTGGAGGAGCATGGGCTG AGCTGGAAGCAGCTGTACCTGGAGCGATACCTGGAGCGTCGTTTGGAGGA ATTCGGGGTGTTTGGAGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105478:254..622-

>mRNA_M-pyrifera_M_contig105478.1174.1 ID=mRNA_M-pyrifera_M_contig105478.1174.1|Name=mRNA_M-pyrifera_M_contig105478.1174.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig105478:254..622- (Macrocystis pyrifera P11B4 male)
CGTGTGTCTGCTGCAAGAGAGGGTGCAGCCGCGGGTGCGGAGGTGGTGGA
GAGCGAGGAGAGAGGGGACGGCGTTCCTCGTCTGAGTAGCTTGGCATTGT
CTTGCATCGCGGCCCACTTTTCTCGTTTCCCGGACATTTCCGGGATTTCT
CCCGAGTTCCAGCTCGCGATCACGTCGTCTCTGCCCCTGGATTTGGACAT
TGTGGTCGCAGCTCGGTACGTGCAGGATGAGCACTATTGGCAGCGTCGCA
GTTTGGAGTTTGAGCGGTGGAAAGGGTGTCGTGTGGAGGAGCATGGGCTG
AGCTGGAAGCAGCTGTACCTGGAGCGATACCTGGAGCGTCGTTTGGAGGA
ATTCGGGGTGTTTGGAGACCGTGTGTCTGCTGCAAGAGAGGGTGCAGCCG
CGGGTGCGGAGGTGGTGGAGAGCGAGGAGAGAGGGGACGGCGTTCCTCGT
CTGAGTAGCTTGGCATTGTCTTGCATCGCGGCCCACTTTTCTCGTTTCCC
GGACATTTCCGGGATTTCTCCCGAGTTCCAGCTCGCGATCACGTCGTCTC
TGCCCCTGGATTTGGACATTGTGGTCGCAGCTCGGTACGTGCAGGATGAG
CACTATTGGCAGCGTCGCAGTTTGGAGTTTGAGCGGTGGAAAGGGTGTCG
TGTGGAGGAGCATGGGCTGAGCTGGAAGCAGCTGTACCTGGAGCGATACC
TGGAGCGTCGTTTGGAGGAATTCGGGGTGTTTGGAGAC
back to top