mRNA_M-pyrifera_M_contig105457.1167.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105457.1167.1
Unique NamemRNA_M-pyrifera_M_contig105457.1167.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A6I6ABJ7_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ABJ7_9PLAN)

HSP 1 Score: 283 bits (724), Expect = 1.070e-91
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDR+RACT DH  +ISIRD+FDESISEQELI QFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDL+AFDRGMGTG
Sbjct:  356 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRIRACTADHKTDISIRDMFDESISEQELIAQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLEAFDRGMGTG 498          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A6C435_9PLAN (Uncharacterized protein n=13 Tax=Planctomycetaceae TaxID=126 RepID=A6C435_9PLAN)

HSP 1 Score: 270 bits (690), Expect = 1.400e-86
Identity = 126/143 (88.11%), Postives = 137/143 (95.80%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+AFKLLLPSDVVYYLQREEKEFYERSRLDKQNL+TSLDWTGESLYDVA DRVRAC  + G+N+SI+DLFD+SISEQELIGQFAQLRVPRHLFKFLYRL+VDHCNRYTVDNP+WKINRET  KV+SLFQRDL+AFDRGMGTG
Sbjct:  356 PGIAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLVTSLDWTGESLYDVACDRVRACAIEPGSNLSIKDLFDDSISEQELIGQFAQLRVPRHLFKFLYRLIVDHCNRYTVDNPNWKINRETQQKVLSLFQRDLEAFDRGMGTG 498          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A517VPH5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPH5_9PLAN)

HSP 1 Score: 266 bits (681), Expect = 3.140e-85
Identity = 126/142 (88.73%), Postives = 133/142 (93.66%), Query Frame = 1
Query:    4 GVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            GVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNL+TSLDWTGESL+DVA DRVRAC TD  +  S+RD FD+SISEQELI  FAQLRVPRHLFKFLYRL+VDHCNRYTVDNPSWKINRETLHKV+SLFQRDLDAFDRGMGTG
Sbjct:  357 GVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLVTSLDWTGESLFDVACDRVRACATDQSSKPSVRDFFDDSISEQELIALFAQLRVPRHLFKFLYRLIVDHCNRYTVDNPSWKINRETLHKVLSLFQRDLDAFDRGMGTG 498          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A2D6SYM4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SYM4_9PLAN)

HSP 1 Score: 227 bits (578), Expect = 9.550e-70
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PGVAFKLLLP++VVYYLQREEK+FYERSRLDKQNLI SLDWTGESLYDV +DR+RACT        IRDLFDESI +QELIG FA+LRVPRHLFKFL+RLLVDHC RYT ++PSW ++RETL   ++++ RDL+AFDRG GTG
Sbjct:  361 PGVAFKLLLPAEVVYYLQREEKQFYERSRLDKQNLILSLDWTGESLYDVTNDRIRACTESSERAAVIRDLFDESIGDQELIGIFARLRVPRHLFKFLHRLLVDHCGRYTEEHPSWTVSRETLQATLAVYLRDLEAFDRGAGTG 503          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A517R387_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R387_9BACT)

HSP 1 Score: 219 bits (558), Expect = 8.550e-67
Identity = 99/143 (69.23%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+AFKLLLP++V YYL REEKEFYERSRLDKQNLI SL+WTGESLYDVA+DR++AC+++ G   SI  LFD+ ++  +LI  F++LRVPRHLFKFLYRLLV+HCNRYT D P W+I+RET    +SL+ RDLDA+DRGMGTG
Sbjct:  358 PGIAFKLLLPAEVTYYLNREEKEFYERSRLDKQNLIPSLEWTGESLYDVAADRLKACSSNEGQAPSINKLFDDQVTRDDLIRSFSKLRVPRHLFKFLYRLLVEHCNRYTEDEPKWEISRETFESQLSLYLRDLDAYDRGMGTG 500          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A517TAW4_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517TAW4_9PLAN)

HSP 1 Score: 217 bits (552), Expect = 6.850e-66
Identity = 101/143 (70.63%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+ FKLLLP++V YYL REEK FYERSRLDKQNLI SLDWTGESLYDV +DR+RAC         + DLFDES+  ++LI  FA+LRVPRHLFKFLYRLLV+HCNR+T D PSWKI RETL   +SL+ RDLDA+DRGMGTG
Sbjct:  359 PGLGFKLLLPAEVTYYLNREEKSFYERSRLDKQNLIMSLDWTGESLYDVVNDRLRACALGGRTPSKLVDLFDESVGREDLIRIFARLRVPRHLFKFLYRLLVEHCNRFTEDEPSWKIGRETLESQLSLYMRDLDAYDRGMGTG 501          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A2E7D1F2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D1F2_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 7.720e-65
Identity = 100/145 (68.97%), Postives = 121/145 (83.45%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTT--DHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+ FKLLLPSDV Y+L REEKEFYERSRLDKQNLI SL+W+GE+LYDVASDR+ AC    D G   ++ DLFDE++S+QELIG F++LRVPRHLFK+L+RLLVDHC+RYT   P WKINRET+   ++L+ RDLD+FDRG GTG
Sbjct:  358 PGLGFKLLLPSDVSYFLDREEKEFYERSRLDKQNLIRSLEWSGEALYDVASDRIGACLGEGDSGKKTALSDLFDEAMSQQELIGVFSRLRVPRHLFKYLHRLLVDHCSRYTEAEPCWKINRETVQTTLALYMRDLDSFDRGAGTG 502          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A3M1UWK0_9BACT (DUF1109 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1UWK0_9BACT)

HSP 1 Score: 214 bits (544), Expect = 1.520e-64
Identity = 97/143 (67.83%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+A KLLLP D+VYYL RE KEFYERSRLDKQNL+ SLDWTGE+LYDVASDR+ AC  D     S+RDLFDE++ ++EL+  FA LRVPRHLFKFL+RLLVDHC+ YT D P WKIN ETL + ++L+ RDL A+D+G GTG
Sbjct:  375 PGLALKLLLPDDLVYYLDRESKEFYERSRLDKQNLVRSLDWTGEALYDVASDRLAACALDPDKRPSVRDLFDETVDQRELVNVFAGLRVPRHLFKFLHRLLVDHCSHYTDDQPQWKINHETLSRTLALYHRDLAAYDKGAGTG 517          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A3B1E0T4_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1E0T4_9ZZZZ)

HSP 1 Score: 213 bits (541), Expect = 2.840e-64
Identity = 94/143 (65.73%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+ FKLLLP++VVYYL RE+K FYERSRLDKQNLI SLDWTG+SLYDV SDRVRACT +     ++ +LFD++++++ELI  FA+LRVPRHLFKF YRLLVDHCN+YT ++P W+I RETL   ++++ +DL+AFDRG GTG
Sbjct:  357 PGIGFKLLLPAEVVYYLNREDKSFYERSRLDKQNLIPSLDWTGQSLYDVTSDRVRACTKEGAKPRAVHELFDDAVTQEELISIFARLRVPRHLFKFFYRLLVDHCNQYTDESPRWQITRETLQSTLAVYLKDLEAFDRGQGTG 499          
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Match: A0A7W0RMF4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0RMF4_9PLAN)

HSP 1 Score: 210 bits (534), Expect = 3.340e-63
Identity = 96/143 (67.13%), Postives = 114/143 (79.72%), Query Frame = 1
Query:    1 PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVASDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRLLVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG 429
            PG+ FKLLLP++V YYL REEKEFYERSRLDKQNL+ SLDWTGESLYDVA+DR++AC   +G    +  LFD+ I  ++L+  FA+LRVPRHLFKFLYRL+V+HCNRYT + P W I RETL     L+ RDLDAFDRGMGTG
Sbjct:  361 PGMGFKLLLPAEVTYYLNREEKEFYERSRLDKQNLVPSLDWTGESLYDVANDRLKACAV-NGQAPKVGTLFDDGIGREQLVPMFARLRVPRHLFKFLYRLMVEHCNRYTEEEPKWTIGRETLESTYGLYMRDLDAFDRGMGTG 502          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105457.1167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6ABJ7_9PLAN1.070e-9194.41Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A6C435_9PLAN1.400e-8688.11Uncharacterized protein n=13 Tax=Planctomycetaceae... [more]
A0A517VPH5_9PLAN3.140e-8588.73Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2D6SYM4_9PLAN9.550e-7074.13Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517R387_9BACT8.550e-6769.23Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517TAW4_9PLAN6.850e-6670.63Uncharacterized protein n=1 Tax=Calycomorphotria h... [more]
A0A2E7D1F2_9PLAN7.720e-6568.97Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3M1UWK0_9BACT1.520e-6467.83DUF1109 domain-containing protein n=1 Tax=Planctom... [more]
A0A3B1E0T4_9ZZZZ2.840e-6465.73Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A7W0RMF4_9PLAN3.340e-6367.13Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105457contigM-pyrifera_M_contig105457:2..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score271.6
Seed ortholog evalue2.2e-70
Seed eggNOG ortholog344747.PM8797T_11254
Hectar predicted targeting categoryother localisation
EggNOG OGs28IWN@1,2IY3S@203682,2Z8UX@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.6264758-CDS-M-pyrifera_M_contig105457:1..4331622815562.6264758-CDS-M-pyrifera_M_contig105457:1..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105457 2..433 +
1692277465.2029905-CDS-M-pyrifera_M_contig105457:1..4331692277465.2029905-CDS-M-pyrifera_M_contig105457:1..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105457 2..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105457.1167.1prot_M-pyrifera_M_contig105457.1167.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105457 2..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105457.1167.1

>prot_M-pyrifera_M_contig105457.1167.1 ID=prot_M-pyrifera_M_contig105457.1167.1|Name=mRNA_M-pyrifera_M_contig105457.1167.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
PGVAFKLLLPSDVVYYLQREEKEFYERSRLDKQNLITSLDWTGESLYDVA
SDRVRACTTDHGANISIRDLFDESISEQELIGQFAQLRVPRHLFKFLYRL
LVDHCNRYTVDNPSWKINRETLHKVMSLFQRDLDAFDRGMGTG*
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mRNA from alignment at M-pyrifera_M_contig105457:2..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105457.1167.1 ID=mRNA_M-pyrifera_M_contig105457.1167.1|Name=mRNA_M-pyrifera_M_contig105457.1167.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig105457:2..433+ (Macrocystis pyrifera P11B4 male)
CCGGGAGTCGCCTTCAAACTGCTGCTCCCTTCAGACGTGGTCTACTACCT GCAGCGCGAAGAGAAAGAATTCTACGAACGCTCGCGACTGGACAAGCAGA ACCTGATCACATCACTGGACTGGACCGGAGAATCGCTGTACGACGTCGCC AGCGACCGCGTGCGGGCCTGCACGACGGATCATGGAGCAAATATCTCCAT CCGTGACCTGTTTGATGAATCCATTTCAGAACAGGAACTGATCGGTCAGT TCGCCCAGTTACGGGTCCCCCGGCACCTGTTTAAGTTCCTGTATCGACTG CTCGTCGATCACTGCAATCGCTATACGGTTGATAATCCCAGCTGGAAAAT CAACCGGGAAACGCTGCATAAAGTGATGAGCCTCTTCCAAAGGGATCTGG ATGCCTTCGATCGAGGCATGGGAACAGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105457:2..433+

>mRNA_M-pyrifera_M_contig105457.1167.1 ID=mRNA_M-pyrifera_M_contig105457.1167.1|Name=mRNA_M-pyrifera_M_contig105457.1167.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig105457:2..433+ (Macrocystis pyrifera P11B4 male)
CCGGGAGTCGCCTTCAAACTGCTGCTCCCTTCAGACGTGGTCTACTACCT
GCAGCGCGAAGAGAAAGAATTCTACGAACGCTCGCGACTGGACAAGCAGA
ACCTGATCACATCACTGGACTGGACCGGAGAATCGCTGTACGACGTCGCC
AGCGACCGCGTGCGGGCCTGCACGACGGATCATGGAGCAAATATCTCCAT
CCGTGACCTGTTTGATGAATCCATTTCAGAACAGGAACTGATCGGTCAGT
TCGCCCAGTTACGGGTCCCCCGGCACCTGTTTAAGTTCCTGTATCGACTG
CTCGTCGATCACTGCAATCGCTATACGGTTGATAATCCCAGCTGGAAAAT
CAACCGGGAAACGCTGCATAAAGTGATGAGCCTCTTCCAAAGGGATCTGG
ATGCCTTCGATCGAGGCATGGGAACAGGTTGACCGGGAGTCGCCTTCAAA
CTGCTGCTCCCTTCAGACGTGGTCTACTACCTGCAGCGCGAAGAGAAAGA
ATTCTACGAACGCTCGCGACTGGACAAGCAGAACCTGATCACATCACTGG
ACTGGACCGGAGAATCGCTGTACGACGTCGCCAGCGACCGCGTGCGGGCC
TGCACGACGGATCATGGAGCAAATATCTCCATCCGTGACCTGTTTGATGA
ATCCATTTCAGAACAGGAACTGATCGGTCAGTTCGCCCAGTTACGGGTCC
CCCGGCACCTGTTTAAGTTCCTGTATCGACTGCTCGTCGATCACTGCAAT
CGCTATACGGTTGATAATCCCAGCTGGAAAATCAACCGGGAAACGCTGCA
TAAAGTGATGAGCCTCTTCCAAAGGGATCTGGATGCCTTCGATCGAGGCA
TGGGAACAGGTTGA
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