mRNA_M-pyrifera_M_contig105322.1144.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105322.1144.1
Unique NamemRNA_M-pyrifera_M_contig105322.1144.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A4W4GR75_ELEEL (Clustered mitochondria (cluA/CLU1) homolog b n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4GR75_ELEEL)

HSP 1 Score: 57.4 bits (137), Expect = 2.000e-7
Identity = 32/103 (31.07%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 EFSVEACLDTDLRRLFPHLEQLEGAGRGPLLVAPSKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNANSSSKTF--HELPSLIASV 303
            E+ +    +  LR L P  + L+      +L   S W+ P  +R+ HGDL YL + T++ + + +TA++ GF++N+STT RFN   ++ +   H L  L++ +
Sbjct:   82 EYILPGAKECLLRPLQPQTKNLKPTECLKVLTT-SNWNPPPGNRKMHGDLMYLNIVTMEDRHFSITASTRGFYLNQSTTYRFNPKPANPSLLSHSLMELLSQI 183          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: UPI0015D0BE66 (clustered mitochondria protein homolog isoform X1 n=3 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D0BE66)

HSP 1 Score: 57.4 bits (137), Expect = 2.120e-7
Identity = 32/103 (31.07%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 EFSVEACLDTDLRRLFPHLEQLEGAGRGPLLVAPSKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNANSSSKTF--HELPSLIASV 303
            E+ +    +  LR L P  + L+      +L   S W+ P  +R+ HGDL YL + T++ + + +TA++ GF++N+STT RFN   ++ +   H L  L++ +
Sbjct:  693 EYILPGAKECLLRPLQPQTKNLKPTECLKVLTT-SNWNPPPGNRKMHGDLMYLNIVTMEDRHFSITASTRGFYLNQSTTYRFNPKPANPSLLSHSLMELLSQI 794          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A6J2VBN9_CHACN (clustered mitochondria protein homolog isoform X1 n=2 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VBN9_CHACN)

HSP 1 Score: 57.0 bits (136), Expect = 2.880e-7
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   88 LLVAPSKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNANS--SSKTFHELPSLIASV 303
            L ++ S W+ P  SR+  GD  Y+ V+TL+GQ Y++T+ + GFF+N+ST E F+     SS+  H L  L++ +
Sbjct:  212 LDLSLSNWNPPPGSRKLQGDFLYISVRTLEGQHYEITSCTRGFFLNRSTMEMFDPRPAPSSQLCHCLTDLLSQI 285          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: I2JYB9_DEKBR (Putative translation initiation factor subunit n=4 Tax=Dekkera bruxellensis TaxID=5007 RepID=I2JYB9_DEKBR)

HSP 1 Score: 53.5 bits (127), Expect = 4.750e-6
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   22 LDTDLRRLFP-HLEQLEGAGRGPLLVAP-------SKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNAN 255
            +D +L ++   H +  E A    L + P       S W   + SR+  GDL YL  +TL+G+ Y +TA   GFFVNKS+  RF+ +
Sbjct:  195 IDQELEKVLNVHXDASEFAASSSLKLKPALXTLSVSAWTPAAQSRQLQGDLFYLLCQTLEGETYHITANVKGFFVNKSSANRFDGH 280          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A1R1XY63_9FUNG (Clustered mitochondria protein-like protein n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XY63_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 4.760e-6
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  103 SKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNANSS--SKTFHELPSLI 294
            S W+   P R   GDL YL++ TL+GQ Y VT++  GFFVN ST+ +F+ + +  ++  H L SL+
Sbjct:  285 SGWNPVRPDRYQKGDLFYLQITTLEGQIYHVTSSINGFFVNNSTSSKFDPSRADPARESHSLISLV 350          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A1Z5TJD2_HORWE (Clustered mitochondria protein homolog n=15 Tax=Hortaea werneckii TaxID=91943 RepID=A0A1Z5TJD2_HORWE)

HSP 1 Score: 51.6 bits (122), Expect = 2.250e-5
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   67 EGAGRGPLLVAPSKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNAN--SSSKTFH 276
            E A +    ++ S W+ P  S    G L YL+V TL+G+ + +TA  +GF+VNKST  +F+ +  +S K FH
Sbjct:  214 EAAPKTVKAISLSAWNPPPYSLRMRGHLLYLQVTTLEGEQHYITAHVSGFYVNKSTNNKFDPSPRTSPKAFH 285          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A1E4RF45_9ASCO (Clustered mitochondria protein homolog n=1 Tax=Hyphopichia burtonii NRRL Y-1933 TaxID=984485 RepID=A0A1E4RF45_9ASCO)

HSP 1 Score: 51.2 bits (121), Expect = 3.080e-5
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  103 SKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFN 249
            S+W    P+++  GDL YL ++TL+G+   +T   +GFFVN+S+T RFN
Sbjct:  233 SQWSPVPPAQKTKGDLLYLTLQTLEGEIIHITCHLSGFFVNRSSTARFN 281          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A3M6VYG4_HORWE (Clu domain-containing protein (Fragment) n=1 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M6VYG4_HORWE)

HSP 1 Score: 50.4 bits (119), Expect = 5.510e-5
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   67 EGAGRGPLLVAPSKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNAN--SSSKTFH 276
            E A +    ++ S W+ P  +    G L YL+V TL+G+ + +TA  +GF+VNKST  +F+ +  +S K FH
Sbjct:  203 EAAPKTVKAISLSAWNPPPYNLRMRGHLLYLQVTTLEGEQHYITAHVSGFYVNKSTNNKFDPSPRTSPKAFH 274          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A6A6B6B7_9PEZI (Clustered mitochondria protein homolog n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6B6B7_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 7.840e-5
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   94 VAPSKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFN 249
            ++ S W+ P     A G L YL+V T +G+ YQ+T+  +GFFVNKST ++F+
Sbjct:  213 ISLSPWNPPPYHLRAKGHLLYLQVTTNEGEQYQITSHVSGFFVNKSTNQKFD 264          
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Match: A0A6A6Q4H6_9PEZI (Clustered mitochondria protein homolog n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6Q4H6_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 7.850e-5
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  103 SKWDQPSPSREAHGDLAYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNAN----SSSKTFHELPSLIASV 303
            S W+ P       G L YL+V TL+G+ + +T++  GF+VNKST  RF+A+    + S + H L +L++ +
Sbjct:  224 SSWNPPPYHLRMRGHLLYLQVTTLEGEQHYITSSVCGFYVNKSTNNRFDASPRNGAKSSSTHSLMALLSQI 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105322.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A4W4GR75_ELEEL2.000e-731.07Clustered mitochondria (cluA/CLU1) homolog b n=1 T... [more]
UPI0015D0BE662.120e-731.07clustered mitochondria protein homolog isoform X1 ... [more]
A0A6J2VBN9_CHACN2.880e-739.19clustered mitochondria protein homolog isoform X1 ... [more]
I2JYB9_DEKBR4.750e-636.05Putative translation initiation factor subunit n=4... [more]
A0A1R1XY63_9FUNG4.760e-642.42Clustered mitochondria protein-like protein n=2 Ta... [more]
A0A1Z5TJD2_HORWE2.250e-538.89Clustered mitochondria protein homolog n=15 Tax=Ho... [more]
A0A1E4RF45_9ASCO3.080e-544.90Clustered mitochondria protein homolog n=1 Tax=Hyp... [more]
A0A3M6VYG4_HORWE5.510e-537.50Clu domain-containing protein (Fragment) n=1 Tax=H... [more]
A0A6A6B6B7_9PEZI7.840e-544.23Clustered mitochondria protein homolog n=1 Tax=Apl... [more]
A0A6A6Q4H6_9PEZI7.850e-536.62Clustered mitochondria protein homolog n=1 Tax=Neo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105322contigM-pyrifera_M_contig105322:244..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.4
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog7994.ENSAMXP00000020619
Preferred nameCLUH
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005794,GO:0005819,GO:0005856,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007405,GO:0008150,GO:0008283,GO:0008356,GO:0009987,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0017145,GO:0019867,GO:0019898,GO:0022008,GO:0030154,GO:0031090,GO:0031312,GO:0031315,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0036445,GO:0043021,GO:0043022,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045165,GO:0048103,GO:0048311,GO:0048312,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051301,GO:0051640,GO:0051641,GO:0051646,GO:0055057,GO:0055059,GO:0061351,GO:0071840,GO:0072089,GO:0072686,GO:0097159,GO:0098588,GO:0098722,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901363
EggNOG free text desc.Clustered mitochondria (cluA CLU1) homolog
EggNOG OGs38HJZ@33154,3BEBG@33208,3CWQM@33213,4859V@7711,48X70@7742,49WM3@7898,KOG1839@1,KOG1839@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000620.1
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.4682937-CDS-M-pyrifera_M_contig105322:243..5461622815561.4682937-CDS-M-pyrifera_M_contig105322:243..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105322 244..546 +
1692277464.570209-CDS-M-pyrifera_M_contig105322:243..5461692277464.570209-CDS-M-pyrifera_M_contig105322:243..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105322 244..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105322.1144.1prot_M-pyrifera_M_contig105322.1144.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105322 244..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105322.1144.1

>prot_M-pyrifera_M_contig105322.1144.1 ID=prot_M-pyrifera_M_contig105322.1144.1|Name=mRNA_M-pyrifera_M_contig105322.1144.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
EFSVEACLDTDLRRLFPHLEQLEGAGRGPLLVAPSKWDQPSPSREAHGDL
AYLKVKTLDGQAYQVTAASTGFFVNKSTTERFNANSSSKTFHELPSLIAS
V
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mRNA from alignment at M-pyrifera_M_contig105322:244..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105322.1144.1 ID=mRNA_M-pyrifera_M_contig105322.1144.1|Name=mRNA_M-pyrifera_M_contig105322.1144.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig105322:244..546+ (Macrocystis pyrifera P11B4 male)
GAGTTCTCGGTCGAGGCCTGCCTCGACACAGACCTCCGCCGCCTCTTCCC ACACCTGGAGCAGCTGGAGGGCGCGGGCAGAGGGCCCCTGCTCGTGGCGC CCTCCAAGTGGGACCAACCGTCGCCCTCCCGCGAGGCGCACGGCGACCTC GCCTACCTGAAGGTGAAGACGCTCGACGGCCAGGCCTACCAGGTCACGGC TGCCTCCACTGGCTTCTTCGTCAACAAGAGCACCACGGAGCGCTTCAACG CCAACTCTTCTTCCAAGACTTTCCACGAGCTGCCCTCGTTGATTGCCTCC GTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105322:244..546+

>mRNA_M-pyrifera_M_contig105322.1144.1 ID=mRNA_M-pyrifera_M_contig105322.1144.1|Name=mRNA_M-pyrifera_M_contig105322.1144.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig105322:244..546+ (Macrocystis pyrifera P11B4 male)
GAGTTCTCGGTCGAGGCCTGCCTCGACACAGACCTCCGCCGCCTCTTCCC
ACACCTGGAGCAGCTGGAGGGCGCGGGCAGAGGGCCCCTGCTCGTGGCGC
CCTCCAAGTGGGACCAACCGTCGCCCTCCCGCGAGGCGCACGGCGACCTC
GCCTACCTGAAGGTGAAGACGCTCGACGGCCAGGCCTACCAGGTCACGGC
TGCCTCCACTGGCTTCTTCGTCAACAAGAGCACCACGGAGCGCTTCAACG
CCAACTCTTCTTCCAAGACTTTCCACGAGCTGCCCTCGTTGATTGCCTCC
GTTGAGTTCTCGGTCGAGGCCTGCCTCGACACAGACCTCCGCCGCCTCTT
CCCACACCTGGAGCAGCTGGAGGGCGCGGGCAGAGGGCCCCTGCTCGTGG
CGCCCTCCAAGTGGGACCAACCGTCGCCCTCCCGCGAGGCGCACGGCGAC
CTCGCCTACCTGAAGGTGAAGACGCTCGACGGCCAGGCCTACCAGGTCAC
GGCTGCCTCCACTGGCTTCTTCGTCAACAAGAGCACCACGGAGCGCTTCA
ACGCCAACTCTTCTTCCAAGACTTTCCACGAGCTGCCCTCGTTGATTGCC
TCCGTT
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