mRNA_M-pyrifera_M_contig105316.1143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105316.1143.1
Unique NamemRNA_M-pyrifera_M_contig105316.1143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105316.1143.1 vs. uniprot
Match: A0A7X9HMR4_9DELT (Lamin tail domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9HMR4_9DELT)

HSP 1 Score: 67.4 bits (163), Expect = 1.190e-10
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:   22 CTTDDDCRVNACHV--------GFCDVYGVCNPI-----FLPDDLPCDDGDACTHSEICHNGECYGLVISXXXXXXXXVDTCDPILGCANVPIDAD-CSD 279
            CTTDD C +  C           FC    VCNP+      L + L C+DGDACT S++C NG C G  ++         D+CDP  GC  +P D + CSD
Sbjct:  715 CTTDDRCNLGVCRGTAVSCDDGNFC-TEDVCNPVSGECQHLNNTLSCNDGDACTVSDVCSNGLCVGQPLTCDDHNLCTDDSCDPASGCLYLPDDTNACSD 813
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BLAST of mRNA_M-pyrifera_M_contig105316.1143.1 vs. uniprot
Match: A0A2E4FAT1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E4FAT1_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 4.130e-8
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:   49 NACHVGFCDVYGVCNP--IFLPDDLPCDDGDACTHSEICHNGECYGLVISXXXXXXXXVD-TCDPILGCANVPIDADCSD 279
            N C +  CD  G      I L D  PCDDGDACT SE+C  G C G   +        V+ +C+P +GC  VPI+  C+D
Sbjct:  170 NTCRL--CDAQGSGGSDWIVLVDGAPCDDGDACTQSEVCELGACIGKYPTICPPMGTCVEASCEPGVGCVGVPIEGPCND 247
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BLAST of mRNA_M-pyrifera_M_contig105316.1143.1 vs. uniprot
Match: A0A7X9DXG4_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9DXG4_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 2.060e-7
Identity = 35/102 (34.31%), Postives = 45/102 (44.12%), Query Frame = 1 
Query:   10 GSGFCTTDDDCRVNACH---------VGFCDVYGVCNPIF-------LPDDLPCDDGDACTHSEICHNGECYGL--VISXXXXXXXXVDTCDPILGCANVPI 261
            G+G CT +D CR   C          +  C V GVC+P           D++PCDDG ACT S+ C  G C G   V+           TCDP  G  + P+
Sbjct: 1316 GNG-CTRNDICRSGVCRGYAPVQCTALDACHVAGVCDPATGECSNPPAEDNIPCDDGSACTRSDTCQQGVCTGADPVVCEALDQCHPAGTCDPATGVCSQPV 1416
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BLAST of mRNA_M-pyrifera_M_contig105316.1143.1 vs. uniprot
Match: A0A7C4WXS7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4WXS7_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 1.840e-6
Identity = 33/108 (30.56%), Postives = 48/108 (44.44%), Query Frame = 1 
Query:    1 PTVGSGFCTTDDDCR--------------VNACH-VGFCD-VYGVCNPIFLPDDLPCDDGDACTHSEICHNGECYGL--VISXXXXXXXXVDTCDPILGCANVPIDAD 270
            P      CT  D C+              ++ CH  G C+   GVCN    P+ + C+DG+ACT S+ C +GEC+G   V+            CDP+ G  + P+  D
Sbjct:  763 PCDDRNLCTRADSCQRGRCIGSDPVVCAALDQCHDPGTCNPATGVCNDPARPNGVGCNDGNACTRSDTCQSGECFGSNPVVCTPLDQCHSAGVCDPVTGVCSQPVKPD 870
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BLAST of mRNA_M-pyrifera_M_contig105316.1143.1 vs. uniprot
Match: A0A2G6MY34_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2G6MY34_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 9.520e-5
Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 1 
Query:   34 DDCRVNACHVGFCDVYGVCNPIFLPDDLPCDDGDACTHSEICHNGECYG 180
            D+C VN C      V G C P+      PCDDGDACT +++C  G+C G
Sbjct:   50 DECLVNVCQ----QVTGTCAPVATNHGGPCDDGDACTATDVCRAGQCVG 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105316.1143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7X9HMR4_9DELT1.190e-1039.00Lamin tail domain-containing protein n=1 Tax=Myxoc... [more]
A0A2E4FAT1_9DELT4.130e-841.25Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7X9DXG4_9DELT2.060e-734.31Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7C4WXS7_9DELT1.840e-630.56Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2G6MY34_9DELT9.520e-544.90Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105316contigM-pyrifera_M_contig105316:118..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.4272497-CDS-M-pyrifera_M_contig105316:117..4711622815561.4272497-CDS-M-pyrifera_M_contig105316:117..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105316 118..471 -
1692277464.5602252-CDS-M-pyrifera_M_contig105316:117..4711692277464.5602252-CDS-M-pyrifera_M_contig105316:117..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105316 118..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105316.1143.1prot_M-pyrifera_M_contig105316.1143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105316 118..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105316.1143.1

>prot_M-pyrifera_M_contig105316.1143.1 ID=prot_M-pyrifera_M_contig105316.1143.1|Name=mRNA_M-pyrifera_M_contig105316.1143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
PTVGSGFCTTDDDCRVNACHVGFCDVYGVCNPIFLPDDLPCDDGDACTHS
EICHNGECYGLVISCDDGNACTVDTCDPILGCANVPIDADCSDFTEGPDP
RASARPTPLTYLDAAPPL
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mRNA from alignment at M-pyrifera_M_contig105316:118..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105316.1143.1 ID=mRNA_M-pyrifera_M_contig105316.1143.1|Name=mRNA_M-pyrifera_M_contig105316.1143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig105316:118..471- (Macrocystis pyrifera P11B4 male)
CCCACCGTGGGCAGTGGCTTCTGCACCACAGATGACGACTGCAGAGTGAA
CGCCTGCCACGTTGGCTTCTGCGATGTCTACGGTGTGTGCAATCCCATTT
TCCTTCCCGACGATCTCCCCTGCGACGATGGTGATGCCTGCACACACTCA
GAGATCTGTCACAACGGAGAGTGCTACGGCCTCGTCATCAGCTGCGACGA
CGGAAACGCCTGCACAGTGGACACCTGTGACCCCATTCTTGGCTGTGCCA
ACGTCCCCATCGATGCCGATTGCTCAGACTTCACAGAGGGCCCAGACCCG
CGTGCATCTGCACGACCGACTCCACTCACTTACTTGGACGCCGCGCCACC
ACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105316:118..471-

>mRNA_M-pyrifera_M_contig105316.1143.1 ID=mRNA_M-pyrifera_M_contig105316.1143.1|Name=mRNA_M-pyrifera_M_contig105316.1143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig105316:118..471- (Macrocystis pyrifera P11B4 male)
CCCACCGTGGGCAGTGGCTTCTGCACCACAGATGACGACTGCAGAGTGAA
CGCCTGCCACGTTGGCTTCTGCGATGTCTACGGTGTGTGCAATCCCATTT
TCCTTCCCGACGATCTCCCCTGCGACGATGGTGATGCCTGCACACACTCA
GAGATCTGTCACAACGGAGAGTGCTACGGCCTCGTCATCAGCTGCGACGA
CGGAAACGCCTGCACAGTGGACACCTGTGACCCCATTCTTGGCTGTGCCA
ACGTCCCCATCGATGCCGATTGCTCAGACTTCACAGAGGGCCCAGACCCG
CGTGCATCTGCACGACCGACTCCACTCACTTACTTGGACGCCGCGCCACC
ACTCCCCACCGTGGGCAGTGGCTTCTGCACCACAGATGACGACTGCAGAG
TGAACGCCTGCCACGTTGGCTTCTGCGATGTCTACGGTGTGTGCAATCCC
ATTTTCCTTCCCGACGATCTCCCCTGCGACGATGGTGATGCCTGCACACA
CTCAGAGATCTGTCACAACGGAGAGTGCTACGGCCTCGTCATCAGCTGCG
ACGACGGAAACGCCTGCACAGTGGACACCTGTGACCCCATTCTTGGCTGT
GCCAACGTCCCCATCGATGCCGATTGCTCAGACTTCACAGAGGGCCCAGA
CCCGCGTGCATCTGCACGACCGACTCCACTCACTTACTTGGACGCCGCGC
CACCACTC
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