mRNA_M-pyrifera_M_contig105315.1142.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105315.1142.1
Unique NamemRNA_M-pyrifera_M_contig105315.1142.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A2R5GKZ0_9STRA (Guanine nucleotide-binding protein subunit beta-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKZ0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.690e-44
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSP-DGNTFV 360
            W+A TTNK  +IPLRS+WVMTCA+E+ + R VACGGLDN+CS+Y LS   AL+  S EL  HDGYLSC RF D   ++TSSGD TCILWD E     RQF DH  DVMSVS SP D N FV
Sbjct:   81 WNANTTNKVQAIPLRSSWVMTCAFEQTENRMVACGGLDNLCSIYQLSNDTALNRASCELAAHDGYLSCCRFLDTRSVITSSGDSTCILWDVESTSVKRQFTDHGGDVMSVSPSPTDPNLFV 201
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BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A0G4ILG1_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4ILG1_PLABS)

HSP 1 Score: 159 bits (401), Expect = 3.590e-44
Identity = 75/122 (61.48%), Postives = 92/122 (75.41%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLS-RPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSV-SPDGNTFV 360
            W+AF+TNK H+IPLRS+WVMTCAY   QG FVACGGLDN+CS+Y LS + E       EL QH+GYLSC RF +E  ++TSSGD TCILWD E+++P   F DH+ DVMSVS+  P+G TFV
Sbjct:   88 WNAFSTNKVHAIPLRSSWVMTCAYS-PQGTFVACGGLDNLCSVYKLSNKAEGQQRTHCELAQHEGYLSCCRFINEGEIITSSGDSTCILWDIEQKQPKNTFSDHAGDVMSVSIFGPEGKTFV 208
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BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A852KQM2_UROIN (GBB4 protein (Fragment) n=1 Tax=Urocolius indicus TaxID=458196 RepID=A0A852KQM2_UROIN)

HSP 1 Score: 149 bits (375), Expect = 6.020e-43
Identity = 70/120 (58.33%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSPDGNTFV 360
            WD++TTNK H+IPLRS+WVMTCAY    G +VACGGLDN+CS+Y+L   E     S EL  H GYLSC RF D++ +VTSSGD TC LWD E  +    F  H+ DVMS+S+SPD  TFV
Sbjct:    7 WDSYTTNKMHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTPFTGHTGDVMSLSLSPDMRTFV 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A6U5JG09_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5JG09_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.130e-42
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSP 342
            WDA++TNK + IPLRS+WVMTCAYE+  G  VACGGLDN+CS+Y+LS+P+ +   + EL  HDGY+SC RF DE H++TSSGDGTCI WD E    L  F DH++DVM +S+ P
Sbjct:   89 WDAWSTNKINLIPLRSSWVMTCAYEQTYGNLVACGGLDNLCSIYNLSQPQTMR-ATKELAAHDGYVSCCRFIDESHIITSSGDGTCIQWDVETGDVLTTFSDHTSDVMGLSIHP 201
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BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: B8CBT0_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBT0_THAPS)

HSP 1 Score: 154 bits (390), Expect = 1.150e-42
Identity = 69/118 (58.47%), Postives = 87/118 (73.73%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDD-PSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSPDGN 351
            W+AFTTNK  +IPLRS+WVMTCA+E+ +G  +ACGGLDNVCS+Y+  +    +   S EL  HDGYLSC RF DE H+VTSSGD TCI WD    + L+ F DH +DVMSV++SP+ N
Sbjct:   73 WNAFTTNKVQAIPLRSSWVMTCAFEQSKGNLIACGGLDNVCSIYNTQQASTSNARASKELVAHDGYLSCCRFVDEGHVVTSSGDSTCIYWDVNSGEVLKTFSDHKSDVMSVAISPENN 190
[Close]
BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A7K7PR89_ACRAR (GBB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K7PR89_ACRAR)

HSP 1 Score: 148 bits (373), Expect = 1.210e-42
Identity = 70/120 (58.33%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSPDGNTFV 360
            WD++TTNK H+IPLRS+WVMTCAY    G +VACGGLDN+CS+Y+L   E     S EL  H GYLSC RF D+  +VTSSGD TC LWD E  +    F  H+ DVMS+S+SPD  TFV
Sbjct:    7 WDSYTTNKMHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDKQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLSPDMRTFV 125
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BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A401Q5Y1_SCYTO (Uncharacterized protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401Q5Y1_SCYTO)

HSP 1 Score: 149 bits (377), Expect = 1.260e-42
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSPDGNTFV 360
            WD++TTNK H+IPLRS+WVMTCAY    G +VACGGLDN+CS+Y L   E     S EL  H GYLSC RF D++ +VTSSGD TC LWD E  +    F  HS DVMS+S+SPD  TFV
Sbjct:   21 WDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDFKTFV 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A7S2S998_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S998_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.420e-42
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSP-DGNTFV 360
            W+  TTNK  +IPLRS+WVMTCA+E+ Q + VACGGLDN+CS+Y LS   AL+  + EL  HDGYLSC RF D   ++TSSGD TCILW+  + + +R F DHS DVMSVS SP D N FV
Sbjct:  181 WNGNTTNKIQAIPLRSSWVMTCAFEQTQNKMVACGGLDNMCSIYTLSTDTALNRATCELAAHDGYLSCCRFLDPSRIITSSGDSTCILWNLNQNQVVRHFTDHSGDVMSVSPSPTDQNIFV 301
[Close]
BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A7S2HG74_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HG74_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.340e-42
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSP-DGNTFV 360
            W+AF+TNK H+IPLRS+WVMTCA+E+K+G  VACGGLDN+CS+Y+L++         EL  HDGYLSC RF DE  ++TSSGD TCI WD    + L+ F DH  DVMS++V+P D N FV
Sbjct:   90 WNAFSTNKLHAIPLRSSWVMTCAFEQKKGNLVACGGLDNLCSVYNLNQQPQQTKAMKELAAHDGYLSCCRFLDEGRILTSSGDSTCIHWDINSGEVLKTFSDHKGDVMSLAVNPSDSNIFV 210
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BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Match: A0A6P4TXF2_PANPR (guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 isoform X3 n=1 Tax=Panthera pardus TaxID=9691 RepID=A0A6P4TXF2_PANPR)

HSP 1 Score: 151 bits (382), Expect = 4.190e-42
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:    1 WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPEALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQFKDHSADVMSVSVSPDGNTFV 360
            WD++TTNK H+IPLRS+WVMTCAY    G FVACGGLDN+CS+Y L   E     S EL  H GYLSC RF D++ ++TSSGD TC LWD E  +    F  HS DVMS+S++PDG TFV
Sbjct:   82 WDSYTTNKVHAIPLRSSWVMTCAYA-PSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFV 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105315.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GKZ0_9STRA1.690e-4462.81Guanine nucleotide-binding protein subunit beta-1 ... [more]
A0A0G4ILG1_PLABS3.590e-4461.48Uncharacterized protein n=2 Tax=Plasmodiophoridae ... [more]
A0A852KQM2_UROIN6.020e-4358.33GBB4 protein (Fragment) n=1 Tax=Urocolius indicus ... [more]
A0A6U5JG09_9STRA1.130e-4259.65Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8CBT0_THAPS1.150e-4258.47Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7K7PR89_ACRAR1.210e-4258.33GBB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8... [more]
A0A401Q5Y1_SCYTO1.260e-4259.17Uncharacterized protein (Fragment) n=1 Tax=Scylior... [more]
A0A7S2S998_9STRA1.420e-4259.50Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S2HG74_9STRA2.340e-4257.85Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6P4TXF2_PANPR4.190e-4259.17guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105315contigM-pyrifera_M_contig105315:5..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue6.7e-35
Seed eggNOG ortholog35128.Thaps37124
Preferred nameGNB1
KEGG koko:K04536,ko:K04537,ko:K04538,ko:K07825
KEGG Pathwayko04011,ko04014,ko04062,ko04151,ko04371,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04744,ko04926,ko05032,ko05034,ko05167,ko05200,map04011,map04014,map04062,map04151,map04371,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04744,map04926,map05032,map05034,map05167,map05200
Hectar predicted targeting categoryother localisation
GOsGO:0000132,GO:0000187,GO:0000226,GO:0000278,GO:0000749,GO:0000750,GO:0001101,GO:0001403,GO:0001654,GO:0001666,GO:0001667,GO:0001750,GO:0001775,GO:0001917,GO:0001932,GO:0001934,GO:0002009,GO:0002682,GO:0002684,GO:0002685,GO:0002687,GO:0003007,GO:0003008,GO:0003013,GO:0003365,GO:0003371,GO:0003379,GO:0003380,GO:0003674,GO:0003824,GO:0003924,GO:0005246,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005834,GO:0005886,GO:0005929,GO:0005937,GO:0006109,GO:0006457,GO:0006873,GO:0006874,GO:0006875,GO:0006884,GO:0006915,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007166,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0007191,GO:0007200,GO:0007204,GO:0007212,GO:0007213,GO:0007223,GO:0007264,GO:0007265,GO:0007267,GO:0007275,GO:0007369,GO:0007398,GO:0007399,GO:0007405,GO:0007423,GO:0007498,GO:0007507,GO:0007584,GO:0007596,GO:0007599,GO:0007600,GO:0007602,GO:0007603,GO:0007606,GO:0008015,GO:0008081,GO:0008092,GO:0008104,GO:0008150,GO:0008217,GO:0008219,GO:0008283,GO:0008356,GO:0008361,GO:0009267,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009606,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009893,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010470,GO:0010525,GO:0010528,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010657,GO:0010658,GO:0010659,GO:0010675,GO:0010817,GO:0010906,GO:0012501,GO:0014070,GO:0016020,GO:0016043,GO:0016055,GO:0016056,GO:0016247,GO:0016462,GO:0016477,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0017145,GO:0019216,GO:0019218,GO:0019220,GO:0019222,GO:0019236,GO:0019725,GO:0019897,GO:0019898,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0022008,GO:0022402,GO:0022603,GO:0022607,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0030003,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030168,GO:0030334,GO:0030335,GO:0030425,GO:0030447,GO:0030507,GO:0030587,GO:0030865,GO:0030866,GO:0030952,GO:0031090,GO:0031136,GO:0031137,GO:0031139,GO:0031152,GO:0031234,GO:0031253,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031682,GO:0031982,GO:0032005,GO:0032147,GO:0032268,GO:0032270,GO:0032350,GO:0032501,GO:0032502,GO:0032535,GO:0032870,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033273,GO:0033554,GO:0033674,GO:0033993,GO:0034694,GO:0034695,GO:0035556,GO:0035567,GO:0035690,GO:0036267,GO:0036293,GO:0036294,GO:0036445,GO:0036477,GO:0040001,GO:0040007,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0042060,GO:0042074,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042493,GO:0042578,GO:0042592,GO:0042594,GO:0042622,GO:0042995,GO:0043005,GO:0043010,GO:0043085,GO:0043087,GO:0043209,GO:0043226,GO:0043227,GO:0043326,GO:0043327,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043519,GO:0043547,GO:0043549,GO:0043577,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044093,GO:0044182,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044441,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0044764,GO:0044877,GO:0045165,GO:0045176,GO:0045595,GO:0045598,GO:0045859,GO:0045860,GO:0045937,GO:0045995,GO:0046578,GO:0046662,GO:0046999,GO:0047391,GO:0048103,GO:0048383,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0048880,GO:0048881,GO:0048882,GO:0048883,GO:0048915,GO:0048916,GO:0048920,GO:0048925,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050801,GO:0050817,GO:0050877,GO:0050878,GO:0050896,GO:0050909,GO:0051020,GO:0051056,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051259,GO:0051270,GO:0051272,GO:0051291,GO:0051293,GO:0051294,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051480,GO:0051493,GO:0051593,GO:0051606,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0055057,GO:0055059,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060026,GO:0060027,GO:0060041,GO:0060170,GO:0060255,GO:0060359,GO:0060429,GO:0061343,GO:0061351,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070206,GO:0070208,GO:0070482,GO:0070542,GO:0070783,GO:0070887,GO:0071214,GO:0071229,GO:0071242,GO:0071310,GO:0071379,GO:0071380,GO:0071396,GO:0071398,GO:0071407,GO:0071417,GO:0071444,GO:0071453,GO:0071456,GO:0071478,GO:0071482,GO:0071495,GO:0071496,GO:0071840,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072359,GO:0072503,GO:0072507,GO:0080090,GO:0090066,GO:0090181,GO:0090207,GO:0090702,GO:0095500,GO:0097305,GO:0097306,GO:0097381,GO:0097447,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098722,GO:0098743,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0099106,GO:0099120,GO:0104004,GO:0120025,GO:0120038,GO:0198738,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902533,GO:1902610,GO:1902622,GO:1902624,GO:1902850,GO:1903047,GO:1903664,GO:1903665,GO:1903725,GO:1903831,GO:1905114,GO:1905144,GO:1905145,GO:1905360,GO:2000026,GO:2000145,GO:2000147,GO:2000241,GO:2000243
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs2XA68@2836,KOG0286@1,KOG0286@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04147
Exons2
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.3796172-CDS-M-pyrifera_M_contig105315:4..5411622815561.3796172-CDS-M-pyrifera_M_contig105315:4..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105315 5..541 -
1692277464.5392532-CDS-M-pyrifera_M_contig105315:4..5411692277464.5392532-CDS-M-pyrifera_M_contig105315:4..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105315 5..541 -
1622815561.3899844-CDS-M-pyrifera_M_contig105315:606..6361622815561.3899844-CDS-M-pyrifera_M_contig105315:606..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105315 607..636 -
1692277464.5508387-CDS-M-pyrifera_M_contig105315:606..6361692277464.5508387-CDS-M-pyrifera_M_contig105315:606..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105315 607..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105315.1142.1prot_M-pyrifera_M_contig105315.1142.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105315 5..636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105315.1142.1

>prot_M-pyrifera_M_contig105315.1142.1 ID=prot_M-pyrifera_M_contig105315.1142.1|Name=mRNA_M-pyrifera_M_contig105315.1142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
WDAFTTNKDHSIPLRSAWVMTCAYERKQGRFVACGGLDNVCSLYDLSRPE
ALDDPSVELRQHDGYLSCARFCDEHHLVTSSGDGTCILWDAEEQKPLRQF
KDHSADVMSVSVSPDGNTFVSGSCDTTAKLWDVREERCVRTFVGHSTDIN
SVAIFPDGNSFATGSDDSTCRMFDIRACGEVARFASDSM
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mRNA from alignment at M-pyrifera_M_contig105315:5..636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105315.1142.1 ID=mRNA_M-pyrifera_M_contig105315.1142.1|Name=mRNA_M-pyrifera_M_contig105315.1142.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=632bp|location=Sequence derived from alignment at M-pyrifera_M_contig105315:5..636- (Macrocystis pyrifera P11B4 male)
TGGGATGCGTTCACCACCAACAAAGATCACGTGAGACACGCGCCCACACC
CCTTCTCCACACACACACCCCGCTCACCCACCTCTCTCCTCGCAGTCCAT
CCCGCTTCGCTCCGCCTGGGTCATGACCTGCGCCTACGAGCGCAAGCAGG
GCCGCTTCGTCGCTTGCGGCGGCCTCGACAACGTCTGCTCACTCTACGAC
CTCTCTCGCCCGGAAGCGCTGGACGACCCCTCCGTGGAGCTGCGCCAGCA
CGACGGCTACCTCTCCTGCGCGCGCTTCTGCGACGAGCACCACCTCGTCA
CCAGCAGCGGCGACGGCACCTGCATCCTGTGGGACGCAGAGGAGCAGAAG
CCGCTCCGTCAGTTCAAGGATCACAGCGCCGACGTGATGAGCGTCTCCGT
GTCGCCCGACGGCAACACCTTTGTCAGCGGCAGCTGCGACACCACCGCCA
AGCTGTGGGACGTGCGCGAGGAGCGCTGCGTCCGCACGTTCGTCGGACAC
TCCACCGACATCAACTCCGTCGCCATCTTCCCCGACGGAAACTCCTTCGC
CACCGGCAGCGACGACAGCACCTGCCGCATGTTCGACATCCGCGCGTGCG
GCGAGGTGGCGCGCTTCGCCTCCGACTCCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105315:5..636-

>mRNA_M-pyrifera_M_contig105315.1142.1 ID=mRNA_M-pyrifera_M_contig105315.1142.1|Name=mRNA_M-pyrifera_M_contig105315.1142.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig105315:5..636- (Macrocystis pyrifera P11B4 male)
TGGGATGCGTTCACCACCAACAAAGATCACTGGGATGCGTTCACCACCAA
CAAAGATCACTCCATCCCGCTTCGCTCCGCCTGGGTCATGACCTGCGCCT
ACGAGCGCAAGCAGGGCCGCTTCGTCGCTTGCGGCGGCCTCGACAACGTC
TGCTCACTCTACGACCTCTCTCGCCCGGAAGCGCTGGACGACCCCTCCGT
GGAGCTGCGCCAGCACGACGGCTACCTCTCCTGCGCGCGCTTCTGCGACG
AGCACCACCTCGTCACCAGCAGCGGCGACGGCACCTGCATCCTGTGGGAC
GCAGAGGAGCAGAAGCCGCTCCGTCAGTTCAAGGATCACAGCGCCGACGT
GATGAGCGTCTCCGTGTCGCCCGACGGCAACACCTTTGTCAGCGGCAGCT
GCGACACCACCGCCAAGCTGTGGGACGTGCGCGAGGAGCGCTGCGTCCGC
ACGTTCGTCGGACACTCCACCGACATCAACTCCGTCGCCATCTTCCCCGA
CGGAAACTCCTTCGCCACCGGCAGCGACGACAGCACCTGCCGCATGTTCG
ACATCCGCGCGTGCGGCGAGGTGGCGCGCTTCGCCTCCGACTCCATGTCC
ATCCCGCTTCGCTCCGCCTGGGTCATGACCTGCGCCTACGAGCGCAAGCA
GGGCCGCTTCGTCGCTTGCGGCGGCCTCGACAACGTCTGCTCACTCTACG
ACCTCTCTCGCCCGGAAGCGCTGGACGACCCCTCCGTGGAGCTGCGCCAG
CACGACGGCTACCTCTCCTGCGCGCGCTTCTGCGACGAGCACCACCTCGT
CACCAGCAGCGGCGACGGCACCTGCATCCTGTGGGACGCAGAGGAGCAGA
AGCCGCTCCGTCAGTTCAAGGATCACAGCGCCGACGTGATGAGCGTCTCC
GTGTCGCCCGACGGCAACACCTTTGTCAGCGGCAGCTGCGACACCACCGC
CAAGCTGTGGGACGTGCGCGAGGAGCGCTGCGTCCGCACGTTCGTCGGAC
ACTCCACCGACATCAACTCCGTCGCCATCTTCCCCGACGGAAACTCCTTC
GCCACCGGCAGCGACGACAGCACCTGCCGCATGTTCGACATCCGCGCGTG
CGGCGAGGTGGCGCGCTTCGCCTCCGACTCCATG
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