mRNA_M-pyrifera_M_contig105309.1140.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105309.1140.1
Unique NamemRNA_M-pyrifera_M_contig105309.1140.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105309.1140.1 vs. uniprot
Match: L8H6P2_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6P2_ACACA)

HSP 1 Score: 84.0 bits (206), Expect = 7.830e-16
Identity = 54/169 (31.95%), Postives = 85/169 (50.30%), Query Frame = 1 
Query:    4 GVAFDMAGPIEAFKSIVCQRSAALQRQSGVKEMGAEEVSAYVVKLYLKRFVPFLHSLGIR-----------PKPDSPWEWCWHADMPKEFLEEVYLPAFRNLTGNGEISCTSLLLTLFPSLQMQDGSRSSMRLPLICDAVELLVEEHGLRNAEVDDLVQALDDLLEEQQ 477
            G  +   G +EAF  +V +R++  +    + +    ++++ + KLY KRFVPFLH LGI               D  + W W   MP  F+E+VY+   RN+T +G +SC   +L L P + +   SR    L      +E +++  G  + EV  LV  LD+LL E+Q
Sbjct:  455 GSVWQFEGVMEAFVELVERRNSDYKM---IDQPSRADIASDLCKLYRKRFVPFLHMLGIEVAGTSSESTSSTHSDQLFRWRWRQGMPSRFIEQVYVTCMRNITCDGTLSCGRHILDLLPEIFLLADSR----LEAAATRLEEVLKHKGKFDEEVSSLVAMLDELLAEKQ 616
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BLAST of mRNA_M-pyrifera_M_contig105309.1140.1 vs. uniprot
Match: F0ZUC2_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZUC2_DICPU)

HSP 1 Score: 55.8 bits (133), Expect = 4.250e-6
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 1 
Query:  133 KLYLKRFVPFLHSLGIRPKPDSPWEWCWHA--------------DMPKEFLEEVYLPAFRNLTGNGEISCTSLLLTLFP---SLQMQDGSRSSMRLPLICDAVELLVEEHGLRNAEVDDLVQALDDLLEEQQ 477
            K Y K++  F++ L I+      + W W A              +  +EF++++ +P F+NLT NG +S +     LFP    L+      S   L L     +  +E+ G+ N EV+ +V+ LD LLEE+Q
Sbjct:  594 KFYNKKYKSFINDLCIKTSDQDGYSWSWSALSTANETNNGNEEFERLQEFIKQINIPQFKNLTQNGLVSHSHTFYYLFPFFADLKPPTHPISDYYLGL-----KRRLEKQGIFNKEVEKIVETLDRLLEERQ 720
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105309.1140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L8H6P2_ACACA7.830e-1631.95Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
F0ZUC2_DICPU4.250e-629.55Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105309contigM-pyrifera_M_contig105309:4..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.29971-CDS-M-pyrifera_M_contig105309:3..4801622815561.29971-CDS-M-pyrifera_M_contig105309:3..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105309 4..480 -
1692277464.5167408-CDS-M-pyrifera_M_contig105309:3..4801692277464.5167408-CDS-M-pyrifera_M_contig105309:3..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105309 4..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105309.1140.1prot_M-pyrifera_M_contig105309.1140.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105309 4..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105309.1140.1

>prot_M-pyrifera_M_contig105309.1140.1 ID=prot_M-pyrifera_M_contig105309.1140.1|Name=mRNA_M-pyrifera_M_contig105309.1140.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MGVAFDMAGPIEAFKSIVCQRSAALQRQSGVKEMGAEEVSAYVVKLYLKR
FVPFLHSLGIRPKPDSPWEWCWHADMPKEFLEEVYLPAFRNLTGNGEISC
TSLLLTLFPSLQMQDGSRSSMRLPLICDAVELLVEEHGLRNAEVDDLVQA
LDDLLEEQQ
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mRNA from alignment at M-pyrifera_M_contig105309:4..480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105309.1140.1 ID=mRNA_M-pyrifera_M_contig105309.1140.1|Name=mRNA_M-pyrifera_M_contig105309.1140.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig105309:4..480- (Macrocystis pyrifera P11B4 male)
ATGGGAGTTGCCTTCGACATGGCTGGGCCCATCGAGGCATTCAAGTCAAT
TGTATGTCAGCGCAGTGCAGCGCTCCAACGGCAGTCGGGCGTCAAGGAGA
TGGGTGCGGAGGAGGTCAGTGCCTATGTGGTGAAGCTCTACCTCAAGAGA
TTCGTACCTTTCCTGCACTCTTTGGGAATCAGGCCTAAGCCTGACTCTCC
GTGGGAATGGTGCTGGCATGCAGACATGCCGAAGGAGTTCCTGGAGGAGG
TCTACCTCCCTGCCTTCAGGAACCTCACTGGCAATGGCGAGATATCCTGC
ACTTCCCTGCTGCTTACCCTCTTTCCCTCTCTGCAGATGCAGGACGGGTC
GAGGAGCAGCATGAGACTGCCACTGATCTGTGATGCAGTGGAGTTGCTGG
TGGAAGAGCATGGCTTGAGGAACGCTGAAGTCGATGACCTGGTTCAGGCC
TTGGACGACCTGCTGGAGGAGCAACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105309:4..480-

>mRNA_M-pyrifera_M_contig105309.1140.1 ID=mRNA_M-pyrifera_M_contig105309.1140.1|Name=mRNA_M-pyrifera_M_contig105309.1140.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig105309:4..480- (Macrocystis pyrifera P11B4 male)
ATGGGAGTTGCCTTCGACATGGCTGGGCCCATCGAGGCATTCAAGTCAAT
TGTATGTCAGCGCAGTGCAGCGCTCCAACGGCAGTCGGGCGTCAAGGAGA
TGGGTGCGGAGGAGGTCAGTGCCTATGTGGTGAAGCTCTACCTCAAGAGA
TTCGTACCTTTCCTGCACTCTTTGGGAATCAGGCCTAAGCCTGACTCTCC
GTGGGAATGGTGCTGGCATGCAGACATGCCGAAGGAGTTCCTGGAGGAGG
TCTACCTCCCTGCCTTCAGGAACCTCACTGGCAATGGCGAGATATCCTGC
ACTTCCCTGCTGCTTACCCTCTTTCCCTCTCTGCAGATGCAGGACGGGTC
GAGGAGCAGCATGAGACTGCCACTGATCTGTGATGCAGTGGAGTTGCTGG
TGGAAGAGCATGGCTTGAGGAACGCTGAAGTCGATGACCTGGTTCAGGCC
TTGGACGACCTGCTGGAGGAGCAACAGATGGGAGTTGCCTTCGACATGGC
TGGGCCCATCGAGGCATTCAAGTCAATTGTATGTCAGCGCAGTGCAGCGC
TCCAACGGCAGTCGGGCGTCAAGGAGATGGGTGCGGAGGAGGTCAGTGCC
TATGTGGTGAAGCTCTACCTCAAGAGATTCGTACCTTTCCTGCACTCTTT
GGGAATCAGGCCTAAGCCTGACTCTCCGTGGGAATGGTGCTGGCATGCAG
ACATGCCGAAGGAGTTCCTGGAGGAGGTCTACCTCCCTGCCTTCAGGAAC
CTCACTGGCAATGGCGAGATATCCTGCACTTCCCTGCTGCTTACCCTCTT
TCCCTCTCTGCAGATGCAGGACGGGTCGAGGAGCAGCATGAGACTGCCAC
TGATCTGTGATGCAGTGGAGTTGCTGGTGGAAGAGCATGGCTTGAGGAAC
GCTGAAGTCGATGACCTGGTTCAGGCCTTGGACGACCTGCTGGAGGAGCA
ACAG
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