mRNA_M-pyrifera_M_contig10530.1134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10530.1134.1
Unique NamemRNA_M-pyrifera_M_contig10530.1134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: D8LCT9_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT9_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 2.230e-60
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVDASLTAL 315
            SHFWMALLEGKKRWLLYPKE+APLL+P+WPEGCHDPVFEAD++ PDA RTPAALLA+G+  +LEAGDLLFVPAGCPHRVENLT TLALSCNYVDATN+D SL AL
Sbjct:  248 SHFWMALLEGKKRWLLYPKEEAPLLYPIWPEGCHDPVFEADLDNPDATRTPAALLAKGFSCVLEAGDLLFVPAGCPHRVENLTGTLALSCNYVDATNIDMSLAAL 352          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: A0A835ZEW7_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.630e-33
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   13 MALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTD--TLALSCNYVDATNVDASLTAL 315
            MALL G+KRW L+P++Q  LL+PVW EG HDP FE D++ PD  + PAA    G++  +EAGDLLFVP+GCPH VEN      +A+SCNYVD++N++ +L AL
Sbjct:    1 MALLAGRKRWTLFPRDQLALLYPVWREGTHDPSFEVDLKLPDYRKHPAAAALTGWQCAMEAGDLLFVPSGCPHEVENEGPGPVVAVSCNYVDSSNLERALEAL 103          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: A0A7S3TLP7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TLP7_EMIHU)

HSP 1 Score: 114 bits (286), Expect = 6.360e-30
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARG--YEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVD 297
            SHFWM L EG+KRW ++P E APLL P +  G HDP+F AD+   DA      LL R   +EG+L AG+ LFVPAG PH V NLT T A+SCNYVD+TN++
Sbjct:   58 SHFWMLLFEGEKRWTIFPPEAAPLLRPSYAHG-HDPLFSADVHD-DAAAEADELLHRAPRWEGVLRAGECLFVPAGAPHAVLNLTHTAAISCNYVDSTNLE 156          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: R1DNG5_EMIHU (JmjC domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNG5_EMIHU)

HSP 1 Score: 115 bits (287), Expect = 9.360e-28
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARG--YEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVD 297
            SHFWM L EG+KRW ++P E APLL P +  G HDP+F AD+   DA      LL R   +EG+L AG+ LFVPAG PH V NLT T A+SCNYVD+TN++
Sbjct:  409 SHFWMLLFEGEKRWTIFPPEAAPLLRPSYAHG-HDPLFSADVHD-DAAAEADELLRRAPRWEGVLRAGECLFVPAGAPHAVLNLTHTAAISCNYVDSTNLE 507          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: A0A485LIU5_9STRA (Aste57867_21686 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIU5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.900e-27
Identity = 60/100 (60.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAV-RTPAALL--ARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATN 291
            S+FWMAL+EG+KRW L   +   LL+P W  G  D VF  D+   DA  R   AL   AR YE ILEAGD+LFVPAG PH VENLTDT ALSCNY+DA+N
Sbjct:  292 SNFWMALMEGRKRWRLIHPDDVHLLYPTWHVGTPDIVFAVDMTQDDASSRHQHALFQYARVYECILEAGDILFVPAGAPHYVENLTDTTALSCNYIDASN 391          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: A0A6J8EX94_MYTCO (JMJD6 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EX94_MYTCO)

HSP 1 Score: 110 bits (276), Expect = 2.600e-26
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVD 297
            S+FWMAL +GKKRW+ +P+   P L+P + E   DPVF  D+  PD  R P   L    E +LE GD+LFVPAGCPHRVENL  ++A+S N+VD +N++
Sbjct:  377 SNFWMALFQGKKRWVFFPQSDVPYLYPEY-EHSLDPVFAVDLSKPDLTRYPLLQLTTPMECVLEPGDVLFVPAGCPHRVENLETSVAISSNFVDQSNLN 474          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: A0A6G0XJY5_9STRA (JmjC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJY5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.680e-26
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATN 291
            S+FWMAL+EG+KRWLL   +   LL+P W  G  D VF  D+  PD    P    AR  E I+EAGD+LFVPAG PH VEN+TDT+A+S NY+D++N
Sbjct:  294 SNFWMALMEGRKRWLLVHPDDVHLLYPHWHPGSPDLVFSVDLARPDHSLFPLHKYARVSECIMEAGDILFVPAGTPHYVENITDTVAVSSNYIDSSN 390          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: K1R795_CRAGI (Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R795_CRAGI)

HSP 1 Score: 110 bits (275), Expect = 4.140e-26
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVDASLTAL 315
            S+FWMA+ +G KRW+ +P+   P L+P +P    DPVFEADI  P+    P   L    E IL  G++LFVPAGCPHRVENLT ++A+S N+VD +N D  L  L
Sbjct:  397 SNFWMAVFQGSKRWVFFPQSDLPYLYPQYPNSM-DPVFEADIRNPNLENQPLLHLTHPSECILSEGEVLFVPAGCPHRVENLTKSVAISANFVDLSNWDNVLEEL 500          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: A0A8B6GCN7_MYTGA (JmjC domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GCN7_MYTGA)

HSP 1 Score: 108 bits (270), Expect = 1.690e-25
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATN 291
            S+FWMAL +GKKRW+ +P+   P L+P + E   DPVF  D+  PD  + P   L    E +LE GD+LFVPAGCPHRVENL  ++A+S N+VD +N
Sbjct:  375 SNFWMALFQGKKRWVFFPQSDVPYLYPEY-EHSLDPVFAVDLSRPDLTQYPLLQLTTPIECVLEPGDVLFVPAGCPHRVENLETSVAISSNFVDQSN 470          
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Match: UPI001B888FE0 (bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like isoform X2 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888FE0)

HSP 1 Score: 106 bits (264), Expect = 2.640e-25
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 SHFWMALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAALLARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVD 297
            S+FWMAL +G+K+W+LYP E+  LL+P   +   DP FE D+  PD  R P   L    + IL+ GDLLFVPAGCPH + NL  ++A+S N+VD++N D
Sbjct:  199 SNFWMALFQGRKKWILYPAEEQCLLYPQLLQSM-DPTFEVDVTKPDLDRFPLLSLTHPVQCILQPGDLLFVPAGCPHHITNLETSVAISANFVDSSNFD 296          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10530.1134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCT9_ECTSI2.230e-6084.76JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZEW7_9STRA8.630e-3355.34JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3TLP7_EMIHU6.360e-3056.44Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1DNG5_EMIHU9.360e-2856.44JmjC domain-containing protein n=2 Tax=Emiliania h... [more]
A0A485LIU5_9STRA3.900e-2760.00Aste57867_21686 protein n=1 Tax=Aphanomyces stella... [more]
A0A6J8EX94_MYTCO2.600e-2651.52JMJD6 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
A0A6G0XJY5_9STRA2.680e-2654.64JmjC domain-containing protein n=1 Tax=Aphanomyces... [more]
K1R795_CRAGI4.140e-2650.48Bifunctional arginine demethylase and lysyl-hydrox... [more]
A0A8B6GCN7_MYTGA1.690e-2551.55JmjC domain-containing protein n=1 Tax=Mytilus gal... [more]
UPI001B888FE02.640e-2549.49bifunctional arginine demethylase and lysyl-hydrox... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10530contigM-pyrifera_M_contig10530:537..1278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue7.6e-46
Seed eggNOG ortholog2880.D8LCT9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin-like domain
EggNOG OGsKOG2131@1,KOG2131@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size315
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10530.1134.1prot_M-pyrifera_M_contig10530.1134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10530 549..1278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.0723217-UTR-M-pyrifera_M_contig10530:536..5481622815561.0723217-UTR-M-pyrifera_M_contig10530:536..548Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10530 537..548 +
1692277464.4272504-UTR-M-pyrifera_M_contig10530:536..5481692277464.4272504-UTR-M-pyrifera_M_contig10530:536..548Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10530 537..548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.0846612-CDS-M-pyrifera_M_contig10530:548..7321622815561.0846612-CDS-M-pyrifera_M_contig10530:548..732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10530 549..732 +
1692277464.4400158-CDS-M-pyrifera_M_contig10530:548..7321692277464.4400158-CDS-M-pyrifera_M_contig10530:548..732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10530 549..732 +
1622815561.0972703-CDS-M-pyrifera_M_contig10530:1159..12781622815561.0972703-CDS-M-pyrifera_M_contig10530:1159..1278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10530 1160..1278 +
1692277464.450521-CDS-M-pyrifera_M_contig10530:1159..12781692277464.450521-CDS-M-pyrifera_M_contig10530:1159..1278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10530 1160..1278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10530.1134.1

>prot_M-pyrifera_M_contig10530.1134.1 ID=prot_M-pyrifera_M_contig10530.1134.1|Name=mRNA_M-pyrifera_M_contig10530.1134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MALLEGKKRWLLYPKEQAPLLHPVWPEGCHDPVFEADIETPDAVRTPAAL
LARGYEGILEAGDLLFVPAGCPHRVENLTDTLALSCNYVDATNVDASLTA
L
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mRNA from alignment at M-pyrifera_M_contig10530:537..1278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10530.1134.1 ID=mRNA_M-pyrifera_M_contig10530.1134.1|Name=mRNA_M-pyrifera_M_contig10530.1134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=742bp|location=Sequence derived from alignment at M-pyrifera_M_contig10530:537..1278+ (Macrocystis pyrifera P11B4 male)
TCCCACTTTTGGATGGCGCTGCTCGAGGGCAAGAAACGGTGGCTCCTCTA CCCCAAAGAACAGGCCCCCCTCCTGCACCCGGTCTGGCCGGAGGGTTGCC ACGACCCCGTCTTTGAGGCGGACATTGAAACGCCGGATGCGGTTCGAACT CCCGCGGCGCTTCTAGCGAGAGGATATGAAGGAATCCTGGAGGCCGGTGC GACCTGTTCGATACAACGATTGTCAGATTGTCCGACAGTTCCGTCGTTTT TGCCGGAAAAAACGTTTGTCCTTCATACGTACTCTTGGCGAGAATAGTGT TGGCATGTACATAGAAACGATCCACTTCTCTGGCATTTGTGGGGCAGGGC TAGGCAGGGTCGCGTTGTTTTTTGTTTTCACGAGAGAGTTCCTGGTATCA ACAGTACGTATGTCCCATTCTATCCCGATTTATGAGGATCGTTGGGATTT TGTACTACAGCGGTACTCAAACCTCCCGCATATTTTACGCAACAGCTGTA GGTTTTAGCTCGTCGGCGTTGTCTCTCGCGTGTTGTGCCTTGGGCCTTGT TGTCGCAATCTGACTCTGACCGTCCGTCCCTGCGACACCACGCCGCCACG CCAACCGGCCTCGTACGTCGCAGGGGACCTTCTGTTTGTGCCGGCCGGCT GTCCTCATCGAGTCGAGAACCTGACAGACACGCTGGCCCTCTCTTGTAAC TACGTGGACGCGACGAACGTGGATGCGTCGCTGACGGCCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10530:537..1278+

>mRNA_M-pyrifera_M_contig10530.1134.1 ID=mRNA_M-pyrifera_M_contig10530.1134.1|Name=mRNA_M-pyrifera_M_contig10530.1134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig10530:537..1278+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTGCTCGAGGGCAAGAAACGGTGGCTCCTCTACCCCAAAGAACA
GGCCCCCCTCCTGCACCCGGTCTGGCCGGAGGGTTGCCACGACCCCGTCT
TTGAGGCGGACATTGAAACGCCGGATGCGGTTCGAACTCCCGCGGCGCTT
CTAGCGAGAGGATATGAAGGAATCCTGGAGGCCGATGGCGCTGCTCGAGG
GCAAGAAACGGTGGCTCCTCTACCCCAAAGAACAGGCCCCCCTCCTGCAC
CCGGTCTGGCCGGAGGGTTGCCACGACCCCGTCTTTGAGGCGGACATTGA
AACGCCGGATGCGGTTCGAACTCCCGCGGCGCTTCTAGCGAGAGGATATG
AAGGAATCCTGGAGGCCGGGGACCTTCTGTTTGTGCCGGCCGGCTGTCCT
CATCGAGTCGAGAACCTGACAGACACGCTGGCCCTCTCTTGTAACTACGT
GGACGCGACGAACGTGGATGCGTCGCTGACGGCCCTCGGGACCTTCTGTT
TGTGCCGGCCGGCTGTCCTCATCGAGTCGAGAACCTGACAGACACGCTGG
CCCTCTCTTGTAACTACGTGGACGCGACGAACGTGGATGCGTCGCTGACG
GCCCTC
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