mRNA_M-pyrifera_M_contig105243.1127.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105243.1127.1
Unique NamemRNA_M-pyrifera_M_contig105243.1127.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A6CAD4_9PLAN (Uncharacterized protein n=21 Tax=Planctomycetaceae TaxID=126 RepID=A6CAD4_9PLAN)

HSP 1 Score: 330 bits (847), Expect = 8.560e-111
Identity = 154/160 (96.25%), Postives = 159/160 (99.38%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHAR V+PLLDQGVAALV+DLH+RGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGM+TGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLID+QTPIRELV
Sbjct:  275 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARSVIPLLDQGVAALVEDLHERGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMKTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDEQTPIRELV 434          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A517VW50_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VW50_9PLAN)

HSP 1 Score: 317 bits (813), Expect = 1.850e-105
Identity = 149/160 (93.12%), Postives = 154/160 (96.25%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFLLARRAVEAGARCVTCSFAHFDWHGNNF +ARKVVPLLDQGVAALV+DLH+RGMD+DVTV+VWGEFGRTPKIN  AGRDHWPRVHAALMAGGGMQ GQVIGSTNRL EEAVDRPVHMQEVFATLYHNLGIDVASTTIEDN GRPQYLIDQQTPIRELV
Sbjct:  289 RFLLARRAVEAGARCVTCSFAHFDWHGNNFAYARKVVPLLDQGVAALVEDLHERGMDQDVTVIVWGEFGRTPKINPRAGRDHWPRVHAALMAGGGMQNGQVIGSTNRLAEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNTGRPQYLIDQQTPIRELV 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: UPI00141DF014 (DUF1501 domain-containing protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141DF014)

HSP 1 Score: 295 bits (756), Expect = 7.470e-97
Identity = 137/160 (85.62%), Postives = 148/160 (92.50%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARR VEAGARCVTCSFAHFDWHGNNFG+ARKVVPLLDQGVAALVQDLH+RG+DKDVTVLVWGEFGRTPKIN+ AGRDHWPRVHAAL+AGGGM+TGQVIGSTNRLGEEA  RPVHMQEVFAT+Y NLGIDVA  TI D+NGRPQYL++QQ  I EL+
Sbjct:  288 RFLQARRLVEAGARCVTCSFAHFDWHGNNFGNARKVVPLLDQGVAALVQDLHERGLDKDVTVLVWGEFGRTPKINERAGRDHWPRVHAALLAGGGMKTGQVIGSTNRLGEEAATRPVHMQEVFATVYKNLGIDVAQVTIPDHNGRPQYLVEQQDVIHELI 447          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A518DLY3_9BACT (Uncharacterized protein n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DLY3_9BACT)

HSP 1 Score: 295 bits (755), Expect = 1.090e-96
Identity = 138/160 (86.25%), Postives = 147/160 (91.88%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARR VEAG RCVT SFAHFDWHGNNFG ARKVVPLLDQGVAALV+DLH+RG+D+DVTVLVWGEFGRTPKIN+ AGRDHWP VHAALMAGGGMQTGQVIGSTNRL E A DRPVHMQEVFATLYHNLGIDVA+TTI D+NGRPQYL+D + PIRELV
Sbjct:  289 RFLQARRLVEAGVRCVTLSFAHFDWHGNNFGSARKVVPLLDQGVAALVEDLHERGLDRDVTVLVWGEFGRTPKINERAGRDHWPSVHAALMAGGGMQTGQVIGSTNRLAEVAEDRPVHMQEVFATLYHNLGIDVATTTIPDHNGRPQYLVDHREPIRELV 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A7C7X866_9PLAN (DUF1501 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X866_9PLAN)

HSP 1 Score: 293 bits (750), Expect = 6.200e-96
Identity = 134/160 (83.75%), Postives = 149/160 (93.12%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARR VEAGARCVTCSFAHFDWHGNNFG+ARKVVPLLD+G+AALV+DLH RG+DKDVTV+VWGEFGRTPKIN  AGRDHWP VHAAL+AGGGM+TGQVIGSTNRL E A DRPVHMQEVFAT+YHNLGIDV++TTI D+NGRPQYL+++Q PIRELV
Sbjct:  289 RFLQARRLVEAGARCVTCSFAHFDWHGNNFGNARKVVPLLDRGIAALVEDLHQRGLDKDVTVVVWGEFGRTPKINPRAGRDHWPSVHAALLAGGGMRTGQVIGSTNRLAEVADDRPVHMQEVFATIYHNLGIDVSTTTIPDHNGRPQYLLERQAPIRELV 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A2E7LGB3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7LGB3_9PLAN)

HSP 1 Score: 289 bits (739), Expect = 2.840e-94
Identity = 131/160 (81.88%), Postives = 148/160 (92.50%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARR VEAGARCVTCSFAHFDWHG+NF HARKVVPLLDQG+AALV+D+HDRG++KDVTV+VWGEFGRTPKINK+AGRDHWP VHAAL+AGGGM+ GQ IGSTNRL E A DRPVHMQEVFATLY+NLGI++A+ TI D+NGRPQYL+D+Q PIRELV
Sbjct:  289 RFLQARRLVEAGARCVTCSFAHFDWHGSNFAHARKVVPLLDQGIAALVEDIHDRGLEKDVTVIVWGEFGRTPKINKSAGRDHWPTVHAALLAGGGMRMGQAIGSTNRLAESAEDRPVHMQEVFATLYNNLGINLATATIPDHNGRPQYLLDRQQPIRELV 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A517VA83_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VA83_9PLAN)

HSP 1 Score: 284 bits (726), Expect = 2.610e-92
Identity = 132/160 (82.50%), Postives = 145/160 (90.62%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARRAVEAGAR VTCSFA FD+H +NFG  RKV+PLLDQGVAALV+DLH+RG++KDVTVLVWGEFGRTPKINKN GRDHW RVHA LMAGGGMQTGQVIGSTN+  EEAVDRPVHMQEVFATLYHNLGID A+TTI DNNGRPQYL+++  PI+ELV
Sbjct:  289 RFLQARRAVEAGARMVTCSFADFDYHSDNFGRGRKVIPLLDQGVAALVEDLHERGLEKDVTVLVWGEFGRTPKINKNGGRDHWSRVHAGLMAGGGMQTGQVIGSTNKWAEEAVDRPVHMQEVFATLYHNLGIDTATTTIPDNNGRPQYLLERHQPIQELV 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A517RI92_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RI92_9PLAN)

HSP 1 Score: 280 bits (715), Expect = 1.190e-90
Identity = 128/160 (80.00%), Postives = 145/160 (90.62%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARRAVEAGAR VTCSFA FD+H +NFG  RKV+PLLDQGVAALV+DLH+RG+++DVTV+VWGEFGRTPKINK AGRDHWPRVHA L+AGGGMQTGQVIGST++  E AVDRPVHMQ+VFATLYHNLGID  +TTI DNNGRPQYLI++Q PIREL+
Sbjct:  289 RFLQARRAVEAGARMVTCSFADFDYHSDNFGRGRKVIPLLDQGVAALVEDLHERGLEQDVTVIVWGEFGRTPKINKKAGRDHWPRVHAGLLAGGGMQTGQVIGSTDKWAEAAVDRPVHMQDVFATLYHNLGIDTVTTTIPDNNGRPQYLIERQEPIRELI 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A0A2D5GUH3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2D5GUH3_9PLAN)

HSP 1 Score: 279 bits (714), Expect = 1.690e-90
Identity = 128/160 (80.00%), Postives = 145/160 (90.62%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARRAVEAGAR VTCSFA FD+H +NFG  RKV+PLLDQGVAALV+DLH+RG+DKDVTV+VWGEFGRTPKIN+ AGRDHW RVHA L+AGGGMQ GQVIGST+++ E AVDRPVHMQEVFATLYHNLGID A+TTI DNNGRPQYL+++Q PIREL+
Sbjct:  289 RFLQARRAVEAGARMVTCSFADFDYHSDNFGRGRKVIPLLDQGVAALVEDLHERGLDKDVTVIVWGEFGRTPKINEKAGRDHWSRVHAGLLAGGGMQAGQVIGSTDKVAEVAVDRPVHMQEVFATLYHNLGIDAATTTIPDNNGRPQYLLERQAPIRELI 448          
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Match: A6C745_9PLAN (Uncharacterized protein n=12 Tax=Gimesia TaxID=1649453 RepID=A6C745_9PLAN)

HSP 1 Score: 278 bits (712), Expect = 3.380e-90
Identity = 128/160 (80.00%), Postives = 144/160 (90.00%), Query Frame = 1
Query:    1 RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQDLHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQVIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLIDQQTPIRELV 480
            RFL ARRAVEAGAR VTCSFA FD+H +NFG  RKV+PLLDQGVAALV+DLH+RG+DKDVTV+VWGEFGRTPKIN+ AGRDHW RVHA L+AGGGMQ GQVIGST++  E AVDRPVHMQEVFATLYHNLGID A+TTI DNNGRPQYL+++Q PIREL+
Sbjct:  289 RFLQARRAVEAGARMVTCSFADFDYHSDNFGRGRKVIPLLDQGVAALVEDLHERGLDKDVTVIVWGEFGRTPKINEKAGRDHWSRVHAGLLAGGGMQAGQVIGSTDKWAEAAVDRPVHMQEVFATLYHNLGIDAATTTIPDNNGRPQYLLERQAPIRELI 448          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105243.1127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A6CAD4_9PLAN8.560e-11196.25Uncharacterized protein n=21 Tax=Planctomycetaceae... [more]
A0A517VW50_9PLAN1.850e-10593.13Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
UPI00141DF0147.470e-9785.63DUF1501 domain-containing protein n=1 Tax=Rubinisp... [more]
A0A518DLY3_9BACT1.090e-9686.25Uncharacterized protein n=1 Tax=Lignipirellula cre... [more]
A0A7C7X866_9PLAN6.200e-9683.75DUF1501 domain-containing protein n=1 Tax=Planctom... [more]
A0A2E7LGB3_9PLAN2.840e-9481.88Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517VA83_9PLAN2.610e-9282.50Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A517RI92_9PLAN1.190e-9080.00Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A2D5GUH3_9PLAN1.690e-9080.00Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
A6C745_9PLAN3.380e-9080.00Uncharacterized protein n=12 Tax=Gimesia TaxID=164... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105243contigM-pyrifera_M_contig105243:3..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score328.9
Seed ortholog evalue1.3e-87
Seed eggNOG ortholog344747.PM8797T_27195
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.protein conserved in bacteria
EggNOG OGs2IYCY@203682,COG4102@1,COG4102@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.6152186-CDS-M-pyrifera_M_contig105243:2..4851622815560.6152186-CDS-M-pyrifera_M_contig105243:2..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105243 3..485 +
1692277464.1996624-CDS-M-pyrifera_M_contig105243:2..4851692277464.1996624-CDS-M-pyrifera_M_contig105243:2..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105243 3..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105243.1127.1prot_M-pyrifera_M_contig105243.1127.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105243 3..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105243.1127.1

>prot_M-pyrifera_M_contig105243.1127.1 ID=prot_M-pyrifera_M_contig105243.1127.1|Name=mRNA_M-pyrifera_M_contig105243.1127.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
RFLLARRAVEAGARCVTCSFAHFDWHGNNFGHARKVVPLLDQGVAALVQD
LHDRGMDKDVTVLVWGEFGRTPKINKNAGRDHWPRVHAALMAGGGMQTGQ
VIGSTNRLGEEAVDRPVHMQEVFATLYHNLGIDVASTTIEDNNGRPQYLI
DQQTPIRELV*
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mRNA from alignment at M-pyrifera_M_contig105243:3..485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105243.1127.1 ID=mRNA_M-pyrifera_M_contig105243.1127.1|Name=mRNA_M-pyrifera_M_contig105243.1127.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig105243:3..485+ (Macrocystis pyrifera P11B4 male)
CGCTTTCTGCTGGCCCGACGGGCAGTGGAAGCAGGCGCACGCTGTGTCAC CTGCAGCTTCGCTCACTTTGACTGGCACGGTAATAACTTTGGTCATGCCC GCAAGGTCGTTCCCCTGCTCGACCAGGGAGTCGCGGCCCTGGTTCAGGAT CTGCATGATCGCGGCATGGATAAAGATGTGACCGTTTTGGTCTGGGGCGA ATTTGGTCGCACGCCCAAGATCAACAAAAACGCTGGCCGTGATCACTGGC CCCGCGTGCACGCCGCCCTGATGGCAGGCGGAGGCATGCAGACAGGCCAG GTGATCGGTTCGACTAACCGACTGGGTGAGGAAGCCGTTGATCGCCCCGT GCATATGCAGGAAGTCTTCGCGACGCTGTATCACAATCTGGGCATCGATG TCGCGTCCACGACAATCGAAGATAACAACGGACGTCCTCAGTACCTGATC GATCAGCAGACTCCCATCCGCGAACTCGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105243:3..485+

>mRNA_M-pyrifera_M_contig105243.1127.1 ID=mRNA_M-pyrifera_M_contig105243.1127.1|Name=mRNA_M-pyrifera_M_contig105243.1127.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig105243:3..485+ (Macrocystis pyrifera P11B4 male)
CGCTTTCTGCTGGCCCGACGGGCAGTGGAAGCAGGCGCACGCTGTGTCAC
CTGCAGCTTCGCTCACTTTGACTGGCACGGTAATAACTTTGGTCATGCCC
GCAAGGTCGTTCCCCTGCTCGACCAGGGAGTCGCGGCCCTGGTTCAGGAT
CTGCATGATCGCGGCATGGATAAAGATGTGACCGTTTTGGTCTGGGGCGA
ATTTGGTCGCACGCCCAAGATCAACAAAAACGCTGGCCGTGATCACTGGC
CCCGCGTGCACGCCGCCCTGATGGCAGGCGGAGGCATGCAGACAGGCCAG
GTGATCGGTTCGACTAACCGACTGGGTGAGGAAGCCGTTGATCGCCCCGT
GCATATGCAGGAAGTCTTCGCGACGCTGTATCACAATCTGGGCATCGATG
TCGCGTCCACGACAATCGAAGATAACAACGGACGTCCTCAGTACCTGATC
GATCAGCAGACTCCCATCCGCGAACTCGTCTGACGCTTTCTGCTGGCCCG
ACGGGCAGTGGAAGCAGGCGCACGCTGTGTCACCTGCAGCTTCGCTCACT
TTGACTGGCACGGTAATAACTTTGGTCATGCCCGCAAGGTCGTTCCCCTG
CTCGACCAGGGAGTCGCGGCCCTGGTTCAGGATCTGCATGATCGCGGCAT
GGATAAAGATGTGACCGTTTTGGTCTGGGGCGAATTTGGTCGCACGCCCA
AGATCAACAAAAACGCTGGCCGTGATCACTGGCCCCGCGTGCACGCCGCC
CTGATGGCAGGCGGAGGCATGCAGACAGGCCAGGTGATCGGTTCGACTAA
CCGACTGGGTGAGGAAGCCGTTGATCGCCCCGTGCATATGCAGGAAGTCT
TCGCGACGCTGTATCACAATCTGGGCATCGATGTCGCGTCCACGACAATC
GAAGATAACAACGGACGTCCTCAGTACCTGATCGATCAGCAGACTCCCAT
CCGCGAACTCGTCTGA
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