mRNA_M-pyrifera_M_contig105241.1125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105241.1125.1
Unique NamemRNA_M-pyrifera_M_contig105241.1125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A6N7FPY7_9ACTN (Flagellar M-ring protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FPY7_9ACTN)

HSP 1 Score: 212 bits (540), Expect = 1.300e-62
Identity = 114/211 (54.03%), Postives = 153/211 (72.51%), Query Frame = 1
Query:    4 AVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIES--GATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTSGSSNQTREFE 630
            AV+ G+ +   ++   ++APL+ DLE +DAAAV + L S GVPYEL D GRTVLVPRDQ+Y+LR+ L+ +GLP GG+ G+S+LD+QGIT+++F QR+ +QRALEGEL+  +  +DAV+ A+V LV+P+DD FA  D  ++ASVLI +  G TL P+QVQAIVNLVS SV+GL  +A++VAD SG VL APG    E    S    QT  FE
Sbjct:   32 AVILGVLVAGRFSGKPDLAPLFTDLEASDAAAVTERLTSDGVPYELGDGGRTVLVPRDQLYELRINLAASGLPSGGTSGWSVLDDQGITASEFSQRVGYQRALEGELSKMVSSLDAVETATVRLVLPRDDAFALSDSKSSASVLIRTRPGRTLEPQQVQAIVNLVSSSVQGLDPEAVSVADTSGSVLVAPGSGMAEGVAGSSQQQQTDAFE 242          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A372J6T4_9ACTN (Flagellar M-ring protein n=1 Tax=Geodermatophilus sp. LHW52908 TaxID=2303986 RepID=A0A372J6T4_9ACTN)

HSP 1 Score: 205 bits (521), Expect = 6.230e-60
Identity = 108/198 (54.55%), Postives = 146/198 (73.74%), Query Frame = 1
Query:    7 VLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIE--SGATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAG 594
            VLGGL +F  W +T   APL+++L + DA+A+VDELN+ GV YELAD G T++VP DQVYDLRL +S  GLP G   GY+LLD QGITS++FQQ++ +QRA+EGELA T+  +D V +A VH+ +P+D++F +D    TASVL++  +G TL+ EQVQA+ NLVS SV+ +  D +TVAD +G VL+APGQ     AG
Sbjct:   35 VLGGL-VFYRWITTPTYAPLFSNLASTDASAIVDELNASGVGYELADGGSTIMVPNDQVYDLRLSMSGKGLPAGSETGYALLDEQGITSSEFQQQVQYQRAIEGELAMTLESLDGVRSAVVHVALPEDEVFVSDQGEPTASVLLDLAAGTTLSGEQVQAVTNLVSSSVQDMEPDQVTVADSTGRVLSAPGQGVTAAAG 231          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A238W861_9ACTN (Flagellar basal-body M-ring protein/flagellar hook-basal body protein (FliF) n=1 Tax=Blastococcus sp. DSM 44272 TaxID=1938746 RepID=A0A238W861_9ACTN)

HSP 1 Score: 192 bits (489), Expect = 1.820e-58
Identity = 97/190 (51.05%), Postives = 140/190 (73.68%), Query Frame = 1
Query:    7 VLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIE--SGATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPG 570
            +LGG + F  W +    APL+++L + DA+A+VDELN+ GV YEL D G+T++V +DQVYDLRL +S  GLP G   GY+LLD QGIT+++FQQ++ +QRALEGEL+ T+  +D V++A VH+ +P+D++F  D    TASVL++  +G TL+ EQ+QA+ NLVS S++G+    +TV D +G VLAAPG
Sbjct:   35 LLGGFFFFR-WITAPTQAPLFSNLASTDASAIVDELNAAGVAYELTDGGQTIMVAKDQVYDLRLTMSGQGLPAGQDTGYALLDEQGITTSEFQQQVTYQRALEGELSKTLEALDGVNSAVVHVALPEDEVFVTDQADPTASVLLDLAAGTTLSGEQIQAVTNLVSSSIQGMEPGQVTVTDAAGQVLAAPG 223          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A1Q8CYD2_9PSEU (Flagellar M-ring protein n=1 Tax=Actinophytocola xanthii TaxID=1912961 RepID=A0A1Q8CYD2_9PSEU)

HSP 1 Score: 201 bits (512), Expect = 2.090e-58
Identity = 107/211 (50.71%), Postives = 151/211 (71.56%), Query Frame = 1
Query:    4 AVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIES--GATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTSGSSNQTREFE 630
            A++ G+W+F+SW S    +PL+++L   DA+A+VD+L++ GVPYEL D G+TV VP+DQ+Y LRL +S AGLP     GYSLLD QG+T+++F Q++ +QRALEGEL+ TI  ID V+AA+VHLVIP+ D+F+ D    TA+++I    G  ++ + VQA+V+L + SVEGL  D ITVAD +G VLAAPGQ     +G  GS   T ++E
Sbjct:   34 AIVIGVWVFASWLSKPTYSPLFSNLAAKDASAIVDQLDASGVPYELTDGGQTVQVPKDQIYSLRLKMSAAGLPAQEDTGYSLLDQQGVTTSEFMQQVGYQRALEGELSKTIESIDGVNAATVHLVIPEKDVFSDDASKPTAAIMIAESPGKPVSADTVQAVVHLTASSVEGLATDDITVADSNGKVLAAPGQA-VTGSGGGGSDQATTDYE 243          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: UPI0011DFCE17 (flagellar M-ring protein FliF n=1 Tax=Nocardioides rubriscoriae TaxID=642762 RepID=UPI0011DFCE17)

HSP 1 Score: 201 bits (510), Expect = 2.950e-58
Identity = 114/213 (53.52%), Postives = 148/213 (69.48%), Query Frame = 1
Query:    1 AAVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIES--GATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTSGSSNQTREFEQ 633
            A +LGG  +F  WAS   MAPLY+DL  +DA+AVVDEL++QGV YELAD G  ++VPRD VY  R+ LS  G+P+G   GYSLLDNQG+ ++ FQ++  F+RA+EGELA TI  ID VD A VHL +P+ ++F+     ATASVL+++  G TL  +QVQA+VNLV+ SVEGL    +TVAD SG VL+APG       G SG S+  R+  Q
Sbjct:   37 ALLLGGFMVFR-WASAPSMAPLYSDLSASDASAVVDELDAQGVKYELADGGTMIMVPRDVVYQTRIDLSAQGIPEGSDGGYSLLDNQGLATSDFQEQTDFKRAMEGELANTIEAIDGVDTAVVHLALPKKEVFSDSQQPATASVLVDTKPGVTLEQQQVQAVVNLVAASVEGLDPGKVTVADSSGAVLSAPG-------GESGVSSMARDQRQ 241          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A010Z0J8_9ACTN (Flagellar M-ring protein n=1 Tax=Cryptosporangium arvum DSM 44712 TaxID=927661 RepID=A0A010Z0J8_9ACTN)

HSP 1 Score: 201 bits (510), Expect = 3.190e-58
Identity = 114/212 (53.77%), Postives = 149/212 (70.28%), Query Frame = 1
Query:    1 AAVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIES--GATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTSGSSNQTREFE 630
            A V+GG + F+SWAS   MA L+++L   DA+A+V++L +  V YELAD G T++VPRDQVYDLRL ++  GLP G   GYSLLD QG+T+++F Q +++QRALEGELA+TI  ID V+AA+VHL +PQ D+FA D    TASVL+++  G  L   QVQAI+NLVS SVEG+ +  +T+A   G VLA  GQT     G S SS QT  FE
Sbjct:   33 ALVVGG-YFFASWASKPTMASLFSNLSATDASAIVEKLGAANVEYELADGGATIMVPRDQVYDLRLQMAGQGLPAGEDTGYSLLDKQGVTTSEFMQHVSYQRALEGELASTISSIDGVEAATVHLALPQKDVFADDQQRPTASVLVKTAAGKDLTDSQVQAIINLVSSSVEGMDSSDVTLAGADGSVLAKGGQTTTAAGGDS-SSKQTEAFE 242          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A7W7WYE6_9PSEU (Flagellar M-ring protein n=2 Tax=Saccharothrix violaceirubra TaxID=413306 RepID=A0A7W7WYE6_9PSEU)

HSP 1 Score: 201 bits (510), Expect = 3.660e-58
Identity = 113/215 (52.56%), Postives = 156/215 (72.56%), Query Frame = 1
Query:    4 AVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIE--SGATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTSGSSNQTRE---FEQ 633
            AVL G+ LF+ WAST   +PL+ +L + DAAA+V++L++ G  YELAD G+TV+VP++QVY LR+ LS  GLP     GY+LLD QG+T+++F Q++ +QRA+EGELA TI+ I+ V+ A+VHLVIP+ D+F+ D    TA+V+++  SG  L+ +QVQAIV+LV+ SVEGL  D ITVAD +G VLAAPG      A T GS NQ ++   FEQ
Sbjct:   34 AVLVGVVLFTGWASTPNYSPLFTNLASKDAAAIVEQLDAAGTSYELADGGQTVMVPKEQVYQLRIQLSADGLPAQDDTGYALLDQQGVTTSEFMQQVGYQRAMEGELANTIKSINGVETATVHLVIPKKDVFSDDSSKPTAAVMVDTASGKDLSADQVQAIVHLVASSVEGLDPDDITVADSTGTVLAAPGG-----ASTGGSGNQNQQTVAFEQ 243          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A5Q2RG13_9ACTN (Flagellar M-ring protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RG13_9ACTN)

HSP 1 Score: 200 bits (508), Expect = 9.590e-58
Identity = 112/212 (52.83%), Postives = 148/212 (69.81%), Query Frame = 1
Query:    4 AVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIES--GATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTSGSSNQTREFEQ 633
            AV+ GL +F+  A   + A LYA+LE  DAAAV + L++ GV YELAD G T+ VPRD +Y+ R+ LS  G+  GG +G+S+LD QGIT+++F QR+ +QRALEGELA TIR I+ V++A+VHL +P+D  FA DD  A+ASVLI +  G TL   QVQAIVNLV+ SV+ L    +TVAD SG+VLAAPGQ   + AG   +  Q   FE+
Sbjct:   34 AVVVGLVVFTKLAGGTDYATLYANLEPGDAAAVTERLDADGVSYELADGGGTIRVPRDVLYETRMQLSADGVASGGQEGWSILDGQGITASEFSQRVGYQRALEGELARTIRSIEGVESATVHLALPRDTAFALDDTEASASVLISTRGGTTLDSMQVQAIVNLVASSVDKLEPSDVTVADSSGMVLAAPGQRSVDYAGNDLNMRQAAAFEE 245          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A366ZSK5_9ACTN (Flagellar M-ring protein n=1 Tax=Geodermatophilus sp. TF02-6 TaxID=2250575 RepID=A0A366ZSK5_9ACTN)

HSP 1 Score: 199 bits (506), Expect = 1.060e-57
Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 1
Query:    7 VLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIE--SGATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAG 594
            +LGG + F  W +    APL+++L  +DA+A+VDELN+ GV Y+LAD G T++VP DQVYDLRL +S  GLP G   GY+LLD QGIT+++FQQ++++QRALEGELA T+  +D V +A VH+ +P+D++FA D   ATASVL++   G  L+ EQVQA+ NLVS S++ +  D +TVAD +G VL+APGQ     AG
Sbjct:   35 LLGGFF-FYRWITAPTYAPLFSNLAASDASAIVDELNAAGVAYQLADGGATIMVPNDQVYDLRLSMSGKGLPAGSDTGYALLDEQGITTSEFQQQVSYQRALEGELATTLEALDGVRSAVVHVALPEDEVFATDQEQATASVLLDLAPGTELSGEQVQAVTNLVSSSIQDMDPDQVTVADSAGAVLSAPGQGVTAAAG 231          
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Match: A0A6G6WBD4_9ACTN (Flagellar M-ring protein n=1 Tax=Nocardioides anomalus TaxID=2712223 RepID=A0A6G6WBD4_9ACTN)

HSP 1 Score: 199 bits (506), Expect = 1.080e-57
Identity = 110/195 (56.41%), Postives = 145/195 (74.36%), Query Frame = 1
Query:    1 AAVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQGRTVLVPRDQVYDLRLGLSTAGLP-DGGSDGYSLLDNQGITSTQFQQRIAFQRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIES--GATLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQT 576
            A +LGG  +F  WAST    PLY++L  +DA+AVVD+L++QG PYEL D G TV+VPRDQVY  R+ LS  GLP D  + GYS+LD+QG++ +Q QQ + F+RA+EGEL+ TI  ID V+ A VHL IPQ ++FA +    TASVL+++  G+TL PEQVQA+VNLV+ SV+GL  D +TVAD +G VL+APGQT
Sbjct:   33 ALLLGGFLVFR-WASTPSYGPLYSNLSASDASAVVDQLDTQGTPYELTDGGSTVMVPRDQVYATRIALSGEGLPADSDNQGYSILDDQGMSLSQDQQDVNFKRAMEGELSKTIEAIDGVETAVVHLAIPQKEVFAEEQDPVTASVLVKTRPGSTLDPEQVQAVVNLVASSVDGLDPDQVTVADATGAVLSAPGQT 226          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105241.1125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7FPY7_9ACTN1.300e-6254.03Flagellar M-ring protein n=1 Tax=Acidimicrobiia ba... [more]
A0A372J6T4_9ACTN6.230e-6054.55Flagellar M-ring protein n=1 Tax=Geodermatophilus ... [more]
A0A238W861_9ACTN1.820e-5851.05Flagellar basal-body M-ring protein/flagellar hook... [more]
A0A1Q8CYD2_9PSEU2.090e-5850.71Flagellar M-ring protein n=1 Tax=Actinophytocola x... [more]
UPI0011DFCE172.950e-5853.52flagellar M-ring protein FliF n=1 Tax=Nocardioides... [more]
A0A010Z0J8_9ACTN3.190e-5853.77Flagellar M-ring protein n=1 Tax=Cryptosporangium ... [more]
A0A7W7WYE6_9PSEU3.660e-5852.56Flagellar M-ring protein n=2 Tax=Saccharothrix vio... [more]
A0A5Q2RG13_9ACTN9.590e-5852.83Flagellar M-ring protein n=1 Tax=Actinomarinicola ... [more]
A0A366ZSK5_9ACTN1.060e-5752.53Flagellar M-ring protein n=1 Tax=Geodermatophilus ... [more]
A0A6G6WBD4_9ACTN1.080e-5756.41Flagellar M-ring protein n=1 Tax=Nocardioides anom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105241contigM-pyrifera_M_contig105241:5..637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score196.8
Seed ortholog evalue1e-47
Seed eggNOG ortholog1151122.AQYD01000006_gene1877
Preferred namefliF
KEGG koko:K02409
KEGG TC3.A.6.2,3.A.6.3
KEGG Pathwayko02040,map02040
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Flagellar M-ring protein C-terminal
EggNOG OGs2HG9F@201174,4FN1P@85023,COG1766@1,COG1766@2
COG Functional cat.NU
Best tax levelMicrobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035,ko02044
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.5422895-CDS-M-pyrifera_M_contig105241:4..6371622815560.5422895-CDS-M-pyrifera_M_contig105241:4..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105241 5..637 +
1692277464.1642003-CDS-M-pyrifera_M_contig105241:4..6371692277464.1642003-CDS-M-pyrifera_M_contig105241:4..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105241 5..637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105241.1125.1prot_M-pyrifera_M_contig105241.1125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105241 5..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105241.1125.1

>prot_M-pyrifera_M_contig105241.1125.1 ID=prot_M-pyrifera_M_contig105241.1125.1|Name=mRNA_M-pyrifera_M_contig105241.1125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
AAVLGGLWLFSSWASTVEMAPLYADLETADAAAVVDELNSQGVPYELADQ
GRTVLVPRDQVYDLRLGLSTAGLPDGGSDGYSLLDNQGITSTQFQQRIAF
QRALEGELAATIRHIDAVDAASVHLVIPQDDLFAADDIHATASVLIESGA
TLAPEQVQAIVNLVSGSVEGLRADAITVADQSGLVLAAPGQTPFERAGTS
GSSNQTREFEQ
back to top

mRNA from alignment at M-pyrifera_M_contig105241:5..637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105241.1125.1 ID=mRNA_M-pyrifera_M_contig105241.1125.1|Name=mRNA_M-pyrifera_M_contig105241.1125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig105241:5..637+ (Macrocystis pyrifera P11B4 male)
GCCGCCGTCCTCGGCGGGCTCTGGCTGTTCAGCAGCTGGGCGTCGACCGT CGAGATGGCGCCGCTCTACGCCGATCTCGAGACCGCCGACGCCGCTGCGG TCGTCGACGAGCTCAACTCACAGGGTGTGCCCTACGAACTGGCCGACCAG GGGCGCACCGTGCTCGTTCCTCGCGACCAGGTGTACGACCTCCGCCTCGG ACTCAGCACGGCGGGCCTTCCCGATGGTGGCTCCGACGGCTACTCGTTGC TGGACAACCAGGGCATCACCTCCACCCAGTTCCAACAGCGCATCGCGTTC CAGCGAGCACTCGAGGGTGAGCTCGCCGCCACCATTCGCCACATCGACGC CGTCGACGCCGCCAGCGTCCATCTGGTGATCCCCCAGGACGACTTGTTCG CCGCGGACGACATCCACGCCACGGCCAGCGTGCTCATCGAGAGCGGAGCG ACGCTCGCCCCCGAACAGGTGCAAGCGATCGTCAACCTCGTCTCCGGCAG CGTCGAAGGCCTCCGCGCCGACGCGATCACCGTCGCCGACCAGAGCGGCC TCGTACTCGCCGCACCTGGACAGACCCCGTTCGAACGGGCCGGCACGAGC GGGTCGTCCAACCAGACCCGGGAGTTCGAGCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105241:5..637+

>mRNA_M-pyrifera_M_contig105241.1125.1 ID=mRNA_M-pyrifera_M_contig105241.1125.1|Name=mRNA_M-pyrifera_M_contig105241.1125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig105241:5..637+ (Macrocystis pyrifera P11B4 male)
GCCGCCGTCCTCGGCGGGCTCTGGCTGTTCAGCAGCTGGGCGTCGACCGT
CGAGATGGCGCCGCTCTACGCCGATCTCGAGACCGCCGACGCCGCTGCGG
TCGTCGACGAGCTCAACTCACAGGGTGTGCCCTACGAACTGGCCGACCAG
GGGCGCACCGTGCTCGTTCCTCGCGACCAGGTGTACGACCTCCGCCTCGG
ACTCAGCACGGCGGGCCTTCCCGATGGTGGCTCCGACGGCTACTCGTTGC
TGGACAACCAGGGCATCACCTCCACCCAGTTCCAACAGCGCATCGCGTTC
CAGCGAGCACTCGAGGGTGAGCTCGCCGCCACCATTCGCCACATCGACGC
CGTCGACGCCGCCAGCGTCCATCTGGTGATCCCCCAGGACGACTTGTTCG
CCGCGGACGACATCCACGCCACGGCCAGCGTGCTCATCGAGAGCGGAGCG
ACGCTCGCCCCCGAACAGGTGCAAGCGATCGTCAACCTCGTCTCCGGCAG
CGTCGAAGGCCTCCGCGCCGACGCGATCACCGTCGCCGACCAGAGCGGCC
TCGTACTCGCCGCACCTGGACAGACCCCGTTCGAACGGGCCGGCACGAGC
GGGTCGTCCAACCAGACCCGGGAGTTCGAGCAGGCCGCCGTCCTCGGCGG
GCTCTGGCTGTTCAGCAGCTGGGCGTCGACCGTCGAGATGGCGCCGCTCT
ACGCCGATCTCGAGACCGCCGACGCCGCTGCGGTCGTCGACGAGCTCAAC
TCACAGGGTGTGCCCTACGAACTGGCCGACCAGGGGCGCACCGTGCTCGT
TCCTCGCGACCAGGTGTACGACCTCCGCCTCGGACTCAGCACGGCGGGCC
TTCCCGATGGTGGCTCCGACGGCTACTCGTTGCTGGACAACCAGGGCATC
ACCTCCACCCAGTTCCAACAGCGCATCGCGTTCCAGCGAGCACTCGAGGG
TGAGCTCGCCGCCACCATTCGCCACATCGACGCCGTCGACGCCGCCAGCG
TCCATCTGGTGATCCCCCAGGACGACTTGTTCGCCGCGGACGACATCCAC
GCCACGGCCAGCGTGCTCATCGAGAGCGGAGCGACGCTCGCCCCCGAACA
GGTGCAAGCGATCGTCAACCTCGTCTCCGGCAGCGTCGAAGGCCTCCGCG
CCGACGCGATCACCGTCGCCGACCAGAGCGGCCTCGTACTCGCCGCACCT
GGACAGACCCCGTTCGAACGGGCCGGCACGAGCGGGTCGTCCAACCAGAC
CCGGGAGTTCGAGCAG
back to top