mRNA_M-pyrifera_M_contig105238.1124.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105238.1124.1
Unique NamemRNA_M-pyrifera_M_contig105238.1124.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A2N2UFI8_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2N2UFI8_9PROT)

HSP 1 Score: 128 bits (321), Expect = 5.180e-32
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLP---LDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRVAP 420
            FP  AL  RP  E   E +++P   P    G R V++L  G HY+  +    DP    P      +VL++LP    + GA RSL+GPDGLI  + RGER++ WP+G+R AGA R+ GHHA AFVG+RHFDDP L++R F RV P
Sbjct:  376 FPTRALRARPAPEPGIEWVFVPGEAPEAGAGERMVLRLVSGSHYLTALSTARDPVG-EPYEHRAESVLRSLPWPGAESGARRSLYGPDGLIAGTQRGERYLFWPMGVRDAGAQRQWGHHATAFVGRRHFDDPDLIDRRFERVEP 518          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A433HKP9_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A433HKP9_9GAMM)

HSP 1 Score: 127 bits (319), Expect = 7.130e-32
Identity = 67/139 (48.20%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRV 414
            FPG AL  RP   ++AEP   PQ  P  + G R +++L+ G H ++ +   + P +VT L    YA+L    ++ G  RSLFGPDGL++ S R ER++LWP G+ S G MRE G HAIAFVGQRHFDD  LL+R F  V
Sbjct:  350 FPGPALRLRPETADWAEPPLAPQPAPIPKPGERIILRLASGSHSLQRVYG-DQPGAVTILPSRDYAMLYAAAVEGGGRRSLFGPDGLVEGSERAERWLLWPTGVPSPGTMREQGRHAIAFVGQRHFDDADLLDRLFTPV 487          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A350SPA1_9BURK (Uncharacterized protein n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A350SPA1_9BURK)

HSP 1 Score: 127 bits (320), Expect = 7.170e-32
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALP-PTEDGRFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPL---DDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRVAP 420
            FP  AL  RP  E   E ++IP   P P    R V++L  G HY+  +  + DP    P      +VL++LP    + GA RSL+GPDGLI  + RGER++ WP+G+R AGA R+ GHHA AFVG+RHFDDP L+ R F RV P
Sbjct:  376 FPTRALRARPAPEPGIEWVFIPGEAPEPGVGERMVLRLVSGSHYLTALSTVRDPVG-EPYEHRAESVLRSLPWPGGEPGARRSLYGPDGLIAGTQRGERYLFWPMGVRDAGAQRQWGHHATAFVGRRHFDDPDLIERRFERVEP 518          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A1B4VE78_9GAMM (Uncharacterized protein n=1 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4VE78_9GAMM)

HSP 1 Score: 127 bits (318), Expect = 1.050e-31
Identity = 67/141 (47.52%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFA-EPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRVA 417
            FP  AL  RP ++  A EP  +PQ  P    G R VI+++ G HY+  + A      V P R+  Y  L++LP  DG  RSLF PDG++  ++R ER+V+WP+G+ + GAMR+ GHHA AFVG+RHFDDP LL+  FV VA
Sbjct:  354 FPTSALALRPELDRGALEPPLVPQQAPALGAGERAVIRIAHGTHYIERVYATRGAQGV-PYRLDHYDALRSLPRPDGTRRSLFAPDGIVPGTSRAERWVIWPMGVPAPGAMRQWGHHATAFVGRRHFDDPDLLDALFVPVA 493          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A7C6W3I5_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6W3I5_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 1.850e-31
Identity = 68/136 (50.00%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYF 405
            FP   ++ RP   ++AEP   PQA P    G R VI+L+ G HY++ + A + P +VT L    Y  L  +P+++G  RSLFGPDGL+  S R ER++LWP G+ S GAMRE G HAIAFVG+RHFDD  LL+R F
Sbjct:  347 FPRMDIQLRPETAQWAEPPLAPQAAPVIGYGERAVIRLASGTHYLQRLYA-DRPGTVTKLDWRDYEALYAIPVENGGRRSLFGPDGLVAGSERAERWLLWPTGVPSPGAMRERGRHAIAFVGRRHFDDADLLDRLF 481          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A0U3U8K4_9BACT (Uncharacterized protein n=3 Tax=environmental samples TaxID=48479 RepID=A0A0U3U8K4_9BACT)

HSP 1 Score: 125 bits (314), Expect = 3.250e-31
Identity = 65/138 (47.10%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASR-SLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFV 408
            FP   + PR G  +  E  ++   LP    G R+ ++++ G HYV G+   +  A   P  V     L++LP+ +GA R SL+GPDGL+  S RGERF+ WP+GI SAGAMR+ GHHA AFVG+RHFDDP LL   FV
Sbjct:  327 FPAAGVTPRAGAPQHEEWAFVAGTLPRRSPGQRWSLRIASGTHYVTGLTLDDGAAPAQPYAVRDENTLRSLPMPNGAGRRSLYGPDGLVAGSERGERFLFWPMGIASAGAMRQWGHHATAFVGRRHFDDPHLLADRFV 464          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A7U7G8B5_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Contendobacter odensis Run_B_J11 TaxID=1400861 RepID=A0A7U7G8B5_9GAMM)

HSP 1 Score: 125 bits (314), Expect = 3.640e-31
Identity = 67/136 (49.26%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYF 405
            FP  AL  +P   ++AEP   PQ  P    G R +++LS G H ++ I A + P     L    Y  L  +P+++GA RSLFGPDGL+  S R ER+ LWP+G+ SAGAMRE G HAIAFVG+RHFDD  LL+R F
Sbjct:  349 FPSPALRLQPETAQWAEPPLAPQPAPTLGHGERLILRLSAGSHALQRIYA-DRPGETIALDGRDYTALYTVPVENGAPRSLFGPDGLVAGSERAERWWLWPMGVLSAGAMRERGRHAIAFVGRRHFDDADLLDRLF 483          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: UPI00145EC8F9 (hypothetical protein n=1 Tax=Candidatus Competibacter phosphatis TaxID=221280 RepID=UPI00145EC8F9)

HSP 1 Score: 123 bits (309), Expect = 1.910e-30
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALPPTEDG-RFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYF 405
            FPG AL  RP   ++AEP  +P A P    G R V++L+   HY++ + A + P +V  L    YA L  +P+  G   SLFG DGL+  S R ER++LWP+G+ S GAMRE G HAIAFVG+RHFDD  LL+R F
Sbjct:  351 FPGPALRLRPETAQWAEPPLVPHAAPTVGAGERIVLRLAADTHYLQRVYA-SRPGTVLALEWRDYATLYAVPVVGGERHSLFGSDGLVAGSERAERWLLWPMGVPSPGAMRERGRHAIAFVGRRHFDDADLLDRLF 485          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A2N2QFZ5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-9 TaxID=2013721 RepID=A0A2N2QFZ5_9PROT)

HSP 1 Score: 123 bits (308), Expect = 3.530e-30
Identity = 67/144 (46.53%), Postives = 86/144 (59.72%), Query Frame = 1
Query:    1 FPGGALEPRPGIEEFAEPLWIPQALP-PTEDGRFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGAS---RSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRVAP 420
            FP  AL  RP  E   E ++IP   P P    R V++L  G HY+  +    D     P      +VL++LP   G S   RSL+GPDGLI  + RGER++ WP+G+R AGA R+ GHHA AFVG+RHFDDP L++R F RV P
Sbjct:  376 FPTRALRARPAPEPSIEWVFIPGEAPEPVAGERMVLRLVSGSHYLTALSTARDLVG-EPYEHRLESVLRSLPWPGGESGTRRSLYGPDGLIAGTQRGERYLFWPMGVRDAGAQRQWGHHATAFVGRRHFDDPDLIDRRFERVEP 518          
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Match: A0A509MX10_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter halodurans TaxID=2528979 RepID=A0A509MX10_9GAMM)

HSP 1 Score: 122 bits (306), Expect = 5.320e-30
Identity = 64/141 (45.39%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 FPGGALEPRPGI-EEFAEPLWIPQALPPTEDGRFVIQLSGGEHYVRGIRALNDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWPLGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRVAP 420
            FP   L  RP + EE  EP  +PQ  P    G  V++L  G H++  + +     +  PL V  Y  L++LP  +G   S FGP GL+  S R ERF+LWP+G+RSAGAMR+ GHHA+AF+G+RHFDDP L+   F R +P
Sbjct:  361 FPVAPLRLRPDLSEESGEPPLVPQQAP---SGPLVVRLDHGRHFINRVYSDAGHRTYRPLAVAAYDRLRSLPTANG-HHSFFGPYGLVPGSERPERFILWPMGVRSAGAMRQWGHHAVAFIGRRHFDDPRLVQSLFERESP 497          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105238.1124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N2UFI8_9PROT5.180e-3246.53Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]
A0A433HKP9_9GAMM7.130e-3248.20Uncharacterized protein n=1 Tax=Candidatus Competi... [more]
A0A350SPA1_9BURK7.170e-3247.22Uncharacterized protein n=4 Tax=Burkholderiales Ta... [more]
A0A1B4VE78_9GAMM1.050e-3147.52Uncharacterized protein n=1 Tax=Sulfurifustis vari... [more]
A0A7C6W3I5_9GAMM1.850e-3150.00Uncharacterized protein n=1 Tax=Xanthomonadaceae b... [more]
A0A0U3U8K4_9BACT3.250e-3147.10Uncharacterized protein n=3 Tax=environmental samp... [more]
A0A7U7G8B5_9GAMM3.640e-3149.26Uncharacterized protein n=1 Tax=Candidatus Contend... [more]
UPI00145EC8F91.910e-3048.53hypothetical protein n=1 Tax=Candidatus Competibac... [more]
A0A2N2QFZ5_9PROT3.530e-3046.53Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A509MX10_9GAMM5.320e-3045.39Uncharacterized protein n=1 Tax=Marinobacter halod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105238contigM-pyrifera_M_contig105238:5..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.9
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog1131553.JIBI01000016_gene600
Hectar predicted targeting categoryother localisation
EggNOG OGs1R4NB@1224,28H91@1,2VS45@28216,2Z7KU@2,373Z4@32003
Best tax levelNitrosomonadales
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.4645681-CDS-M-pyrifera_M_contig105238:4..4301622815560.4645681-CDS-M-pyrifera_M_contig105238:4..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105238 5..430 +
1692277464.1548038-CDS-M-pyrifera_M_contig105238:4..4301692277464.1548038-CDS-M-pyrifera_M_contig105238:4..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105238 5..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105238.1124.1prot_M-pyrifera_M_contig105238.1124.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105238 5..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105238.1124.1

>prot_M-pyrifera_M_contig105238.1124.1 ID=prot_M-pyrifera_M_contig105238.1124.1|Name=mRNA_M-pyrifera_M_contig105238.1124.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
FPGGALEPRPGIEEFAEPLWIPQALPPTEDGRFVIQLSGGEHYVRGIRAL
NDPASVTPLRVLPYAVLKNLPLDDGASRSLFGPDGLIDESARGERFVLWP
LGIRSAGAMREAGHHAIAFVGQRHFDDPGLLNRYFVRVAPP*
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mRNA from alignment at M-pyrifera_M_contig105238:5..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105238.1124.1 ID=mRNA_M-pyrifera_M_contig105238.1124.1|Name=mRNA_M-pyrifera_M_contig105238.1124.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig105238:5..430+ (Macrocystis pyrifera P11B4 male)
TTCCCCGGCGGCGCACTCGAGCCGCGGCCGGGGATCGAGGAATTCGCGGA ACCGCTGTGGATCCCGCAGGCCCTGCCGCCGACTGAGGACGGCCGATTCG TAATTCAGCTGTCCGGCGGCGAGCATTATGTGCGCGGCATCCGGGCGCTG AACGATCCTGCGTCGGTCACACCCTTGCGCGTGCTCCCCTACGCGGTATT GAAAAATCTCCCGCTGGACGACGGCGCCTCACGCAGCCTGTTCGGCCCCG ACGGACTCATCGACGAGAGCGCGCGGGGCGAGCGGTTCGTGTTGTGGCCG CTGGGGATCCGCTCCGCCGGCGCGATGCGCGAAGCCGGGCATCACGCGAT CGCGTTTGTCGGCCAACGTCACTTCGACGATCCGGGCTTGCTCAATCGCT ACTTCGTGCGCGTCGCGCCGCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105238:5..430+

>mRNA_M-pyrifera_M_contig105238.1124.1 ID=mRNA_M-pyrifera_M_contig105238.1124.1|Name=mRNA_M-pyrifera_M_contig105238.1124.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig105238:5..430+ (Macrocystis pyrifera P11B4 male)
TTCCCCGGCGGCGCACTCGAGCCGCGGCCGGGGATCGAGGAATTCGCGGA
ACCGCTGTGGATCCCGCAGGCCCTGCCGCCGACTGAGGACGGCCGATTCG
TAATTCAGCTGTCCGGCGGCGAGCATTATGTGCGCGGCATCCGGGCGCTG
AACGATCCTGCGTCGGTCACACCCTTGCGCGTGCTCCCCTACGCGGTATT
GAAAAATCTCCCGCTGGACGACGGCGCCTCACGCAGCCTGTTCGGCCCCG
ACGGACTCATCGACGAGAGCGCGCGGGGCGAGCGGTTCGTGTTGTGGCCG
CTGGGGATCCGCTCCGCCGGCGCGATGCGCGAAGCCGGGCATCACGCGAT
CGCGTTTGTCGGCCAACGTCACTTCGACGATCCGGGCTTGCTCAATCGCT
ACTTCGTGCGCGTCGCGCCGCCCTGATTCCCCGGCGGCGCACTCGAGCCG
CGGCCGGGGATCGAGGAATTCGCGGAACCGCTGTGGATCCCGCAGGCCCT
GCCGCCGACTGAGGACGGCCGATTCGTAATTCAGCTGTCCGGCGGCGAGC
ATTATGTGCGCGGCATCCGGGCGCTGAACGATCCTGCGTCGGTCACACCC
TTGCGCGTGCTCCCCTACGCGGTATTGAAAAATCTCCCGCTGGACGACGG
CGCCTCACGCAGCCTGTTCGGCCCCGACGGACTCATCGACGAGAGCGCGC
GGGGCGAGCGGTTCGTGTTGTGGCCGCTGGGGATCCGCTCCGCCGGCGCG
ATGCGCGAAGCCGGGCATCACGCGATCGCGTTTGTCGGCCAACGTCACTT
CGACGATCCGGGCTTGCTCAATCGCTACTTCGTGCGCGTCGCGCCGCCCT
GA
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