mRNA_M-pyrifera_M_contig105234.1121.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105234.1121.1
Unique NamemRNA_M-pyrifera_M_contig105234.1121.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A812Q0H4_9DINO (DhkJ protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Q0H4_9DINO)

HSP 1 Score: 187 bits (475), Expect = 9.290e-56
Identity = 94/161 (58.39%), Postives = 115/161 (71.43%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTN 483
            P KQSELFD +   LGV  PED N       ++++I PL +LLAED+  NQ+LA+ +L KWGHTV +A  G +AVE W  Q +DLI+MDVQMPEMDGL ATR IR  E  TS HI IIAMTAHA+ GDRE+CL SGMDGY SKP+R Q+L  ++   FST+
Sbjct:   51 PAKQSELFDSIIVALGVVAPEDENES-KSLDRSSNIGPLNVLLAEDNRANQRLAIALLEKWGHTVTLAENGKEAVELWRRQSFDLIIMDVQMPEMDGLHATRIIRAEEKATSNHIPIIAMTAHALAGDREKCLESGMDGYTSKPLRIQELHQSLSELFSTS 210          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A518C9Q0_9BACT (Signal transduction histidine-protein kinase BarA n=4 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518C9Q0_9BACT)

HSP 1 Score: 191 bits (485), Expect = 1.800e-53
Identity = 93/162 (57.41%), Postives = 118/162 (72.84%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTNS 486
            PVKQSELFD +   LGV+ PED N  +   G    I PL++LLAED+  NQ+LA+ +L KWGH V +A +G +AV+ W   K+DL++MDVQMPEMDGLQATR IR RE    GH+ IIAMTAHA+ GDRE+CL +GMDGY SKP+R Q+L   I  FF+++S
Sbjct:  627 PVKQSELFDAIIVALGVASPEDENE-VKSIGSLPKIRPLKVLLAEDNRANQRLAIALLEKWGHDVTLAESGKQAVDHWERDKFDLVVMDVQMPEMDGLQATRIIRQREQERGGHVPIIAMTAHALAGDREKCLDAGMDGYTSKPLRIQELHQAIAQFFASDS 787          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A1I3F110_9PLAN (PAS domain S-box-containing protein n=2 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3F110_9PLAN)

HSP 1 Score: 187 bits (476), Expect = 3.680e-52
Identity = 96/164 (58.54%), Postives = 117/164 (71.34%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNR-PIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTNSG 489
            PVKQSELFD +   LGV+ PED +  P  D   A+S   L++LLAED+  NQKLAVG+L KWGH V +A TG +A+  W    +DLI+MDVQMPEMDGLQATR+IR  E    GH  IIAMTAHAMTGDRE+CL+SGMDGY++KP+R  +L   I  FF+  S 
Sbjct:  664 PVKQSELFDAIAEALGVTLPEDAHEAPAHD--DAHSTRSLKVLLAEDNRVNQKLAVGLLEKWGHKVTLAETGYQAIHNWKNGSFDLIVMDVQMPEMDGLQATRKIRELEAELGGHTPIIAMTAHAMTGDREQCLSSGMDGYVAKPLRMHELRAAIASFFAEPSA 825          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: UPI001CCA7C8D (response regulator n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCA7C8D)

HSP 1 Score: 187 bits (474), Expect = 5.820e-52
Identity = 96/164 (58.54%), Postives = 116/164 (70.73%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTNSGE 492
            P KQSELFD +   LGV  PED N       ++++I PL +LLAED+  NQ+LA+ +L KWGHTV +A  G +AVE W  Q +DLI+MDVQMPEMDGL ATR IR  E  T  HI IIAMTAHA+ GDRE+CL SGMDGY SKP+R Q+L  ++   FST SGE
Sbjct:  626 PAKQSELFDSIIVALGVVAPEDENES-KSLDRSSNIGPLNVLLAEDNRANQRLAIALLEKWGHTVTLAENGKEAVELWRRQSFDLIIMDVQMPEMDGLHATRIIRAEEKATGNHIPIIAMTAHALAGDREKCLESGMDGYTSKPLRIQELHQSLSELFST-SGE 787          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A2S8GMR6_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GMR6_9BACT)

HSP 1 Score: 186 bits (472), Expect = 1.120e-51
Identity = 93/164 (56.71%), Postives = 115/164 (70.12%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTNSGE 492
            PVKQSELFD +   LGV  PE     +       SI PL+ILLAED+I NQ+LA+ +L KWGH V +A  G +A++ W    YDL++MDVQMPEMDGL+ATR IRN E    GHI I+AMTAHA+ GDRE+CLA+GMDGY SKP+R  DL + I  FF++ S E
Sbjct:  628 PVKQSELFDAIVVALGVELPES-EWHLQALEDRESIRPLKILLAEDNIANQRLAIALLEKWGHEVTLAVNGQEALDTWRADTYDLVVMDVQMPEMDGLEATRRIRNIEKIRGGHIPIVAMTAHALAGDREKCLAAGMDGYTSKPLRIDDLYEAIAQFFTSGSNE 790          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A1G2ZR40_9BACT (Histidine kinase n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2ZR40_9BACT)

HSP 1 Score: 184 bits (467), Expect = 7.860e-51
Identity = 89/163 (54.60%), Postives = 114/163 (69.94%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTNSG 489
            P+KQSELFD +   LG++ PED +       +A    PLR+LLAEDS+ NQKL VG+L K GH V VAN G +A+ AW +Q +DL+LMDVQMPE+DGL+AT  IR RE  T GH+ I+AMTAHAM GDR+ CL +GMD Y+SKP+R + L++TI        G
Sbjct: 1139 PIKQSELFDAIVMALGIASPEDEDTRTAVVRQAERTGPLRVLLAEDSLVNQKLVVGLLEKEGHQVVVANQGREAIAAWESQPFDLVLMDVQMPEVDGLEATAAIRAREQQTGGHVPIVAMTAHAMKGDRQRCLDAGMDEYVSKPIRVRHLLETIEAVLGVRPG 1301          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A2S8F8V4_9BACT (Hybrid sensor histidine kinase/response regulator n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8F8V4_9BACT)

HSP 1 Score: 183 bits (465), Expect = 1.030e-50
Identity = 93/160 (58.13%), Postives = 116/160 (72.50%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDG--NRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFF 474
            PVKQSELFD +   LGV  PE    +R ++D  K   I PL+ILLAED++ NQ+LA+ +L KWGH+V +A  G + VE W    +DL++MDVQMPEMDGL+ATR IRN E    GHI I+AMTAHA+TGDRE+CL +GMDGY SKP+R  +L DTI  FF
Sbjct:  628 PVKQSELFDAIVVALGVEIPEHEAHDRHLEDHEK---IRPLKILLAEDNLANQRLAIALLQKWGHSVTLAVNGKEGVETWRNGAFDLVIMDVQMPEMDGLEATRRIRNLERIRGGHIPIVAMTAHALTGDREKCLEAGMDGYTSKPLRIHELYDTIAGFF 784          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: UPI0019C61868 (Response regulator n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019C61868)

HSP 1 Score: 177 bits (450), Expect = 6.560e-50
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLI 453
            PVKQSELFD +   LG  E ED     D+   A+   PLRILLAEDS+ NQKLAVG+L + GH + VAN G +A+ A    K+D+ILMDVQMPE+DGL ATR+IR RE  T  HI IIAMTAHA+ GDRE CLASGMD Y+SKP+R++ L+
Sbjct:  280 PVKQSELFDAIVAALGGEEREDAGSVHDEEAPASR--PLRILLAEDSLVNQKLAVGLLERHGHELTVANNGREAINALGRGKFDIILMDVQMPELDGLAATRQIREREQSTGRHIPIIAMTAHALKGDRERCLASGMDEYVSKPIRERQLL 428          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A368KY65_9BACT (Response regulator n=3 Tax=Blastopirellula TaxID=265487 RepID=A0A368KY65_9BACT)

HSP 1 Score: 179 bits (453), Expect = 4.660e-49
Identity = 90/160 (56.25%), Postives = 112/160 (70.00%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRP--IDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFF 474
            PVKQSELFD +   LGV  PE       + D  K   + PL+ILLAED++ NQ+LA+ +L KWGH+V +A  G  AVE W    +DL++MD+QMPEMDGL+ATR IRN E    GHI I+AMTAHA+ GDRE+CL +GMDGY SKP+R  +L DTI  FF
Sbjct:  639 PVKQSELFDAIVVALGVELPESETHDSHLKDHEK---LRPLKILLAEDNLANQRLAIALLEKWGHSVTLAVNGKLAVETWRNDTFDLVIMDIQMPEMDGLEATRRIRNLERIRGGHIPIVAMTAHALAGDREKCLEAGMDGYTSKPLRIHELYDTIAGFF 795          
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Match: A0A1G3ALW1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_16_64_12 TaxID=1801971 RepID=A0A1G3ALW1_9BACT)

HSP 1 Score: 178 bits (451), Expect = 1.040e-48
Identity = 91/164 (55.49%), Postives = 113/164 (68.90%), Query Frame = 1
Query:    1 PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPNQKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQATREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDLIDTIVPFFSTNSGE 492
            P+KQSELFD +   LG++ PEDG      A +   I PLR+LLAEDS+ NQKL VG+L K+GH V V N G +A+ A  +Q +DL+LMDVQMPEMDGL+AT  IR +E  T GH+ IIAMTAHAM GDRE CL +GMD YI+KP+R   + +TI     T   E
Sbjct:  751 PIKQSELFDAIVMALGIAGPEDGAVEAIAAEQPRRIRPLRVLLAEDSLVNQKLTVGLLEKYGHRVVVVNHGREAICALESQDFDLVLMDVQMPEMDGLEATAVIRAKEKRTGGHVPIIAMTAHAMKGDRERCLEAGMDEYIAKPIRASLVFNTIEAVLGTPVAE 914          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105234.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812Q0H4_9DINO9.290e-5658.39DhkJ protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A518C9Q0_9BACT1.800e-5357.41Signal transduction histidine-protein kinase BarA ... [more]
A0A1I3F110_9PLAN3.680e-5258.54PAS domain S-box-containing protein n=2 Tax=Planct... [more]
UPI001CCA7C8D5.820e-5258.54response regulator n=1 Tax=Bremerella volcania Tax... [more]
A0A2S8GMR6_9BACT1.120e-5156.71Hybrid sensor histidine kinase/response regulator ... [more]
A0A1G2ZR40_9BACT7.860e-5154.60Histidine kinase n=1 Tax=Planctomycetes bacterium ... [more]
A0A2S8F8V4_9BACT1.030e-5058.13Hybrid sensor histidine kinase/response regulator ... [more]
UPI0019C618686.560e-5060.26Response regulator n=1 Tax=Pirellulaceae bacterium... [more]
A0A368KY65_9BACT4.660e-4956.25Response regulator n=3 Tax=Blastopirellula TaxID=2... [more]
A0A1G3ALW1_9BACT1.040e-4855.49Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105234contigM-pyrifera_M_contig105234:124..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score169.1
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog314278.NB231_06785
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoQ Sensor
EggNOG OGs1NRP8@1224,COG0642@1,COG0642@2,COG2205@2
COG Functional cat.T
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.3419397-CDS-M-pyrifera_M_contig105234:123..6181622815560.3419397-CDS-M-pyrifera_M_contig105234:123..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105234 124..618 -
1692277464.1268637-CDS-M-pyrifera_M_contig105234:123..6181692277464.1268637-CDS-M-pyrifera_M_contig105234:123..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105234 124..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105234.1121.1prot_M-pyrifera_M_contig105234.1121.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105234 124..618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105234.1121.1

>prot_M-pyrifera_M_contig105234.1121.1 ID=prot_M-pyrifera_M_contig105234.1121.1|Name=mRNA_M-pyrifera_M_contig105234.1121.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
PVKQSELFDVLFRVLGVSEPEDGNRPIDDAGKANSIAPLRILLAEDSIPN
QKLAVGVLNKWGHTVDVANTGLKAVEAWATQKYDLILMDVQMPEMDGLQA
TREIRNRETGTSGHITIIAMTAHAMTGDREECLASGMDGYISKPVRKQDL
IDTIVPFFSTNSGE*
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mRNA from alignment at M-pyrifera_M_contig105234:124..618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105234.1121.1 ID=mRNA_M-pyrifera_M_contig105234.1121.1|Name=mRNA_M-pyrifera_M_contig105234.1121.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig105234:124..618- (Macrocystis pyrifera P11B4 male)
CCGGTGAAGCAGTCGGAGCTTTTTGATGTCCTCTTCCGTGTCCTCGGAGT CTCAGAACCTGAAGACGGCAATCGCCCAATTGATGATGCAGGAAAAGCGA ATTCAATCGCGCCACTTCGTATCCTGTTGGCCGAGGACAGCATCCCCAAC CAGAAACTCGCAGTAGGCGTGCTCAATAAATGGGGTCACACAGTTGATGT CGCTAACACCGGACTGAAAGCTGTCGAAGCCTGGGCGACACAAAAGTACG ACCTCATCTTGATGGACGTACAAATGCCAGAGATGGACGGACTCCAGGCA ACTCGGGAAATCCGCAACCGTGAGACAGGCACGAGTGGACACATCACAAT CATCGCGATGACAGCACACGCCATGACGGGCGATCGCGAAGAATGCCTGG CGTCTGGAATGGACGGCTACATCTCCAAGCCTGTCCGCAAGCAAGATCTC ATCGACACAATCGTGCCCTTCTTCTCGACCAACAGCGGAGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105234:124..618-

>mRNA_M-pyrifera_M_contig105234.1121.1 ID=mRNA_M-pyrifera_M_contig105234.1121.1|Name=mRNA_M-pyrifera_M_contig105234.1121.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig105234:124..618- (Macrocystis pyrifera P11B4 male)
CCGGTGAAGCAGTCGGAGCTTTTTGATGTCCTCTTCCGTGTCCTCGGAGT
CTCAGAACCTGAAGACGGCAATCGCCCAATTGATGATGCAGGAAAAGCGA
ATTCAATCGCGCCACTTCGTATCCTGTTGGCCGAGGACAGCATCCCCAAC
CAGAAACTCGCAGTAGGCGTGCTCAATAAATGGGGTCACACAGTTGATGT
CGCTAACACCGGACTGAAAGCTGTCGAAGCCTGGGCGACACAAAAGTACG
ACCTCATCTTGATGGACGTACAAATGCCAGAGATGGACGGACTCCAGGCA
ACTCGGGAAATCCGCAACCGTGAGACAGGCACGAGTGGACACATCACAAT
CATCGCGATGACAGCACACGCCATGACGGGCGATCGCGAAGAATGCCTGG
CGTCTGGAATGGACGGCTACATCTCCAAGCCTGTCCGCAAGCAAGATCTC
ATCGACACAATCGTGCCCTTCTTCTCGACCAACAGCGGAGAATGACCGGT
GAAGCAGTCGGAGCTTTTTGATGTCCTCTTCCGTGTCCTCGGAGTCTCAG
AACCTGAAGACGGCAATCGCCCAATTGATGATGCAGGAAAAGCGAATTCA
ATCGCGCCACTTCGTATCCTGTTGGCCGAGGACAGCATCCCCAACCAGAA
ACTCGCAGTAGGCGTGCTCAATAAATGGGGTCACACAGTTGATGTCGCTA
ACACCGGACTGAAAGCTGTCGAAGCCTGGGCGACACAAAAGTACGACCTC
ATCTTGATGGACGTACAAATGCCAGAGATGGACGGACTCCAGGCAACTCG
GGAAATCCGCAACCGTGAGACAGGCACGAGTGGACACATCACAATCATCG
CGATGACAGCACACGCCATGACGGGCGATCGCGAAGAATGCCTGGCGTCT
GGAATGGACGGCTACATCTCCAAGCCTGTCCGCAAGCAAGATCTCATCGA
CACAATCGTGCCCTTCTTCTCGACCAACAGCGGAGAATGA
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