mRNA_M-pyrifera_M_contig105209.1118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105209.1118.1
Unique NamemRNA_M-pyrifera_M_contig105209.1118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig105209.1118.1 vs. uniprot
Match: A0A7W0KJ47_9ACTN (Restriction endonuclease n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W0KJ47_9ACTN)

HSP 1 Score: 65.9 bits (159), Expect = 2.590e-11
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   16 MSLTDAAEQVLRGHSPGAPMHYRAITERGIDLGLIEPGGPTPEA 147
            +SL D AE VLR HS GAPMHYR +TE G+  GLI PGGPTPEA
Sbjct:    4 LSLADKAEDVLRRHSKGAPMHYRRLTEIGLVEGLIVPGGPTPEA 47
[Close]
BLAST of mRNA_M-pyrifera_M_contig105209.1118.1 vs. uniprot
Match: A0A353C2E9_9FIRM (Restriction endonuclease n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A353C2E9_9FIRM)

HSP 1 Score: 53.1 bits (126), Expect = 7.820e-7
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 TDTMAMSLTDAAEQVLRGHSPGAPMHYRAITERGIDLGLIEPGGPTPE 144
            T    +S TDAAE VL  +    PMHY+ ITE+ I+LGLI   G TP+
Sbjct:   96 TSVKTLSFTDAAEHVLEKYGKKQPMHYKTITEKAIELGLIATAGQTPD 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig105209.1118.1 vs. uniprot
Match: A0A1V5PLE8_9CHLR (Mrr restriction system protein n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5PLE8_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 9.670e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   16 MSLTDAAEQVLRGHSPGAPMHYRAITERGIDLGLIEPGGPTPEA 147
            +S T AAE+VL  ++   PMHYR ITE+ ++LGL+   G TPEA
Sbjct:  103 LSFTSAAEKVLSEYANKQPMHYRVITEKILELGLVNTQGQTPEA 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig105209.1118.1 vs. uniprot
Match: A0A1J5AAU0_9CHLR (Restriction endonuclease n=1 Tax=Anaerolineae bacterium CG2_30_64_16 TaxID=1805005 RepID=A0A1J5AAU0_9CHLR)

HSP 1 Score: 49.7 bits (117), Expect = 1.180e-5
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   13 AMSLTDAAEQVLRGHSPGAPMHYRAITERGIDLGLIEPGGPTPEA 147
            + S TDAAE VL       P+HYRAITE+ + LGL+   G TPEA
Sbjct:   15 SFSFTDAAEAVLEQFGHKQPVHYRAITEKALTLGLVNTKGLTPEA 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig105209.1118.1 vs. uniprot
Match: A0A7C5MJH2_9BACT (Restriction endonuclease n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5MJH2_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 2.480e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   16 MSLTDAAEQVLRGHSPGAPMHYRAITERGIDLGLIEPGGPTPEA 147
            +S TD+AE+VL       PMHYRAITE+ ++L L+   G TPEA
Sbjct:   98 LSFTDSAEKVLEEFGNKQPMHYRAITEKAMELQLLATEGKTPEA 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105209.1118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7W0KJ47_9ACTN2.590e-1170.45Restriction endonuclease n=1 Tax=Geodermatophilace... [more]
A0A353C2E9_9FIRM7.820e-750.00Restriction endonuclease n=1 Tax=Firmicutes bacter... [more]
A0A1V5PLE8_9CHLR9.670e-652.27Mrr restriction system protein n=1 Tax=Chloroflexi... [more]
A0A1J5AAU0_9CHLR1.180e-553.33Restriction endonuclease n=1 Tax=Anaerolineae bact... [more]
A0A7C5MJH2_9BACT2.480e-552.27Restriction endonuclease n=1 Tax=Acidobacteria bac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105209contigM-pyrifera_M_contig105209:3..149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.2113283-CDS-M-pyrifera_M_contig105209:2..1401622815560.2113283-CDS-M-pyrifera_M_contig105209:2..140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105209 3..140 -
1692277464.0666902-CDS-M-pyrifera_M_contig105209:2..1401692277464.0666902-CDS-M-pyrifera_M_contig105209:2..140Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105209 3..140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.2274628-UTR-M-pyrifera_M_contig105209:140..1491622815560.2274628-UTR-M-pyrifera_M_contig105209:140..149Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105209 141..149 -
1692277464.0803423-UTR-M-pyrifera_M_contig105209:140..1491692277464.0803423-UTR-M-pyrifera_M_contig105209:140..149Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105209 141..149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105209.1118.1prot_M-pyrifera_M_contig105209.1118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105209 3..140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105209.1118.1

>prot_M-pyrifera_M_contig105209.1118.1 ID=prot_M-pyrifera_M_contig105209.1118.1|Name=mRNA_M-pyrifera_M_contig105209.1118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MAMSLTDAAEQVLRGHSPGAPMHYRAITERGIDLGLIEPGGPTPEA
back to top

mRNA from alignment at M-pyrifera_M_contig105209:3..149-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105209.1118.1 ID=mRNA_M-pyrifera_M_contig105209.1118.1|Name=mRNA_M-pyrifera_M_contig105209.1118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig105209:3..149- (Macrocystis pyrifera P11B4 male)
ACAGACACGATGGCGATGTCACTCACTGATGCGGCGGAGCAGGTGTTGCG
TGGTCACTCGCCGGGCGCGCCGATGCACTATCGGGCCATCACCGAACGCG
GCATCGATCTGGGTCTCATCGAGCCGGGCGGCCCGACCCCGGAAGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105209:3..149-

>mRNA_M-pyrifera_M_contig105209.1118.1 ID=mRNA_M-pyrifera_M_contig105209.1118.1|Name=mRNA_M-pyrifera_M_contig105209.1118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig105209:3..149- (Macrocystis pyrifera P11B4 male)
ATGGCGATGTCACTCACTGATGCGGCGGAGCAGGTGTTGCGTGGTCACTC
GCCGGGCGCGCCGATGCACTATCGGGCCATCACCGAACGCGGCATCGATC
TGGGTCTCATCGAGCCGGGCGGCCCGACCCCGGAAGCGATGGCGATGTCA
CTCACTGATGCGGCGGAGCAGGTGTTGCGTGGTCACTCGCCGGGCGCGCC
GATGCACTATCGGGCCATCACCGAACGCGGCATCGATCTGGGTCTCATCG
AGCCGGGCGGCCCGACCCCGGAAGCG
back to top