mRNA_M-pyrifera_M_contig105131.1109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105131.1109.1
Unique NamemRNA_M-pyrifera_M_contig105131.1109.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A7S2KTK1_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KTK1_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 2.920e-22
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRG 231
            +++KTLTGR + F+FEP  T  +VK ALQEKEGI V+QIRLI+ GKQM D   L++  VK G T+HMVL LRG
Sbjct:   27 IFIKTLTGRKTNFNFEPDNTVRQVKEALQEKEGIQVEQIRLIYSGKQMSDECTLQDYNVKPGSTVHMVLQLRG 99
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: C5LWI5_PERM5 (Ubiquitin 1, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LWI5_PERM5)

HSP 1 Score: 89.7 bits (221), Expect = 6.480e-22
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRGG 234
            +++KTLTGR S F+FEP  T   VK ALQE+EGI V+QIRLI+ GKQM D   L +  VK G T+HMVL LRGG
Sbjct:    3 IFIKTLTGRKSNFNFEPDNTVRHVKEALQEREGIQVEQIRLIYSGKQMSDDCKLCDYNVKPGSTIHMVLQLRGG 76
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A482SQA4_9ARCH (Ubiquitin n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQA4_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 1.310e-21
Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRGG 234
            +++KTLTGR  +F FE   T   VK ALQEKEGI V QIRLIF GKQ+ D   L+E  V  GDT+HMVL LRGG
Sbjct:    3 IFIKTLTGRKQQFTFENDATLMAVKQALQEKEGIQVDQIRLIFSGKQLSDEKTLQEQNVNPGDTIHMVLQLRGG 76
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A1C3L273_PLAMA (Ubiquitin-like protein nedd8 homologue, putative n=1 Tax=Plasmodium malariae TaxID=5858 RepID=A0A1C3L273_PLAMA)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-21
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRGGR 237
            + VKTLTG+   F+FEPS+T +++K+A++E+EGID KQIRLI+ GKQM D   L +  V  G T+HM+L LRGG+
Sbjct:    3 ILVKTLTGKRQSFNFEPSSTVYQIKMAIEEREGIDAKQIRLIYSGKQMHDEMKLSDYKVVPGSTIHMILQLRGGK 77
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A813I2G9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I2G9_POLGL)

HSP 1 Score: 89.0 bits (219), Expect = 1.860e-21
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRG 231
            +++KTLTGR + F+FEP  T   VK ALQEKEGI V+QIRLI+ GKQM D   L +  VK G T+HMVL LRG
Sbjct:   18 IFIKTLTGRKTNFNFEPDNTVRHVKEALQEKEGIQVEQIRLIYSGKQMSDECTLGDYNVKPGSTVHMVLQLRG 90
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A0G4F771_VITBC (Ubiquitin-like domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F771_VITBC)

HSP 1 Score: 88.6 bits (218), Expect = 1.910e-21
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRGG 234
            + +KTLTGR   F+FEP  T  +VK ALQEKEGI + QIRLIF GKQ+ D   L + GVK G+T+HMVL LRGG
Sbjct:    3 ILIKTLTGRKQNFNFEPDNTILQVKQALQEKEGIMIDQIRLIFGGKQLSDELKLSDYGVKPGNTIHMVLQLRGG 76
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A7S2HES0_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2HES0_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 2.210e-21
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRG 231
            +++KTLTGR + F+FEP  T   VK ALQEKEGI V+QIRLI+ GKQM D   L +  VK G T+HMVL LRG
Sbjct:   37 IFIKTLTGRKTNFNFEPDNTVRHVKEALQEKEGIQVEQIRLIYSGKQMSDECTLADYSVKPGSTVHMVLQLRG 109
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BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A125YX02_TOXGV (Ubiquitin family protein n=16 Tax=Sarcocystidae TaxID=5809 RepID=A0A125YX02_TOXGV)

HSP 1 Score: 87.8 bits (216), Expect = 3.740e-21
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRGG 234
            + +KTLTGR   F+FEP  T   VK ALQEKEGIDVKQIRLI+ GKQM D   L +  V  G T+HMVL LRGG
Sbjct:    3 ILIKTLTGRKQSFNFEPDNTVLHVKQALQEKEGIDVKQIRLIYSGKQMSDELKLSDYKVVPGCTIHMVLQLRGG 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: A0A7S3MCR3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCR3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.450e-21
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 GAVLVYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRG 231
            G + +++KTLTGR + F+FE   T   VK ALQEKEGI V+QIRLI+ GKQM D   L++  VK G T+HMVL LRG
Sbjct:   33 GQMQIFIKTLTGRKTNFNFEMDNTVRHVKEALQEKEGIQVEQIRLIYSGKQMSDECTLQDYNVKPGSTVHMVLQLRG 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Match: B6AF28_CRYMR (Ubiquitin-like protein, putative n=7 Tax=Cryptosporidium TaxID=5806 RepID=B6AF28_CRYMR)

HSP 1 Score: 87.4 bits (215), Expect = 5.610e-21
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   13 VYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGKQMKDATALEENGVKGGDTLHMVLALRGG 234
            + VKTLTG+   F+FEP  T  +VK ALQEKEGIDVKQIRLI+ GKQM D   L +  V  G T+HMVL LRGG
Sbjct:    3 ILVKTLTGKKQNFNFEPDNTVLQVKQALQEKEGIDVKQIRLIYSGKQMSDDLRLLDYKVTAGCTIHMVLQLRGG 76
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105131.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2KTK1_9DINO2.920e-2260.27Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
C5LWI5_PERM56.480e-2260.81Ubiquitin 1, putative n=2 Tax=Perkinsus marinus (s... [more]
A0A482SQA4_9ARCH1.310e-2160.81Ubiquitin n=1 Tax=archaeon TaxID=1906665 RepID=A0A... [more]
A0A1C3L273_PLAMA1.340e-2154.67Ubiquitin-like protein nedd8 homologue, putative n... [more]
A0A813I2G9_POLGL1.860e-2160.27Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A0G4F771_VITBC1.910e-2160.81Ubiquitin-like domain-containing protein n=1 Tax=V... [more]
A0A7S2HES0_9DINO2.210e-2160.27Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A125YX02_TOXGV3.740e-2162.16Ubiquitin family protein n=16 Tax=Sarcocystidae Ta... [more]
A0A7S3MCR3_9STRA4.450e-2157.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
B6AF28_CRYMR5.610e-2162.16Ubiquitin-like protein, putative n=7 Tax=Cryptospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105131contigM-pyrifera_M_contig105131:23..265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score87.4
Seed ortholog evalue3.3e-15
Seed eggNOG ortholog29176.XP_003880453.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009987,GO:0016579,GO:0019538,GO:0019725,GO:0019899,GO:0019941,GO:0030003,GO:0030163,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032502,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0046916,GO:0048856,GO:0048878,GO:0050801,GO:0051603,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0098771,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Ubiquitin-like domain
EggNOG OGs3YHSK@5794,3YPIJ@5796,3YVRW@5809,COG5272@1,KOG0001@2759
COG Functional cat.O
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.641204-CDS-M-pyrifera_M_contig105131:22..2651622815559.641204-CDS-M-pyrifera_M_contig105131:22..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105131 23..265 -
1692277463.776971-CDS-M-pyrifera_M_contig105131:22..2651692277463.776971-CDS-M-pyrifera_M_contig105131:22..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105131 23..265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105131.1109.1prot_M-pyrifera_M_contig105131.1109.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105131 23..265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105131.1109.1

>prot_M-pyrifera_M_contig105131.1109.1 ID=prot_M-pyrifera_M_contig105131.1109.1|Name=mRNA_M-pyrifera_M_contig105131.1109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
GAVLVYVKTLTGRTSEFDFEPSTTTHEVKVALQEKEGIDVKQIRLIFKGK
QMKDATALEENGVKGGDTLHMVLALRGGRE*
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mRNA from alignment at M-pyrifera_M_contig105131:23..265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105131.1109.1 ID=mRNA_M-pyrifera_M_contig105131.1109.1|Name=mRNA_M-pyrifera_M_contig105131.1109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig105131:23..265- (Macrocystis pyrifera P11B4 male)
GGTGCAGTGTTGGTGTATGTGAAGACGTTGACTGGTCGCACCAGTGAGTT
CGACTTTGAACCTTCGACGACGACGCATGAGGTGAAGGTGGCGTTGCAAG
AAAAGGAAGGGATCGACGTGAAGCAGATTCGATTGATTTTCAAGGGCAAG
CAGATGAAAGATGCTACTGCTTTGGAGGAGAATGGAGTCAAAGGTGGAGA
TACCCTCCACATGGTTCTGGCACTGCGAGGAGGGCGGGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105131:23..265-

>mRNA_M-pyrifera_M_contig105131.1109.1 ID=mRNA_M-pyrifera_M_contig105131.1109.1|Name=mRNA_M-pyrifera_M_contig105131.1109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig105131:23..265- (Macrocystis pyrifera P11B4 male)
GGTGCAGTGTTGGTGTATGTGAAGACGTTGACTGGTCGCACCAGTGAGTT
CGACTTTGAACCTTCGACGACGACGCATGAGGTGAAGGTGGCGTTGCAAG
AAAAGGAAGGGATCGACGTGAAGCAGATTCGATTGATTTTCAAGGGCAAG
CAGATGAAAGATGCTACTGCTTTGGAGGAGAATGGAGTCAAAGGTGGAGA
TACCCTCCACATGGTTCTGGCACTGCGAGGAGGGCGGGAATAAGGTGCAG
TGTTGGTGTATGTGAAGACGTTGACTGGTCGCACCAGTGAGTTCGACTTT
GAACCTTCGACGACGACGCATGAGGTGAAGGTGGCGTTGCAAGAAAAGGA
AGGGATCGACGTGAAGCAGATTCGATTGATTTTCAAGGGCAAGCAGATGA
AAGATGCTACTGCTTTGGAGGAGAATGGAGTCAAAGGTGGAGATACCCTC
CACATGGTTCTGGCACTGCGAGGAGGGCGGGAATAA
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