mRNA_M-pyrifera_M_contig104729.1015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104729.1015.1
Unique NamemRNA_M-pyrifera_M_contig104729.1015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104729.1015.1 vs. uniprot
Match: A0A7X6P267_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6P267_9ACTN)

HSP 1 Score: 48.1 bits (113), Expect = 9.470e-5
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 MSHIVIHEDSNNGTHYAEFDDVQEAVAHLEQLVNEDSGANARLFALEPVEFAVKSYVKVEINSADTDPPAPVSA 222
            MSH+VI +  +    Y +F+ V+E+VA +E L NE +  +A++F L+ V+F  + Y +V++       P P  A
Sbjct:    1 MSHMVIFQTPDGDQGYNQFETVEESVAFVESLRNEQNVLSAKIFKLDEVKFEFRPYFRVQLAQLGAGDPPPAYA 74
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104729.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X6P267_9ACTN9.470e-533.78Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104729contigM-pyrifera_M_contig104729:255..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.0608358-CDS-M-pyrifera_M_contig104729:254..5001622815555.0608358-CDS-M-pyrifera_M_contig104729:254..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104729 255..500 +
1692277461.7174048-CDS-M-pyrifera_M_contig104729:254..5001692277461.7174048-CDS-M-pyrifera_M_contig104729:254..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104729 255..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104729.1015.1prot_M-pyrifera_M_contig104729.1015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104729 255..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104729.1015.1

>prot_M-pyrifera_M_contig104729.1015.1 ID=prot_M-pyrifera_M_contig104729.1015.1|Name=mRNA_M-pyrifera_M_contig104729.1015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MSHIVIHEDSNNGTHYAEFDDVQEAVAHLEQLVNEDSGANARLFALEPVE
FAVKSYVKVEINSADTDPPAPVSAAIEAPPVE
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mRNA from alignment at M-pyrifera_M_contig104729:255..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104729.1015.1 ID=mRNA_M-pyrifera_M_contig104729.1015.1|Name=mRNA_M-pyrifera_M_contig104729.1015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig104729:255..500+ (Macrocystis pyrifera P11B4 male)
ATGAGCCACATCGTGATCCACGAAGACAGCAACAACGGTACGCACTACGC
CGAGTTCGACGATGTGCAGGAAGCTGTTGCCCATCTCGAACAGCTCGTGA
ACGAGGACAGTGGCGCGAACGCCCGCCTCTTCGCCCTCGAGCCCGTCGAG
TTCGCCGTGAAGTCCTACGTGAAGGTCGAGATCAACTCGGCCGACACCGA
TCCGCCGGCCCCCGTGTCGGCCGCGATCGAAGCGCCGCCGGTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104729:255..500+

>mRNA_M-pyrifera_M_contig104729.1015.1 ID=mRNA_M-pyrifera_M_contig104729.1015.1|Name=mRNA_M-pyrifera_M_contig104729.1015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig104729:255..500+ (Macrocystis pyrifera P11B4 male)
ATGAGCCACATCGTGATCCACGAAGACAGCAACAACGGTACGCACTACGC
CGAGTTCGACGATGTGCAGGAAGCTGTTGCCCATCTCGAACAGCTCGTGA
ACGAGGACAGTGGCGCGAACGCCCGCCTCTTCGCCCTCGAGCCCGTCGAG
TTCGCCGTGAAGTCCTACGTGAAGGTCGAGATCAACTCGGCCGACACCGA
TCCGCCGGCCCCCGTGTCGGCCGCGATCGAAGCGCCGCCGGTCGAGATGA
GCCACATCGTGATCCACGAAGACAGCAACAACGGTACGCACTACGCCGAG
TTCGACGATGTGCAGGAAGCTGTTGCCCATCTCGAACAGCTCGTGAACGA
GGACAGTGGCGCGAACGCCCGCCTCTTCGCCCTCGAGCCCGTCGAGTTCG
CCGTGAAGTCCTACGTGAAGGTCGAGATCAACTCGGCCGACACCGATCCG
CCGGCCCCCGTGTCGGCCGCGATCGAAGCGCCGCCGGTCGAG
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