mRNA_M-pyrifera_M_contig104688.1007.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104688.1007.1
Unique NamemRNA_M-pyrifera_M_contig104688.1007.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: A0A7S4IGE8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IGE8_9EUKA)

HSP 1 Score: 151 bits (382), Expect = 1.170e-42
Identity = 64/84 (76.19%), Postives = 77/84 (91.67%), Query Frame = 1
Query:   22 VKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKR 273
            +K EKC+VC KTVYAM++M ADG+VFHK CMKC HC+K+L LGN+AAL+GKYYCKPHFKQLFQSKGNYS+GFGE+KPTAKW+ +
Sbjct:  238 IKSEKCSVCGKTVYAMDKMVADGVVFHKTCMKCTHCSKTLGLGNFAALNGKYYCKPHFKQLFQSKGNYSDGFGEEKPTAKWEAK 321          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: L8HBY3_ACACA (LIM domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HBY3_ACACA)

HSP 1 Score: 127 bits (319), Expect = 1.330e-34
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   34 KCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDK 270
            KCA+C KTVYAMERM ADG+ FHK CMKC  CN +L LGNYA+L+GKYYCK HFKQLF+ KGNY +GFG ++P  KW K
Sbjct:    6 KCAICAKTVYAMERMDADGMSFHKTCMKCEECNCTLKLGNYASLAGKYYCKTHFKQLFKLKGNYDQGFGREQPKMKWQK 84          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: A0A7S4I5N3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5N3_9EUKA)

HSP 1 Score: 125 bits (314), Expect = 1.800e-34
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   31 EKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKRASSPTFPSL 300
            +KC VC   VY  E+++A+G VFHK C +C HC K LSLGNYA+LSG YYCKPHFK LF+ KGNYSEGFG DKPTAKW + +S     S+
Sbjct:    9 DKCLVCGGRVYFNEKVSAEGKVFHKTCFRCTHCKKVLSLGNYASLSGSYYCKPHFKSLFKLKGNYSEGFGLDKPTAKWQEGSSDSVDASV 98          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: L8HG53_ACACA (SAM domain (Sterile alpha motif) domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG53_ACACA)

HSP 1 Score: 133 bits (335), Expect = 3.770e-34
Identity = 55/87 (63.22%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   22 VKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKRASS 282
            +  EKCA C KTVY  ER++A+G++FH  C +C HCN  L LG+YA+L GKY+CKPHFKQLF++KGNYSEGFG++KPTAKW  R++S
Sbjct: 1055 INNEKCAACSKTVYFSERLSAEGVIFHVACFRCNHCNGKLKLGSYASLEGKYFCKPHFKQLFKAKGNYSEGFGKEKPTAKWLSRSTS 1141          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: A7RF11_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RF11_NEMVE)

HSP 1 Score: 121 bits (304), Expect = 8.190e-34
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   28 REKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKRASSPTFPS 297
            +EKC VC KTVY MER+AAD  V+HK C KC  CN +L LGNYAAL GK YCKPHFKQLF+ KGNY EGFG ++   +W  +++  T  S
Sbjct:   19 QEKCEVCNKTVYPMERLAADKKVYHKFCFKCNECNNTLRLGNYAALQGKVYCKPHFKQLFKVKGNYDEGFGREQHKTQWSAKSNGETSES 108          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: V9LDL7_CALMI (LIM domain-containing protein 2-like protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9LDL7_CALMI)

HSP 1 Score: 119 bits (298), Expect = 4.710e-33
Identity = 54/91 (59.34%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 MSFSPGNVKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKR 273
            MSF P  +K E CA C KTVY MER+ AD L+FH  C  C HCN  LSLG+YAAL G++YCKPHF+QLF+SKGNY EGFG  +    W ++
Sbjct:    1 MSFLPPQMK-ESCASCNKTVYPMERLVADKLIFHTSCFCCKHCNAKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWQQK 90          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: A9UWT8_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UWT8_MONBE)

HSP 1 Score: 118 bits (295), Expect = 8.240e-33
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   37 CAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKR 273
            CAVC+K VYAME++ ADG ++HK C +C  CNK++SLG +AAL+G  YCKPHFKQLF+SKGNY EGFG ++   KW +R
Sbjct:    1 CAVCDKAVYAMEKLEADGKIYHKNCFRCSVCNKAVSLGGFAALAGALYCKPHFKQLFKSKGNYDEGFGREQHKTKWIQR 79          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: A0A401RLB5_CHIPU (LIM zinc-binding domain-containing protein n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401RLB5_CHIPU)

HSP 1 Score: 118 bits (295), Expect = 1.310e-32
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   22 VKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKRAS 279
            V +E CA C KTVY MER+ AD LVFH  C  C HCN  L LG+YAAL G++YCKPHF+QLF+SKGNY EGFG  +   +W ++A+
Sbjct:    6 VSKELCASCNKTVYPMERLVADKLVFHTSCFCCKHCNAKLRLGSYAALQGEFYCKPHFQQLFKSKGNYDEGFGRKQHKERWQQKAA 91          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: A0A7J6BEL9_AMEME (LIM zinc-binding domain-containing protein n=7 Tax=Siluroidei TaxID=1489793 RepID=A0A7J6BEL9_AMEME)

HSP 1 Score: 117 bits (294), Expect = 3.160e-32
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 MSFSPGNVKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKW-DKRASSPT 288
            +SF P   +RE CA CEKTVY MER+ A+ L+FH  C  C HCN  LSLG YAAL G++YCKPHF+QLF+SKGNY EGFG  +    W  K A S T
Sbjct:   18 LSFKP---QRETCASCEKTVYPMERLVANNLIFHTTCFCCKHCNTKLSLGTYAALQGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWASKDAESIT 111          
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Match: G1PIM5_MYOLU (LIM domain containing 2 n=3 Tax=Myotis TaxID=9434 RepID=G1PIM5_MYOLU)

HSP 1 Score: 118 bits (295), Expect = 3.360e-32
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    4 SFSPGNVKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLGNYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKRASSPT 288
            SFS     +E CA C+KTVY MER+ AD L+FH  C  C HC+  LSLGNYAAL G++YCKPHF+QLF+SKGNY EGFG  +    W  +   P+
Sbjct:   30 SFSLRAQVKETCASCQKTVYPMERLVADKLIFHNSCFCCKHCHSKLSLGNYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104688.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IGE8_9EUKA1.170e-4276.19Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8HBY3_ACACA1.330e-3469.62LIM domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A7S4I5N3_9EUKA1.800e-3462.22Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8HG53_ACACA3.770e-3463.22SAM domain (Sterile alpha motif) domain containing... [more]
A7RF11_NEMVE8.190e-3460.00Predicted protein n=1 Tax=Nematostella vectensis T... [more]
V9LDL7_CALMI4.710e-3359.34LIM domain-containing protein 2-like protein n=1 T... [more]
A9UWT8_MONBE8.240e-3362.03Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
A0A401RLB5_CHIPU1.310e-3259.30LIM zinc-binding domain-containing protein n=6 Tax... [more]
A0A7J6BEL9_AMEME3.160e-3258.76LIM zinc-binding domain-containing protein n=7 Tax... [more]
G1PIM5_MYOLU3.360e-3255.79LIM domain containing 2 n=3 Tax=Myotis TaxID=9434 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104688contigM-pyrifera_M_contig104688:196..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score122.1
Seed ortholog evalue1.5e-25
Seed eggNOG ortholog45351.EDO50008
Preferred nameLIMD2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.metal ion binding
EggNOG OGs3A33T@33154,3BR4D@33208,COG5069@1,KOG1700@2759
COG Functional cat.TZ
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.7014134-CDS-M-pyrifera_M_contig104688:195..4981622815554.7014134-CDS-M-pyrifera_M_contig104688:195..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104688 196..498 +
1692277461.5927532-CDS-M-pyrifera_M_contig104688:195..4981692277461.5927532-CDS-M-pyrifera_M_contig104688:195..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104688 196..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104688.1007.1prot_M-pyrifera_M_contig104688.1007.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104688 196..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104688.1007.1

>prot_M-pyrifera_M_contig104688.1007.1 ID=prot_M-pyrifera_M_contig104688.1007.1|Name=mRNA_M-pyrifera_M_contig104688.1007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MSFSPGNVKREKCAVCEKTVYAMERMAADGLVFHKGCMKCCHCNKSLSLG
NYAALSGKYYCKPHFKQLFQSKGNYSEGFGEDKPTAKWDKRASSPTFPSL
*
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mRNA from alignment at M-pyrifera_M_contig104688:196..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104688.1007.1 ID=mRNA_M-pyrifera_M_contig104688.1007.1|Name=mRNA_M-pyrifera_M_contig104688.1007.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig104688:196..498+ (Macrocystis pyrifera P11B4 male)
ATGTCCTTCAGCCCCGGCAACGTGAAGCGCGAGAAGTGCGCAGTCTGCGA GAAGACGGTCTACGCCATGGAACGCATGGCGGCAGACGGCCTCGTCTTCC ACAAGGGCTGCATGAAGTGCTGCCACTGCAACAAGAGCCTCTCGCTCGGC AACTACGCCGCTCTGTCCGGCAAGTACTACTGCAAGCCCCACTTCAAGCA GCTCTTCCAGTCCAAGGGCAACTATTCGGAGGGCTTCGGCGAGGACAAGC CCACCGCCAAGTGGGATAAGCGTGCGTCCTCTCCCACATTTCCTTCCCTG TAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104688:196..498+

>mRNA_M-pyrifera_M_contig104688.1007.1 ID=mRNA_M-pyrifera_M_contig104688.1007.1|Name=mRNA_M-pyrifera_M_contig104688.1007.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig104688:196..498+ (Macrocystis pyrifera P11B4 male)
ATGTCCTTCAGCCCCGGCAACGTGAAGCGCGAGAAGTGCGCAGTCTGCGA
GAAGACGGTCTACGCCATGGAACGCATGGCGGCAGACGGCCTCGTCTTCC
ACAAGGGCTGCATGAAGTGCTGCCACTGCAACAAGAGCCTCTCGCTCGGC
AACTACGCCGCTCTGTCCGGCAAGTACTACTGCAAGCCCCACTTCAAGCA
GCTCTTCCAGTCCAAGGGCAACTATTCGGAGGGCTTCGGCGAGGACAAGC
CCACCGCCAAGTGGGATAAGCGTGCGTCCTCTCCCACATTTCCTTCCCTG
TAGATGTCCTTCAGCCCCGGCAACGTGAAGCGCGAGAAGTGCGCAGTCTG
CGAGAAGACGGTCTACGCCATGGAACGCATGGCGGCAGACGGCCTCGTCT
TCCACAAGGGCTGCATGAAGTGCTGCCACTGCAACAAGAGCCTCTCGCTC
GGCAACTACGCCGCTCTGTCCGGCAAGTACTACTGCAAGCCCCACTTCAA
GCAGCTCTTCCAGTCCAAGGGCAACTATTCGGAGGGCTTCGGCGAGGACA
AGCCCACCGCCAAGTGGGATAAGCGTGCGTCCTCTCCCACATTTCCTTCC
CTGTAG
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