mRNA_M-pyrifera_M_contig104583.990.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104583.990.1
Unique NamemRNA_M-pyrifera_M_contig104583.990.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A0H2RSF0_9AGAM (Ribosomal RNA-processing protein 43 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2RSF0_9AGAM)

HSP 1 Score: 73.2 bits (178), Expect = 2.900e-13
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            +++A VFQ+LHP T+L RFV  G RPDGR LG  R  ++N   +S+A GSA+ ++G+T ++  +K  +++P   AP  G++
Sbjct:   12 SLQATVFQRLHPRTYLSRFVEEGFRPDGRELGDWRDISVNVGSISTANGSALVRMGDTTIVCGVKAEIAEPDLDAPEEGFI 92          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A8H6T7D5_9AGAR (Semialdhyde-dh domain-containing protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6T7D5_9AGAR)

HSP 1 Score: 70.5 bits (171), Expect = 5.660e-12
Identity = 34/82 (41.46%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   49 SAMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            SA++A VFQ+LHP+T+L RFVA   RPDGR     R  ++N   +S+A GSA+ +LG T ++  +K  +++P   +P +G++
Sbjct:  355 SALKAAVFQRLHPHTYLERFVAEKYRPDGRQFDAWRDVSVNVGSISTADGSALVRLGETTIVCGVKAEIAEPELDSPEAGFI 436          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A8H5BTL6_9AGAR (Ribosomal RNA-processing protein 43 n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BTL6_9AGAR)

HSP 1 Score: 69.3 bits (168), Expect = 8.020e-12
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            A++A +FQ+LHP  +L RF+A G RPDGR L   R  ++N   +S+A GSA+ +LGNT V+  +K  +++P   A   G++
Sbjct:   21 ALQASIFQRLHPRAYLERFLAEGFRPDGRALDAWREVSVNTGSISTADGSALVRLGNTTVVCGVKAEIAEPELDAGVRGFL 101          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A4S8MLB8_DENBC (Ribosomal RNA-processing protein 43 n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MLB8_DENBC)

HSP 1 Score: 69.3 bits (168), Expect = 1.000e-11
Identity = 33/81 (40.74%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            A++A +FQ+LHP T+L RF+A G RPDGR L   R   LN   +S+A GSA+ +LG T ++  +K  +++P       G++
Sbjct:   16 ALKAAIFQRLHPRTYLERFLAEGVRPDGRDLDEWRSIELNVGSISTANGSALVKLGQTTIVCGVKAEIAEPELDCEEEGFL 96          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A5M3MMN8_CONPW (Ribosomal RNA-processing protein 43 n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MMN8_CONPW)

HSP 1 Score: 68.6 bits (166), Expect = 1.530e-11
Identity = 29/81 (35.80%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            A++A +FQ+LHP ++L R+++   RPDGRG    R  ++N   +S+A GSA+ ++G+TR++  +K  +++P    P  G++
Sbjct:   18 AIKAQIFQRLHPRSYLERYISEDVRPDGRGFEDWREVSVNVGSISTAHGSALVRMGDTRIVCGVKAEIAEPELDKPHEGFL 98          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A4Y7TEB4_9AGAR (Ribosomal RNA-processing protein 43 n=2 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TEB4_9AGAR)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-11
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            A++A +FQ+LHP  +L RF+A G RPDGR L   R  ++N   +S+A GSA+ +LGNT V+  +K  +++P   A   G++
Sbjct:   22 ALQASIFQRLHPRAYLERFLAEGFRPDGRTLEGWRDVSVNTGSISTADGSALVRLGNTTVVCGVKAEIAEPELDAGNRGFL 102          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: UPI0020097556 (exosome complex component RRP43-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020097556)

HSP 1 Score: 63.9 bits (154), Expect = 3.960e-11
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   49 SAMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWVG 297
            S ME   F++L P  F  R +    RPDGR LG  R  +L+   V+SA GSA+A++G T +LAAIK  V  PT +AP  G +G
Sbjct:   12 SEMELDAFRRLFPLRFHERHLLESIRPDGRPLGRARDTSLSLGAVASANGSALAKIGCTTMLAAIKLEVMTPTVEAPDEGCIG 94          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A8H6WS40_9AGAR (Ribosomal RNA-processing protein 43 n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6WS40_9AGAR)

HSP 1 Score: 67.0 bits (162), Expect = 4.850e-11
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   49 SAMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            +A++A VFQ+LHP T+L RF+A   RPDGR     R  ++N   +S+A GSA+ +LG T ++  IK  +++P   A  +G++
Sbjct:    4 AALKAAVFQRLHPRTYLERFIAESYRPDGRQFDGWRDVSVNVGSISTADGSALVRLGETAIVCGIKAEIAEPELDASEAGFL 85          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: R7T1S1_DICSQ (Ribosomal RNA-processing protein 43 n=4 Tax=Dichomitus squalens TaxID=114155 RepID=R7T1S1_DICSQ)

HSP 1 Score: 67.0 bits (162), Expect = 5.690e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            A++A  FQ+LHP T+L RF+A   RPDGR     R  ++N   +S+A GSA+ +LG+T V+  +K  +++P    P+ G++
Sbjct:   19 ALKALTFQRLHPKTYLERFLAENVRPDGRDFDEWRDISVNVGSISTADGSALVRLGSTTVVCGVKAEIAEPELDKPKDGFL 99          
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Match: A0A2G8SV33_9APHY (Ribosomal RNA-processing protein 43 n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SV33_9APHY)

HSP 1 Score: 66.6 bits (161), Expect = 8.260e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   52 AMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGHTRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWV 294
            A++A  FQ+LHP T+L RF+A   RPDGR     R  ++N   +S+A GSA+ +LG+T V+  +K  +++P    P+ G++
Sbjct:   19 ALKALTFQRLHPKTYLERFLAENVRPDGREFDEWRDISVNVGSISTADGSALVKLGSTTVVCGVKAEIAEPELDKPKEGFL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104583.990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H2RSF0_9AGAM2.900e-1341.98Ribosomal RNA-processing protein 43 n=1 Tax=Schizo... [more]
A0A8H6T7D5_9AGAR5.660e-1241.46Semialdhyde-dh domain-containing protein n=1 Tax=M... [more]
A0A8H5BTL6_9AGAR8.020e-1241.98Ribosomal RNA-processing protein 43 n=2 Tax=Tulose... [more]
A0A4S8MLB8_DENBC1.000e-1140.74Ribosomal RNA-processing protein 43 n=1 Tax=Dendro... [more]
A0A5M3MMN8_CONPW1.530e-1135.80Ribosomal RNA-processing protein 43 n=1 Tax=Coniop... [more]
A0A4Y7TEB4_9AGAR1.580e-1141.98Ribosomal RNA-processing protein 43 n=2 Tax=Coprin... [more]
UPI00200975563.960e-1145.78exosome complex component RRP43-like n=1 Tax=Salvi... [more]
A0A8H6WS40_9AGAR4.850e-1140.24Ribosomal RNA-processing protein 43 n=1 Tax=Mycena... [more]
R7T1S1_DICSQ5.690e-1139.51Ribosomal RNA-processing protein 43 n=4 Tax=Dichom... [more]
A0A2G8SV33_9APHY8.260e-1139.51Ribosomal RNA-processing protein 43 n=1 Tax=Ganode... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104583contigM-pyrifera_M_contig104583:44..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog202698.XP_007382540.1
KEGG koko:K12586
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3' exoribonuclease family, domain 1
EggNOG OGs224XF@155619,38CRS@33154,3H0IT@355688,3NW1S@4751,3V0T3@5204,COG2123@1,KOG1613@2759
COG Functional cat.J
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.6264813-CDS-M-pyrifera_M_contig104583:43..3551622815553.6264813-CDS-M-pyrifera_M_contig104583:43..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104583 44..355 -
1692277461.1009915-CDS-M-pyrifera_M_contig104583:43..3551692277461.1009915-CDS-M-pyrifera_M_contig104583:43..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104583 44..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104583.990.1prot_M-pyrifera_M_contig104583.990.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104583 44..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104583.990.1

>prot_M-pyrifera_M_contig104583.990.1 ID=prot_M-pyrifera_M_contig104583.990.1|Name=mRNA_M-pyrifera_M_contig104583.990.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
PPISSPPTRNLLLRPPSAMEAPVFQKLHPNTFLRRFVAAGARPDGRGLGH
TRRATLNASIVSSAAGSAVAQLGNTRVLAAIKPLVSQPTPQAPRSGWVGA
CTR*
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mRNA from alignment at M-pyrifera_M_contig104583:44..355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104583.990.1 ID=mRNA_M-pyrifera_M_contig104583.990.1|Name=mRNA_M-pyrifera_M_contig104583.990.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig104583:44..355- (Macrocystis pyrifera P11B4 male)
CCTCCCATCTCCTCCCCGCCAACTCGCAACCTCCTCCTTCGCCCCCCCTC CGCCATGGAAGCCCCCGTCTTCCAGAAACTACACCCCAACACCTTCTTGC GCCGATTCGTCGCCGCTGGAGCCAGACCCGACGGCCGGGGACTGGGCCAC ACGCGTCGCGCCACCCTGAACGCCTCCATCGTCTCCTCCGCCGCCGGCTC AGCCGTCGCACAGCTGGGCAACACCCGCGTGCTGGCCGCGATTAAGCCCC TCGTGTCTCAGCCAACCCCGCAGGCCCCTCGGAGCGGATGGGTCGGTGCG TGTACGCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104583:44..355-

>mRNA_M-pyrifera_M_contig104583.990.1 ID=mRNA_M-pyrifera_M_contig104583.990.1|Name=mRNA_M-pyrifera_M_contig104583.990.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig104583:44..355- (Macrocystis pyrifera P11B4 male)
CCTCCCATCTCCTCCCCGCCAACTCGCAACCTCCTCCTTCGCCCCCCCTC
CGCCATGGAAGCCCCCGTCTTCCAGAAACTACACCCCAACACCTTCTTGC
GCCGATTCGTCGCCGCTGGAGCCAGACCCGACGGCCGGGGACTGGGCCAC
ACGCGTCGCGCCACCCTGAACGCCTCCATCGTCTCCTCCGCCGCCGGCTC
AGCCGTCGCACAGCTGGGCAACACCCGCGTGCTGGCCGCGATTAAGCCCC
TCGTGTCTCAGCCAACCCCGCAGGCCCCTCGGAGCGGATGGGTCGGTGCG
TGTACGCGCTGACCTCCCATCTCCTCCCCGCCAACTCGCAACCTCCTCCT
TCGCCCCCCCTCCGCCATGGAAGCCCCCGTCTTCCAGAAACTACACCCCA
ACACCTTCTTGCGCCGATTCGTCGCCGCTGGAGCCAGACCCGACGGCCGG
GGACTGGGCCACACGCGTCGCGCCACCCTGAACGCCTCCATCGTCTCCTC
CGCCGCCGGCTCAGCCGTCGCACAGCTGGGCAACACCCGCGTGCTGGCCG
CGATTAAGCCCCTCGTGTCTCAGCCAACCCCGCAGGCCCCTCGGAGCGGA
TGGGTCGGTGCGTGTACGCGCTGA
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