mRNA_M-pyrifera_M_contig104581.989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104581.989.1
Unique NamemRNA_M-pyrifera_M_contig104581.989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A812X8W8_9DINO (Proteasome subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812X8W8_9DINO)

HSP 1 Score: 107 bits (268), Expect = 7.460e-27
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   73 PMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            P+KHTT+PIVTG+SV+AIKY  GVMMAADTL SYGGLARF D+RRL+  GKS LIG SG+ SDFQ+I+ LLD
Sbjct:   20 PVKHTTQPIVTGTSVIAIKYKDGVMMAADTLGSYGGLARFTDLRRLKVVGKSTLIGCSGEYSDFQYILSLLD 91          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A7S3HPE8_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPE8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.690e-25
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   46 VHGAAAYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            +H A +   P  HTT+PIVTG++V+ IKY GGVM+AADTLASYG LAR+KD+RRL+  G++ LIG SG++SDFQ I+++LD
Sbjct:   10 MHAALSPHAPTTHTTQPIVTGTTVIGIKYNGGVMLAADTLASYGSLARYKDVRRLKQVGENTLIGASGEISDFQTIMEMLD 90          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A316YJN5_9BASI (Proteasome subunit beta n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YJN5_9BASI)

HSP 1 Score: 102 bits (254), Expect = 1.210e-24
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 1
Query:   28 VALAPQVHGAAAYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGF-GKSALIGGSGDMSDFQHIVDLLD 288
            ++  P  H + A+DD  KHT +PIVTG+S+L I++ GGVM+A+DTLASYG LARF D+RRL    G ++++G SGDMSDFQHI  L++
Sbjct:   17 ISAGPSSHSSDAFDDARKHTQQPIVTGTSILGIRFKGGVMLASDTLASYGSLARFMDVRRLISVEGANSIVGASGDMSDFQHIQHLIE 104          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: U5H299_USTV1 (Proteasome subunit beta n=4 Tax=Microbotryum TaxID=34416 RepID=U5H299_USTV1)

HSP 1 Score: 102 bits (253), Expect = 2.190e-24
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   61 AYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            A+   ++HT +PIVTG+SVLAIK+ GGVMMAAD LASYG LARFKD++RL   G+S LIG SGDM+D+Q ++ LL+
Sbjct:   37 AFSQGVQHTQQPIVTGTSVLAIKFNGGVMMAADNLASYGSLARFKDIKRLHAVGESTLIGASGDMADYQQVIKLLE 112          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A0C9WVE4_9AGAR (Proteasome subunit beta n=2 Tax=Laccaria TaxID=29882 RepID=A0A0C9WVE4_9AGAR)

HSP 1 Score: 100 bits (250), Expect = 5.130e-24
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   28 VALAPQVHGAAAYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            +A  PQ +   A+   ++HT +PIVTG+SVLAIKY  G+MMAAD LASYG LARFKD++RL   G + +IG  GDMSDFQ+I ++LD
Sbjct:   24 IAQRPQNNPKDAFSAGVQHTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDIQRLHAVGNNTMIGAGGDMSDFQYIQNMLD 110          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: D8LRR1_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR1_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.090e-23
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   49 HGAAAYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            H  AA D   +HT++PIVTG+SVL IKY  GVM+AADTLASYG LAR+K++ RL+  G+  LIG SG+ SDFQHI++ L+
Sbjct:   15 HATAAMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERLKPVGECTLIGASGEYSDFQHIMETLE 94          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: M5FSI8_DACPD (Proteasome subunit beta n=2 Tax=Dacrymycetaceae TaxID=5254 RepID=M5FSI8_DACPD)

HSP 1 Score: 99.8 bits (247), Expect = 1.450e-23
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   61 AYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            A+ D ++HT +PIVTG+SVLAIKY  G+MMAAD LASYG LARFKD+ RL   G+  LIG  GDMSDFQ++  LLD
Sbjct:   36 AFTDGVQHTQQPIVTGTSVLAIKYKDGIMMAADCLASYGSLARFKDISRLHSVGQYTLIGAGGDMSDFQYLQHLLD 111          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A401GVE0_9APHY (Proteasome subunit beta n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GVE0_9APHY)

HSP 1 Score: 99.8 bits (247), Expect = 1.450e-23
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   61 AYDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            A+ + ++HT +PIVTG+SVLAIKY  GVMMAAD LASYG LARFKD++RL   G S +IG SGD+SDFQ++ +LLD
Sbjct:   34 AFAEGVQHTQQPIVTGTSVLAIKYKDGVMMAADNLASYGSLARFKDIQRLHPVGSSTIIGVSGDLSDFQYLQNLLD 109          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A0D7BD90_9AGAR (Proteasome subunit beta n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BD90_9AGAR)

HSP 1 Score: 99.4 bits (246), Expect = 1.970e-23
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:   64 YDDPMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD 288
            ++D ++HT +PIVTG+SVLAIKYA GVM+AAD LASYG LARFKD++R+   G S ++G SGDMSDFQ++   LD
Sbjct:   34 FEDSVQHTQQPIVTGASVLAIKYANGVMLAADNLASYGSLARFKDVKRVIQVGSSTIVGASGDMSDFQYLQRELD 108          
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Match: A0A482UNQ1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UNQ1_9ARCH)

HSP 1 Score: 96.7 bits (239), Expect = 2.280e-23
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   73 PMKHTTRPIVTGSSVLAIKYAGGVMMAADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLL 285
            P  HTT PIVTG++VLAIKY  GVMMAADTLASYG LAR+KD+RR++  G+  LIG SG+MSDFQ + ++L
Sbjct:   40 PNTHTTSPIVTGTTVLAIKYNEGVMMAADTLASYGSLARYKDVRRIQKVGEHCLIGASGEMSDFQSLQEML 110          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104581.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812X8W8_9DINO7.460e-2773.61Proteasome subunit beta n=1 Tax=Symbiodinium sp. K... [more]
A0A7S3HPE8_9STRA4.690e-2560.49Proteasome subunit beta n=1 Tax=Spumella elongata ... [more]
A0A316YJN5_9BASI1.210e-2455.68Proteasome subunit beta n=1 Tax=Acaromyces ingoldi... [more]
U5H299_USTV12.190e-2463.16Proteasome subunit beta n=4 Tax=Microbotryum TaxID... [more]
A0A0C9WVE4_9AGAR5.130e-2457.47Proteasome subunit beta n=2 Tax=Laccaria TaxID=298... [more]
D8LRR1_ECTSI1.090e-2360.00Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
M5FSI8_DACPD1.450e-2364.47Proteasome subunit beta n=2 Tax=Dacrymycetaceae Ta... [more]
A0A401GVE0_9APHY1.450e-2364.47Proteasome subunit beta n=1 Tax=Sparassis crispa T... [more]
A0A0D7BD90_9AGAR1.970e-2362.67Proteasome subunit beta n=1 Tax=Cylindrobasidium t... [more]
A0A482UNQ1_9ARCH2.280e-2366.20Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104581contigM-pyrifera_M_contig104581:195..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue3.4e-19
Seed eggNOG ortholog2880.D8LRR1
Preferred namePSMB4
KEGG koko:K02736,ko:K05542,ko:K18740
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000502,GO:0001530,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007098,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009056,GO:0009057,GO:0009628,GO:0009651,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0016787,GO:0019538,GO:0019774,GO:0019941,GO:0022402,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031023,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0036211,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080134,GO:0090068,GO:0097367,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsKOG0185@1,KOG0185@2759
EC1.3.1.88,3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03016,ko03019,ko03051
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.5924528-CDS-M-pyrifera_M_contig104581:194..4821622815553.5924528-CDS-M-pyrifera_M_contig104581:194..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104581 195..482 +
1692277461.0871696-CDS-M-pyrifera_M_contig104581:194..4821692277461.0871696-CDS-M-pyrifera_M_contig104581:194..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104581 195..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104581.989.1prot_M-pyrifera_M_contig104581.989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104581 195..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104581.989.1

>prot_M-pyrifera_M_contig104581.989.1 ID=prot_M-pyrifera_M_contig104581.989.1|Name=mRNA_M-pyrifera_M_contig104581.989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MSSAEVDSGVALAPQVHGAAAYDDPMKHTTRPIVTGSSVLAIKYAGGVMM
AADTLASYGGLARFKDMRRLRGFGKSALIGGSGDMSDFQHIVDLLD
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mRNA from alignment at M-pyrifera_M_contig104581:195..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104581.989.1 ID=mRNA_M-pyrifera_M_contig104581.989.1|Name=mRNA_M-pyrifera_M_contig104581.989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig104581:195..482+ (Macrocystis pyrifera P11B4 male)
ATGAGCTCGGCAGAAGTTGACTCGGGGGTAGCACTGGCGCCGCAGGTGCA CGGCGCAGCGGCGTACGACGACCCGATGAAGCACACGACGCGGCCCATCG TGACCGGCTCGTCCGTGCTGGCGATCAAGTACGCGGGCGGTGTGATGATG GCGGCAGACACTCTGGCGTCGTACGGTGGGCTGGCGCGGTTCAAGGACAT GCGTCGCCTTCGCGGATTCGGCAAGTCCGCCCTCATCGGAGGCAGCGGCG ATATGAGCGATTTCCAGCACATTGTGGACCTGCTGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104581:195..482+

>mRNA_M-pyrifera_M_contig104581.989.1 ID=mRNA_M-pyrifera_M_contig104581.989.1|Name=mRNA_M-pyrifera_M_contig104581.989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig104581:195..482+ (Macrocystis pyrifera P11B4 male)
ATGAGCTCGGCAGAAGTTGACTCGGGGGTAGCACTGGCGCCGCAGGTGCA
CGGCGCAGCGGCGTACGACGACCCGATGAAGCACACGACGCGGCCCATCG
TGACCGGCTCGTCCGTGCTGGCGATCAAGTACGCGGGCGGTGTGATGATG
GCGGCAGACACTCTGGCGTCGTACGGTGGGCTGGCGCGGTTCAAGGACAT
GCGTCGCCTTCGCGGATTCGGCAAGTCCGCCCTCATCGGAGGCAGCGGCG
ATATGAGCGATTTCCAGCACATTGTGGACCTGCTGGATATGAGCTCGGCA
GAAGTTGACTCGGGGGTAGCACTGGCGCCGCAGGTGCACGGCGCAGCGGC
GTACGACGACCCGATGAAGCACACGACGCGGCCCATCGTGACCGGCTCGT
CCGTGCTGGCGATCAAGTACGCGGGCGGTGTGATGATGGCGGCAGACACT
CTGGCGTCGTACGGTGGGCTGGCGCGGTTCAAGGACATGCGTCGCCTTCG
CGGATTCGGCAAGTCCGCCCTCATCGGAGGCAGCGGCGATATGAGCGATT
TCCAGCACATTGTGGACCTGCTGGAT
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