mRNA_M-pyrifera_M_contig104562.981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig104562.981.1
Unique Name	mRNA_M-pyrifera_M_contig104562.981.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A7S4M424_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M424_9EUKA)

HSP 1 Score: 142 bits (358), Expect = 1.360e-40
Identity = 95/126 (75.40%), Postives = 105/126 (83.33%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSVGSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTEATK 378
            DGDGKI++ EIG VMRSLGQMPT+EE+  IV  VGS +VDFP+F  VM +NMK PAS EEIKEAFRVFDK+G+GFVS SELRHVMTNLG    XXXXXXXXXXXXXXXXXXX Y EFVKMM +A K
Sbjct:   60 DGDGKIAAKEIGIVMRSLGQMPTEEELQTIVEGVGSDSVDFPKFCKVMKENMKEPASAEEIKEAFRVFDKDGEGFVSCSELRHVMTNLGXXXXXXXXXXXXXXXXXXXXXXXKYEEFVKMMMDAAK 185

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A0A9WVE0_LYGHE (Calmodulin n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0A9WVE0_LYGHE)

HSP 1 Score: 135 bits (339), Expect = 3.550e-38
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMM 363
            DGDG I++ E+GTVMRSLGQ PT+ E+  +++ V   GS TVDFPEFLT+M++ M+   SEEEIKEAFRVFDK+G+GF+SA+ELRHVMTNLGEKLT XXXXXXXXXXXXXXXXX  Y EFVKMM
Sbjct:   23 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTVDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDXXXXXXXXXXXXXXXXXINYEEFVKMM 146

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A1V9X3G0_9ACAR (Calmodulin n=2 Tax=Dermanyssoidea TaxID=41438 RepID=A0A1V9X3G0_9ACAR)

HSP 1 Score: 134 bits (338), Expect = 5.040e-38
Identity = 88/125 (70.40%), Postives = 105/125 (84.00%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMT 366
            DGDG I++ E+GTVMRSLGQ PT+ E+  +++ V   GS T+DFPEFLT+M++ MK   SEEEI+EAFRVFDK+G+GF+SA+ELRHVMTNLGEKLT XXXXXXXXXXXXXXXXX  Y EFV MMT
Sbjct:   23 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGSGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDXXXXXXXXXXXXXXXXXVNYEEFVTMMT 147

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: G1QQY8_NOMLE (Calmodulin 3 n=2 Tax=Amniota TaxID=32524 RepID=G1QQY8_NOMLE)

HSP 1 Score: 134 bits (337), Expect = 6.730e-38
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMT 366
            DGDG I++ E+GTVMRSLGQ PT+ E+  +++ V   G+ T+DFPEFLT+M++ MK   SEEEI+EAFRVFDKEG+G++SA+ELRHVMTNLGEKLT XXXXXXXXXXX        Y EFV+MMT
Sbjct:   21 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKEGNGYISAAELRHVMTNLGEKLTDXXXXXXXXXXXIDGDGQVNYEEFVQMMT 145

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A7L2N8N5_9PASS (CALMS protein (Fragment) n=6 Tax=Passeriformes TaxID=9126 RepID=A0A7L2N8N5_9PASS)

HSP 1 Score: 134 bits (337), Expect = 7.140e-38
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTE 369
            DGDG++++ E+GTVMRSLGQ PT+ E+ G+V  V   GS  VDFPEFL++M++ M+    EEEI+EAFRVFDK+G+G++SA+ELRHVMTNLGEKLT                    Y EFV+MMTE
Sbjct:   23 DGDGRVTAKELGTVMRSLGQNPTEAELQGMVGEVDADGSGAVDFPEFLSLMARRMRETDGEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNDDGQVNYEEFVRMMTE 148

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A7K4SFU7_COLPI (CALMS protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4SFU7_COLPI)

HSP 1 Score: 133 bits (334), Expect = 1.120e-37
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTE 369
            DGDG I++ E+GTVMRSLGQ PT+ E+  +V  V   GS T+DFPEFL++M++ M+   SEEEI+EAFRVFDK+G+G++SA+ELRHVMTNLGEKLT                    Y EFV+MMTE
Sbjct:    3 DGDGCITTKELGTVMRSLGQNPTEAELQDMVGDVDTDGSGTIDFPEFLSLMARKMRDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADSNNDGQVNYEEFVRMMTE 128

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A091SGZ9_PELCR (Calmodulin, striated muscle (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A091SGZ9_PELCR)

HSP 1 Score: 133 bits (334), Expect = 1.260e-37
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTE 369
            DGDG I++ E+GTVMRSLGQ PT+ E+  +V  V   GS T+DFPEFL++M++ M+   SEEEI+EAFRVFDK+G+G++SA+ELRHVMTNLGEKLT                    Y EFV+MMTE
Sbjct:    7 DGDGCITTKELGTVMRSLGQNPTEAELQDMVGEVDADGSGTIDFPEFLSLMARKMRDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMMTE 132

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A852C1H0_9PICI (CALMS protein (Fragment) n=42 Tax=Neognathae TaxID=8825 RepID=A0A852C1H0_9PICI)

HSP 1 Score: 133 bits (335), Expect = 1.440e-37
Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTE 369
            DGDG I++ E+GTVMRSLGQ PT+ E+ G+V  +   GS TVDFPEFL++M++ M+   SEEEI+EAFRVFDK+G+G++SA+ELRHVMTNLGEKLT                    Y EFV++MTE
Sbjct:   23 DGDGCITTKELGTVMRSLGQNPTEAELQGMVGELDADGSGTVDFPEFLSLMARKMRDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADGNNDGQVNYEEFVRIMTE 148

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A8J1ULM4_OWEFU (Ofus.G151864 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1ULM4_OWEFU)

HSP 1 Score: 132 bits (333), Expect = 1.900e-37
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTEAT 375
            DGDG I++ E+GTVMRSLGQ PT+ E+  ++  V   G+ T+DFPEF+T+M++ MK   SEEEIKEAFRVFDK+G+GF+SA+ELRHVMTN GEKLT                    Y EFVKMM   T
Sbjct:    8 DGDGTITTKELGTVMRSLGQNPTEAELQNMIDKVDADGNGTIDFPEFITMMARKMKDTDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNHGEKLTDEEVDEMIKDADIDGDGQVNYEEFVKMMMSKT 135

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BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Match: A0A8C3M4E1_CHRPC (Calmodulin like 3 n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C3M4E1_CHRPC)

HSP 1 Score: 133 bits (334), Expect = 2.040e-37
Identity = 70/126 (55.56%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSV---GSSTVDFPEFLTVMSKNMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTXXXXXXXXXXXXXXXXXXXXYAEFVKMMTE 369
            DGDG I++ E+GTVMRSLGQ PT+ E+  +V  V   GS T+DFPEFL++M++ M+   SEEEI+EAFRVFDK+G+G++SA+ELRHVMTNLGEKLT                    Y EFV+MMTE
Sbjct:   23 DGDGCITTKELGTVMRSLGQNPTEAELQDMVGEVDVDGSGTIDFPEFLSLMARKMRDSDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMMTE 148

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig104562.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S4M424_9EUKA	1.360e-40	75.40	Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ...	[more]
A0A0A9WVE0_LYGHE	3.550e-38	71.77	Calmodulin n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0...	[more]
A0A1V9X3G0_9ACAR	5.040e-38	70.40	Calmodulin n=2 Tax=Dermanyssoidea TaxID=41438 RepI...	[more]
G1QQY8_NOMLE	6.730e-38	64.80	Calmodulin 3 n=2 Tax=Amniota TaxID=32524 RepID=G1Q...	[more]
A0A7L2N8N5_9PASS	7.140e-38	54.76	CALMS protein (Fragment) n=6 Tax=Passeriformes Tax...	[more]
A0A7K4SFU7_COLPI	1.120e-37	55.56	CALMS protein (Fragment) n=1 Tax=Columbina picui T...	[more]
A0A091SGZ9_PELCR	1.260e-37	55.56	Calmodulin, striated muscle (Fragment) n=5 Tax=Neo...	[more]
A0A852C1H0_9PICI	1.440e-37	55.56	CALMS protein (Fragment) n=42 Tax=Neognathae TaxID...	[more]
A0A8J1ULM4_OWEFU	1.900e-37	54.69	Ofus.G151864 protein (Fragment) n=1 Tax=Owenia fus...	[more]
A0A8C3M4E1_CHRPC	2.040e-37	55.56	Calmodulin like 3 n=4 Tax=Neognathae TaxID=8825 Re...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig104562	contig	M-pyrifera_M_contig104562:258..638 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Mammalia
Seed ortholog score	134.8
Seed ortholog evalue	2.8e-29
Seed eggNOG ortholog	61853.ENSNLEP00000003356
Hectar predicted targeting category	other localisation
EggNOG free text desc.	negative regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGs	38ETU@33154,3BAEQ@33208,3CUJJ@33213,3JBHU@40674,481VF@7711,48WHI@7742,COG5126@1,KOG0027@2759
COG Functional cat.	T
Best tax level	Mammalia
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	381
Cds size	381
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815553.1758668-CDS-M-pyrifera_M_contig104562:257..638	1622815553.1758668-CDS-M-pyrifera_M_contig104562:257..638	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig104562 258..638 -
1692277460.8555446-CDS-M-pyrifera_M_contig104562:257..638	1692277460.8555446-CDS-M-pyrifera_M_contig104562:257..638	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig104562 258..638 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig104562.981.1	prot_M-pyrifera_M_contig104562.981.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig104562 258..638 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig104562:258..638-
coding sequence from alignment at M-pyrifera_M_contig104562:258..638-

protein sequence of mRNA_M-pyrifera_M_contig104562.981.1

>prot_M-pyrifera_M_contig104562.981.1 ID=prot_M-pyrifera_M_contig104562.981.1|Name=mRNA_M-pyrifera_M_contig104562.981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
DGDGKISSSEIGTVMRSLGQMPTQEEVAGIVSSVGSSTVDFPEFLTVMSK
NMKPPASEEEIKEAFRVFDKEGDGFVSASELRHVMTNLGEKLTEDEIDEM
ITEADDDSDGQIKYAEFVKMMTEATK*

mRNA from alignment at M-pyrifera_M_contig104562:258..638-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig104562.981.1 ID=mRNA_M-pyrifera_M_contig104562.981.1|Name=mRNA_M-pyrifera_M_contig104562.981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig104562:258..638- (Macrocystis pyrifera P11B4 male)
GACGGTGATGGCAAGATTTCTTCCAGCGAGATCGGAACCGTCATGCGCTC
CCTCGGCCAGATGCCCACCCAGGAGGAGGTCGCCGGTATCGTCTCCAGCG
TCGGCAGCTCCACCGTGGACTTCCCCGAGTTCCTCACCGTCATGTCCAAG
AACATGAAGCCCCCGGCCTCCGAGGAGGAGATCAAGGAGGCCTTCCGCGT
CTTCGACAAGGAGGGCGACGGATTCGTGTCTGCCTCTGAGCTTCGCCACG
TCATGACCAACCTCGGAGAGAAGCTCACCGAGGACGAGATCGACGAGATG
ATCACCGAGGCTGACGACGACAGCGACGGCCAGATCAAGTACGCCGAGTT
CGTCAAGATGATGACCGAGGCTACCAAGTAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104562:258..638-

>mRNA_M-pyrifera_M_contig104562.981.1 ID=mRNA_M-pyrifera_M_contig104562.981.1|Name=mRNA_M-pyrifera_M_contig104562.981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig104562:258..638- (Macrocystis pyrifera P11B4 male)
GACGGTGATGGCAAGATTTCTTCCAGCGAGATCGGAACCGTCATGCGCTC
CCTCGGCCAGATGCCCACCCAGGAGGAGGTCGCCGGTATCGTCTCCAGCG
TCGGCAGCTCCACCGTGGACTTCCCCGAGTTCCTCACCGTCATGTCCAAG
AACATGAAGCCCCCGGCCTCCGAGGAGGAGATCAAGGAGGCCTTCCGCGT
CTTCGACAAGGAGGGCGACGGATTCGTGTCTGCCTCTGAGCTTCGCCACG
TCATGACCAACCTCGGAGAGAAGCTCACCGAGGACGAGATCGACGAGATG
ATCACCGAGGCTGACGACGACAGCGACGGCCAGATCAAGTACGCCGAGTT
CGTCAAGATGATGACCGAGGCTACCAAGTAGGACGGTGATGGCAAGATTT
CTTCCAGCGAGATCGGAACCGTCATGCGCTCCCTCGGCCAGATGCCCACC
CAGGAGGAGGTCGCCGGTATCGTCTCCAGCGTCGGCAGCTCCACCGTGGA
CTTCCCCGAGTTCCTCACCGTCATGTCCAAGAACATGAAGCCCCCGGCCT
CCGAGGAGGAGATCAAGGAGGCCTTCCGCGTCTTCGACAAGGAGGGCGAC
GGATTCGTGTCTGCCTCTGAGCTTCGCCACGTCATGACCAACCTCGGAGA
GAAGCTCACCGAGGACGAGATCGACGAGATGATCACCGAGGCTGACGACG
ACAGCGACGGCCAGATCAAGTACGCCGAGTTCGTCAAGATGATGACCGAG
GCTACCAAGTAG