mRNA_M-pyrifera_M_contig104561.979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104561.979.1
Unique NamemRNA_M-pyrifera_M_contig104561.979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A3C1KKW7_9GAMM ((2Fe-2S)-binding protein n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KKW7_9GAMM)

HSP 1 Score: 183 bits (464), Expect = 2.050e-54
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WTMAPDWGS++++GPDMWTED+G RPSLVLREDIEMSEAIQ  LD   ++GIPLSYQEARIYHAHQS DAAIGRE IPADLQVEAVLNEPWWHPNEPRL
Sbjct:  313 WTMAPDWGSTAENGPDMWTEDAGARPSLVLREDIEMSEAIQETLDATHATGIPLSYQEARIYHAHQSADAAIGRERIPADLQVEAVLNEPWWHPNEPRL 411
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A3C1NV84_9GAMM ((2Fe-2S)-binding protein (Fragment) n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3C1NV84_9GAMM)

HSP 1 Score: 156 bits (394), Expect = 1.160e-45
Identity = 72/99 (72.73%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WTMAPDWGS++D+GPDMWTED+G RPSLVLREDIEMSEAIQ  LD   ++GIPLSYQE+RIY+ HQS DA+IG  N+P  L+V+AVL E W HPNEPRL
Sbjct:  153 WTMAPDWGSTADNGPDMWTEDAGARPSLVLREDIEMSEAIQETLDATHATGIPLSYQESRIYYWHQSADASIGAANLPPALRVQAVLGESWLHPNEPRL 251
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A2E7C6W0_9GAMM ((2Fe-2S)-binding protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C6W0_9GAMM)

HSP 1 Score: 151 bits (381), Expect = 3.750e-42
Identity = 70/100 (70.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRLR 300
            WTMAPDWG+ +D GPDMWTED G RPS VLREDI+MSEAIQA LD   + GIPLSYQEARIYH HQS DA +G   IP  L+V+ VL + W HPNEPRLR
Sbjct:  302 WTMAPDWGADTDRGPDMWTEDDGARPSRVLREDIDMSEAIQAALDPRSNRGIPLSYQEARIYHWHQSADAVVGAAQIPEGLRVQPVLEDAWLHPNEPRLR 401
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: B8KS34_9GAMM (Rieske (2Fe-2S) domain protein n=1 Tax=Luminiphilus syltensis NOR5-1B TaxID=565045 RepID=B8KS34_9GAMM)

HSP 1 Score: 129 bits (325), Expect = 7.420e-34
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WT+APDW +  +SGPDMWTE++G +PSLVLREDIEMSEAIQ  +      GIPLSYQEARIY+ HQ  DA IG +NI   L+V  V+   W HPNEPRL
Sbjct:  314 WTLAPDWRNHRESGPDMWTENNGEKPSLVLREDIEMSEAIQKAMADTGERGIPLSYQEARIYYWHQWADALIGLDNIEPALRVADVIGNEWVHPNEPRL 412
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A2E3DA61_9GAMM ((2Fe-2S)-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3DA61_9GAMM)

HSP 1 Score: 109 bits (273), Expect = 2.590e-26
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WTMAPDWG +    PD WTE++G   +LVLRED E    IQ  +++    G+PLSYQEARIYH +Q  D  IG ENIP +L+V+ V+ + W +PN+PR+
Sbjct:  317 WTMAPDWGDAP--APDYWTENNGETLNLVLREDTEFGVWIQKSMESHGFRGVPLSYQEARIYHWNQEADRIIGSENIPEELRVQQVMGDEWVYPNDPRI 413
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A2E3QK71_9GAMM ((2Fe-2S)-binding protein n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2E3QK71_9GAMM)

HSP 1 Score: 108 bits (270), Expect = 7.030e-26
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WTMAPDWG +    PD WTE++G   + VLRED E    IQ  +++    G+PLSYQEARIYH +Q  D  IG ENIP +LQV+ V+ E W +PN+PR+
Sbjct:  317 WTMAPDWGDAP--APDYWTENNGECLNKVLREDTEFGVWIQKSMESNGFRGVPLSYQEARIYHWNQEADRVIGPENIPRELQVKQVMGEEWVYPNDPRV 413
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A7C7W8G5_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7W8G5_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 4.770e-25
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WTM PDWG       D WT + G R + VL ED E  EAIQ  +++    G+PLSYQEARIYH +Q  D  IG ENIP +L+VE V+ E W +PN+PR+
Sbjct:  316 WTMVPDWGDG-----DYWTVNDGERLNDVLLEDTEFGEAIQKSMESYGFKGVPLSYQEARIYHWNQQADRVIGAENIPPELRVEQVMGEEWIYPNDPRV 409
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A2E9A9S3_9ALTE ((2Fe-2S)-binding protein n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E9A9S3_9ALTE)

HSP 1 Score: 105 bits (261), Expect = 1.390e-24
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WT+APDWG     GPD WT ++G R   +L ED E    IQ  +++    G+PLSYQEARIYH +Q+ D  IG + IPA+L V  V+ E W HPN+PR+
Sbjct:  319 WTIAPDWGDGE--GPDYWTVNNGERLCDILLEDTEFGTQIQRSMESPGFKGVPLSYQEARIYHWNQNADQMIGLDRIPAELAVRQVIGEEWVHPNDPRV 415
[Close]
BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A2D5FLL2_9GAMM ((2Fe-2S)-binding protein n=2 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A2D5FLL2_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 2.630e-24
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WT+APDWG     GPD WT ++G R   +L ED E    IQ  +++    G+PLSYQEARIYH +Q+ D  IG   IPADL V+ V+ E W +PN+PR+
Sbjct:  319 WTIAPDWGDGE--GPDYWTVNNGERLCDILLEDTEFGTQIQKSMESPGFKGVPLSYQEARIYHWNQNADRMIGLNKIPADLAVQQVIGEEWVYPNDPRV 415
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BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Match: A0A2D4WIX9_9ALTE ((2Fe-2S)-binding protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2D4WIX9_9ALTE)

HSP 1 Score: 104 bits (259), Expect = 2.950e-24
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    1 WTMAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGIPLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRL 297
            WT+APDWG     GPD WT ++G R   +L ED E    IQ  +++    G+PLSYQEARIYH +Q+ D  IG + IP +L V+ V+ E W HPN+PR+
Sbjct:  319 WTIAPDWGDGE--GPDYWTVNNGERLCDILLEDTEFGTQIQRSMESPGFKGVPLSYQEARIYHWNQNADRKIGLDKIPRELAVQQVIGEEWVHPNDPRI 415
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104561.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KKW7_9GAMM2.050e-5484.85(2Fe-2S)-binding protein n=9 Tax=Halieaceae TaxID=... [more]
A0A3C1NV84_9GAMM1.160e-4572.73(2Fe-2S)-binding protein (Fragment) n=1 Tax=Haliea... [more]
A0A2E7C6W0_9GAMM3.750e-4270.00(2Fe-2S)-binding protein n=1 Tax=Haliea sp. TaxID=... [more]
B8KS34_9GAMM7.420e-3462.63Rieske (2Fe-2S) domain protein n=1 Tax=Luminiphilu... [more]
A0A2E3DA61_9GAMM2.590e-2651.52(2Fe-2S)-binding protein n=1 Tax=Gammaproteobacter... [more]
A0A2E3QK71_9GAMM7.030e-2652.53(2Fe-2S)-binding protein n=2 Tax=unclassified Gamm... [more]
A0A7C7W8G5_9GAMM4.770e-2551.52Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2E9A9S3_9ALTE1.390e-2449.49(2Fe-2S)-binding protein n=6 Tax=Gammaproteobacter... [more]
A0A2D5FLL2_9GAMM2.630e-2449.49(2Fe-2S)-binding protein n=2 Tax=Halieaceae bacter... [more]
A0A2D4WIX9_9ALTE2.950e-2448.48(2Fe-2S)-binding protein n=1 Tax=Alteromonadaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104561contigM-pyrifera_M_contig104561:2..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score173.3
Seed ortholog evalue5.6e-41
Seed eggNOG ortholog1121937.AUHJ01000002_gene3541
KEGG rclassRC00087
KEGG koko:K00499
KEGG ReactionR07409
KEGG Pathwayko00260,map00260
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ring hydroxylating alpha subunit (catalytic domain)
EggNOG OGs1N6MJ@1224,1RRDH@1236,4680W@72275,COG4638@1,COG4638@2
EC1.14.15.7
COG Functional cat.P
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size303
Cds size297
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.064561-UTR-M-pyrifera_M_contig104561:1..71622815553.064561-UTR-M-pyrifera_M_contig104561:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104561 2..7 +
1692277460.7977173-UTR-M-pyrifera_M_contig104561:1..71692277460.7977173-UTR-M-pyrifera_M_contig104561:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104561 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.0810313-CDS-M-pyrifera_M_contig104561:7..3041622815553.0810313-CDS-M-pyrifera_M_contig104561:7..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104561 8..304 +
1692277460.8115153-CDS-M-pyrifera_M_contig104561:7..3041692277460.8115153-CDS-M-pyrifera_M_contig104561:7..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104561 8..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104561.979.1prot_M-pyrifera_M_contig104561.979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104561 8..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104561.979.1

>prot_M-pyrifera_M_contig104561.979.1 ID=prot_M-pyrifera_M_contig104561.979.1|Name=mRNA_M-pyrifera_M_contig104561.979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MAPDWGSSSDSGPDMWTEDSGTRPSLVLREDIEMSEAIQAGLDTARSSGI
PLSYQEARIYHAHQSTDAAIGRENIPADLQVEAVLNEPWWHPNEPRLR*
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mRNA from alignment at M-pyrifera_M_contig104561:2..304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104561.979.1 ID=mRNA_M-pyrifera_M_contig104561.979.1|Name=mRNA_M-pyrifera_M_contig104561.979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig104561:2..304+ (Macrocystis pyrifera P11B4 male)
TGGACCATGGCACCGGATTGGGGCTCAAGCTCCGACAGCGGGCCTGATAT
GTGGACAGAAGATTCGGGCACGCGACCCAGCCTCGTGCTGCGCGAGGACA
TCGAGATGTCGGAGGCAATACAGGCGGGCCTGGATACTGCCCGGTCGTCA
GGTATTCCGCTGAGTTATCAGGAGGCACGCATCTACCACGCCCATCAGTC
GACCGATGCGGCCATCGGGCGCGAGAACATTCCGGCAGACCTGCAGGTCG
AAGCCGTTCTGAATGAGCCGTGGTGGCATCCCAATGAACCGCGCCTGAGG
TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104561:2..304+

>mRNA_M-pyrifera_M_contig104561.979.1 ID=mRNA_M-pyrifera_M_contig104561.979.1|Name=mRNA_M-pyrifera_M_contig104561.979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig104561:2..304+ (Macrocystis pyrifera P11B4 male)
ATGGCACCGGATTGGGGCTCAAGCTCCGACAGCGGGCCTGATATGTGGAC
AGAAGATTCGGGCACGCGACCCAGCCTCGTGCTGCGCGAGGACATCGAGA
TGTCGGAGGCAATACAGGCGGGCCTGGATACTGCCCGGTCGTCAGGTATT
CCGCTGAGTTATCAGGAGGCACGCATCTACCACGCCCATCAGTCGACCGA
TGCGGCCATCGGGCGCGAGAACATTCCGGCAGACCTGCAGGTCGAAGCCG
TTCTGAATGAGCCGTGGTGGCATCCCAATGAACCGCGCCTGAGGTAAATG
GCACCGGATTGGGGCTCAAGCTCCGACAGCGGGCCTGATATGTGGACAGA
AGATTCGGGCACGCGACCCAGCCTCGTGCTGCGCGAGGACATCGAGATGT
CGGAGGCAATACAGGCGGGCCTGGATACTGCCCGGTCGTCAGGTATTCCG
CTGAGTTATCAGGAGGCACGCATCTACCACGCCCATCAGTCGACCGATGC
GGCCATCGGGCGCGAGAACATTCCGGCAGACCTGCAGGTCGAAGCCGTTC
TGAATGAGCCGTGGTGGCATCCCAATGAACCGCGCCTGAGGTAA
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