mRNA_M-pyrifera_M_contig104496.971.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104496.971.1
Unique NamemRNA_M-pyrifera_M_contig104496.971.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A3D4UKH5_9BACT (DUF3467 domain-containing protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UKH5_9BACT)

HSP 1 Score: 155 bits (392), Expect = 3.840e-47
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    4 QQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAPPPAEG 306
            QQQQVQLRIDE+KM+STYANTIRTS T DE+IMDFGMNIPMQ PGQ P +VF+VGSRV+MNWAGAKRLA+SLG AIRQYEER GEIDINP      PPA+G
Sbjct:    8 QQQQVQLRIDETKMSSTYANTIRTSNTQDELIMDFGMNIPMQLPGQGPVVVFNVGSRVIMNWAGAKRLALSLGSAIRQYEERFGEIDINP-AGGQQPPAQG 107          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A3M2CYG8_9BACT (DUF3467 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CYG8_9BACT)

HSP 1 Score: 150 bits (379), Expect = 3.350e-45
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    4 QQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINP 273
            QQQQ+QLRIDESKMTSTYANTIRTS T DE++MDFGMNIPMQ P Q PTIVFHVGSRV+MNWAGAKRL MSLG A+RQYEE+ G I++NP
Sbjct:   11 QQQQIQLRIDESKMTSTYANTIRTSNTQDEVVMDFGMNIPMQIPNQPPTIVFHVGSRVIMNWAGAKRLVMSLGNAVRQYEEQFGTIELNP 100          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A7C5WJC8_9BACT (DUF3467 domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5WJC8_9BACT)

HSP 1 Score: 149 bits (375), Expect = 1.320e-44
Identity = 72/99 (72.73%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    4 QQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAPPPA 300
            QQQQ+QLRIDESKMT+TY+NTIRTSTT DE+++DFGMNIPMQ PGQ P ++F+VGSR+VMNWAGAKRLA+SLG  +RQYEERNGEI +  P  A   PA
Sbjct:    7 QQQQIQLRIDESKMTTTYSNTIRTSTTQDEIVLDFGMNIPMQMPGQDPMVIFNVGSRIVMNWAGAKRLAISLGQVVRQYEERNGEIQLQQPAPADQTPA 105          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A3M2BCQ7_9BACT (DUF3467 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BCQ7_9BACT)

HSP 1 Score: 144 bits (364), Expect = 1.060e-42
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 1
Query:   10 QQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAPP 294
            QQ+QLRIDESKM S+YANTIRTSTT+DE+++DFG+NIPMQ P Q PT++F VGSRV+MNWAGAKRLAMSLG  IRQYEE+NGEI +  P+   PP
Sbjct:   26 QQIQLRIDESKMHSSYANTIRTSTTLDEVVLDFGLNIPMQAPNQQPTVLFSVGSRVIMNWAGAKRLAMSLGQLIRQYEEQNGEIKLQRPQPPQPP 120          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A7L9BKQ6_9BACT (DUF3467 domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7L9BKQ6_9BACT)

HSP 1 Score: 142 bits (357), Expect = 1.090e-41
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    7 QQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAP 291
            Q+Q+QLR+DESKMT+TYANTIRTST MDE+I+DFG+N+P QG G  P +VFHVGSRVVMNWAGAKRLAMSL   +RQYE+ NGEI I P +  AP
Sbjct:   10 QRQIQLRVDESKMTTTYANTIRTSTAMDEVILDFGLNLPSQGQGGEPMLVFHVGSRVVMNWAGAKRLAMSLVNVVRQYEQANGEIQIQPRQSGAP 104          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A5M4D7P9_9CYAN (DUF3467 domain-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D7P9_9CYAN)

HSP 1 Score: 139 bits (349), Expect = 1.100e-40
Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    7 QQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAPPPAE 303
            QQQ+QLRIDESKM S+YANTIRTSTT+DE+++DFG+NIPMQ P Q P ++F VGSRVVMNWAGAKRLAMSLG  IRQ+EE+NGEI +   +++  PPA+
Sbjct:    7 QQQIQLRIDESKMHSSYANTIRTSTTLDEVVLDFGLNIPMQAPNQQPMVLFSVGSRVVMNWAGAKRLAMSLGQLIRQFEEQNGEIRL---QRSGQPPAD 102          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: UPI001AC50DB7 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC50DB7)

HSP 1 Score: 137 bits (345), Expect = 5.230e-40
Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = 1
Query:    4 QQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDI 267
            QQQQVQLRIDESKM +TYANTIRTSTT DE+++DFG+N+PM GP   P ++F VGSRVVMNW+GAKRLA+SLG  +RQYEERNGEI+I
Sbjct:    7 QQQQVQLRIDESKMNTTYANTIRTSTTNDEVVLDFGINLPMPGPNNEPMLLFSVGSRVVMNWSGAKRLAISLGQVVRQYEERNGEINI 94          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A3M8FU87_9BACT (DUF3467 domain-containing protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FU87_9BACT)

HSP 1 Score: 136 bits (342), Expect = 2.670e-39
Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 QQQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAPPPAEG 306
            QQQQQVQLRIDESKMTSTYANTIRTSTT DE+++DFGMN+P QGP   P ++F VG+R +MNW+ AKRLA++LG  IRQYEERNGEI I    Q AP   EG
Sbjct:   27 QQQQQVQLRIDESKMTSTYANTIRTSTTNDEVVLDFGMNLPTQGPDGQPALLFSVGNRTIMNWSAAKRLAITLGQVIRQYEERNGEIAI----QRAPGAEEG 124          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A7V1M2V0_9BACT (DUF3467 domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1M2V0_9BACT)

HSP 1 Score: 135 bits (339), Expect = 4.420e-39
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    1 QQQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDI 267
            QQQQQVQLRIDESKM +TYANTIRTSTT DE+++DFGMN+P  GP   P ++F VGSRVVMNW+GAKRLA++LG  IRQYEERNGEI I
Sbjct:    5 QQQQQVQLRIDESKMVTTYANTIRTSTTTDEVVLDFGMNLPTAGPDGQPALLFSVGSRVVMNWSGAKRLAITLGQVIRQYEERNGEIVI 93          
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Match: A0A6N2E6J4_9BACT (DUF3467 domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6N2E6J4_9BACT)

HSP 1 Score: 134 bits (337), Expect = 1.170e-38
Identity = 64/88 (72.73%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    4 QQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPTIVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDI 267
            QQ+Q+QLRIDESKM STY+NTIRTSTT DE++MDFGMN+PMQGP     ++F +GSRV+MNW GAKRLA+SLG  IRQYEERNGEI +
Sbjct:   13 QQRQIQLRIDESKMHSTYSNTIRTSTTADEVVMDFGMNLPMQGPDGQQALLFSIGSRVIMNWVGAKRLAISLGQVIRQYEERNGEIQL 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104496.971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D4UKH5_9BACT3.840e-4779.21DUF3467 domain-containing protein n=2 Tax=Phycisph... [more]
A0A3M2CYG8_9BACT3.350e-4581.11DUF3467 domain-containing protein n=1 Tax=Planctom... [more]
A0A7C5WJC8_9BACT1.320e-4472.73DUF3467 domain-containing protein n=1 Tax=Phycisph... [more]
A0A3M2BCQ7_9BACT1.060e-4272.63DUF3467 domain-containing protein n=1 Tax=Planctom... [more]
A0A7L9BKQ6_9BACT1.090e-4171.58DUF3467 domain-containing protein n=1 Tax=Phycisph... [more]
A0A5M4D7P9_9CYAN1.100e-4069.70DUF3467 domain-containing protein n=1 Tax=Cyanobac... [more]
UPI001AC50DB75.230e-4075.00Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3M8FU87_9BACT2.670e-3969.61DUF3467 domain-containing protein n=1 Tax=Phycisph... [more]
A0A7V1M2V0_9BACT4.420e-3975.28DUF3467 domain-containing protein n=1 Tax=Phycisph... [more]
A0A6N2E6J4_9BACT1.170e-3872.73DUF3467 domain-containing protein n=1 Tax=Phycisph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104496contigM-pyrifera_M_contig104496:3..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog1278309.KB907105_gene1385
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3467)
EggNOG OGs1NCFD@1224,1SPFN@1236,2BZMS@1,32Z9B@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815552.471893-CDS-M-pyrifera_M_contig104496:2..3111622815552.471893-CDS-M-pyrifera_M_contig104496:2..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104496 3..311 +
1692277460.4652255-CDS-M-pyrifera_M_contig104496:2..3111692277460.4652255-CDS-M-pyrifera_M_contig104496:2..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104496 3..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104496.971.1prot_M-pyrifera_M_contig104496.971.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104496 3..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104496.971.1

>prot_M-pyrifera_M_contig104496.971.1 ID=prot_M-pyrifera_M_contig104496.971.1|Name=mRNA_M-pyrifera_M_contig104496.971.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
QQQQQVQLRIDESKMTSTYANTIRTSTTMDEMIMDFGMNIPMQGPGQAPT
IVFHVGSRVVMNWAGAKRLAMSLGGAIRQYEERNGEIDINPPRQAAPPPA
EG*
back to top

mRNA from alignment at M-pyrifera_M_contig104496:3..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104496.971.1 ID=mRNA_M-pyrifera_M_contig104496.971.1|Name=mRNA_M-pyrifera_M_contig104496.971.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig104496:3..311+ (Macrocystis pyrifera P11B4 male)
CAGCAGCAACAGCAAGTCCAGCTCCGCATCGACGAGTCCAAGATGACTTC GACTTACGCGAACACGATCCGCACCTCGACGACGATGGACGAGATGATCA TGGATTTCGGGATGAACATCCCGATGCAGGGACCCGGACAAGCGCCCACA ATCGTGTTCCATGTCGGCTCCCGCGTCGTCATGAACTGGGCAGGCGCCAA ACGCCTCGCGATGTCACTGGGAGGCGCGATCCGTCAGTACGAAGAACGCA ACGGCGAGATCGACATCAACCCGCCGCGCCAAGCCGCTCCCCCACCAGCT GAGGGCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104496:3..311+

>mRNA_M-pyrifera_M_contig104496.971.1 ID=mRNA_M-pyrifera_M_contig104496.971.1|Name=mRNA_M-pyrifera_M_contig104496.971.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig104496:3..311+ (Macrocystis pyrifera P11B4 male)
CAGCAGCAACAGCAAGTCCAGCTCCGCATCGACGAGTCCAAGATGACTTC
GACTTACGCGAACACGATCCGCACCTCGACGACGATGGACGAGATGATCA
TGGATTTCGGGATGAACATCCCGATGCAGGGACCCGGACAAGCGCCCACA
ATCGTGTTCCATGTCGGCTCCCGCGTCGTCATGAACTGGGCAGGCGCCAA
ACGCCTCGCGATGTCACTGGGAGGCGCGATCCGTCAGTACGAAGAACGCA
ACGGCGAGATCGACATCAACCCGCCGCGCCAAGCCGCTCCCCCACCAGCT
GAGGGCTAACAGCAGCAACAGCAAGTCCAGCTCCGCATCGACGAGTCCAA
GATGACTTCGACTTACGCGAACACGATCCGCACCTCGACGACGATGGACG
AGATGATCATGGATTTCGGGATGAACATCCCGATGCAGGGACCCGGACAA
GCGCCCACAATCGTGTTCCATGTCGGCTCCCGCGTCGTCATGAACTGGGC
AGGCGCCAAACGCCTCGCGATGTCACTGGGAGGCGCGATCCGTCAGTACG
AAGAACGCAACGGCGAGATCGACATCAACCCGCCGCGCCAAGCCGCTCCC
CCACCAGCTGAGGGCTAA
back to top