mRNA_M-pyrifera_M_contig104449.955.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104449.955.1
Unique NamemRNA_M-pyrifera_M_contig104449.955.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A7S4I819_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I819_9EUKA)

HSP 1 Score: 125 bits (314), Expect = 1.050e-32
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   16 AGGELNLVDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNNIGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIMRKAKTATHKGEV 336
            +  E++  + ++ +AAI+ VRN++D  DWVL GYEGQ+N I L+  G GG+EE+KQ L  D + YGIVRV D  DGH T KFVLI+W+GE VKIMRKA+  THKG V
Sbjct:  178 SNAEVSFGNPDEGKAAIKQVRNNDDPTDWVLFGYEGQSNVIQLVATGNGGIEEMKQQLKPDTINYGIVRVYDCYDGHTTTKFVLILWVGENVKIMRKARITTHKGAV 284          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A7J7J2X9_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7J2X9_BUGNE)

HSP 1 Score: 95.5 bits (236), Expect = 2.930e-21
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   13 SAGGELNLVDAEQMQAAIQCVRNDNDSADWVLVGYEGQT--NNIGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIMRKAKTATHKGEV 336
            SAGG   +   E +  AI  VR+D+ +  W  +GYE       +  ++ G+G V+ELK  LADD   Y + R TD IDGH+TVKFV IIW+GE+VK + KAK +THKG V
Sbjct:  182 SAGGAA-VKHGEDVTEAILDVRSDDSATTWACIGYEDDDVKKPLKCVSKGDGNVDELKLCLADDKPFYFLYRTTDTIDGHVTVKFVYIIWVGEQVKPLAKAKLSTHKGYV 290          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A2P6NAS2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAS2_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 2.990e-21
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   28 LNLVDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNNIGLIN-VGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIMRKAKTATHKGEV 336
            L   D   ++ AI+ VR D++  DW LVGYEG   +  ++N  G GG+EEL+ +L ++ V YG++R TD+ID  +TVKFV I W+GE++  M +A+  THKG+V
Sbjct:  358 LKYADESAIRNAIKEVRADDNPTDWALVGYEGDKGSTLVLNGKGSGGLEELRSHLRENAVGYGLLRTTDKIDNSVTVKFVFINWVGEKIDRMHRARLGTHKGQV 461          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A139B0E2_GONPJ (Actin depolymerizing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139B0E2_GONPJ)

HSP 1 Score: 94.7 bits (234), Expect = 6.310e-21
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    7 GQSAGGELNLVDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNN--IGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIMRKAKTATHKGEV 336
            G    G      + ++  AI+ V +D   ADWVL  YE    +  I L+  GEGG + LK  L+ D + YG+VRV D ID H TVKF LI+++G  V IM+KA+T THKG V
Sbjct:  187 GIGGAGSKGPTFSPELVEAIKAVHSDKSPADWVLATYEDNATSRPIILLGSGEGGADALKTQLSSDRIFYGLVRVIDMIDSHPTVKFALIVFVGNDVSIMKKAQTTTHKGAV 298          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A086STR5_ACRC1 (Coactosin-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086STR5_ACRC1)

HSP 1 Score: 87.8 bits (216), Expect = 1.640e-19
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 RQGQSAGGELNLVDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNN-IGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHIT-VKFVLIIWIGERVKIMRKAKTATHKGEV 336
            +Q Q   G ++ +DA ++ AA   VR+D DS +W+L+ Y G T N + L   G GG+ EL   L D  V YG  RV    D   T VKFVL++WIGE  K+MRKA+ +   G+V
Sbjct:   38 QQQQHPTGSMSGLDAPEIAAAYDAVRSDKDSTNWLLISYAGPTGNKLQLSGTGRGGLAELAAALDDGEVQYGYARVEYANDKESTRVKFVLVVWIGESTKVMRKARVSVESGDV 151          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A6B2L1Y6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L1Y6_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 6.240e-19
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   28 LNLVDAEQMQAAIQCVRNDNDSADWVLVGYEG-QTNNIGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIMRKAKTATHKGEV 336
            + L++  +++ AI  VRND    +WVLV Y+  Q+  + L   G G + ELK +L  ++V YG+ R T+QID  +T+KF  ++W GE++ +M++AK ATH G V
Sbjct:  344 IELINESEIRQAIADVRNDASETNWVLVTYDAPQSKTLKLEATGTGNLAELKSHLRQNSVMYGLYRTTEQIDDSVTIKFTYVVWHGEKIHVMQRAKLATHSGAV 447          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A544ZT44_9PEZI (ADF-H domain-containing protein n=1 Tax=Golovinomyces magnicellulatus TaxID=62714 RepID=A0A544ZT44_9PEZI)

HSP 1 Score: 85.1 bits (209), Expect = 8.730e-19
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   37 VDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNN-IGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHIT-VKFVLIIWIGERVKIMRKAKTATHKGEV 336
            +DA ++ AA   VRND D  +W+L+ Y   T N + L   G+GG+ E+  +L D  V YG VRV    D   T VKFVL+IWIGE  K+MRKA+ +   G+V
Sbjct:    4 LDAPEIAAAYDAVRNDKDETNWLLISYAAPTGNALTLSATGKGGLSEMTASLDDSQVQYGYVRVEYANDKESTRVKFVLVIWIGESTKVMRKARVSVESGDV 105          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A0B2WM35_METAS (ADF-like domain-containing protein n=1 Tax=Metarhizium album (strain ARSEF 1941) TaxID=1081103 RepID=A0A0B2WM35_METAS)

HSP 1 Score: 84.7 bits (208), Expect = 1.230e-18
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   37 VDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNN-IGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHIT-VKFVLIIWIGERVKIMRKAKTATHKGEV 336
            +DA ++  A   VR+DND+ +W+L+ Y   T N + L   G GG+ EL  +L D  V YG VRV    D   T VKFVL++WIGE  K+MRKA+ +   G+V
Sbjct:    4 LDAPEIADAYNAVRSDNDATNWMLISYAAATGNKLSLSEKGTGGIAELAASLDDAQVQYGYVRVEYANDAESTRVKFVLVVWIGEHTKVMRKARVSVESGDV 105          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A0L0H709_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H709_SPIPD)

HSP 1 Score: 87.8 bits (216), Expect = 3.310e-18
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   61 AIQCVRNDNDSADWVLVGYEGQT--NNIGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIMRKAKTATHKGEV 336
            AI+ +RND     WV+  Y+     N I L   G+GG EE+KQ  A D + Y ++RVTD +DGH TVKF  + +IG++V IM+KAK +THKG V
Sbjct:  239 AIKDLRNDKTPTKWVVGTYQDGNIANPIVLSAKGDGGAEEMKQKFAPDGIAYSLIRVTDFVDGHPTVKFAFVTFIGQQVGIMKKAKISTHKGGV 332          
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Match: A0A179F7E5_METCM (Actin-binding, cofilin/tropomyosin type n=2 Tax=Metacordyceps chlamydosporia TaxID=280754 RepID=A0A179F7E5_METCM)

HSP 1 Score: 83.6 bits (205), Expect = 3.400e-18
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   37 VDAEQMQAAIQCVRNDNDSADWVLVGY-EGQTNNIGLINVGEGGVEELKQNLADDNVCYGIVRVTDQIDGHIT-VKFVLIIWIGERVKIMRKAKTATHKGEV 336
            +DA ++ AA   VR+D D  +W+L+ Y E   + + L   G GG+ EL  +L D  V YG VRV    D   T VKF L++WIGE  K+MRKA+ +   GEV
Sbjct:    4 LDAPEIAAAYNAVRDDKDDTNWMLISYAEASGSKLSLSKTGSGGIAELAASLDDAQVQYGFVRVEYANDAESTRVKFALVVWIGENTKVMRKARVSVESGEV 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104449.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I819_9EUKA1.050e-3256.07Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7J7J2X9_BUGNE2.930e-2147.27Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A2P6NAS2_9EUKA2.990e-2145.19Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A139B0E2_GONPJ6.310e-2144.64Actin depolymerizing protein n=1 Tax=Gonapodya pro... [more]
A0A086STR5_ACRC11.640e-1942.98Coactosin-like protein n=1 Tax=Acremonium chrysoge... [more]
A0A6B2L1Y6_9EUKA6.240e-1940.38Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A544ZT44_9PEZI8.730e-1945.10ADF-H domain-containing protein n=1 Tax=Golovinomy... [more]
A0A0B2WM35_METAS1.230e-1844.12ADF-like domain-containing protein n=1 Tax=Metarhi... [more]
A0A0L0H709_SPIPD3.310e-1847.87Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A179F7E5_METCM3.400e-1843.14Actin-binding, cofilin/tropomyosin type n=2 Tax=Me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104449contigM-pyrifera_M_contig104449:3..338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score85.9
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog109760.SPPG_07234T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cofilin/tropomyosin-type actin-binding protein
EggNOG OGs39Q2N@33154,KOG3655@1,KOG3655@2759
COG Functional cat.Z
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.564209-CDS-M-pyrifera_M_contig104449:2..3381622815551.564209-CDS-M-pyrifera_M_contig104449:2..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104449 3..338 -
1692277460.0479279-CDS-M-pyrifera_M_contig104449:2..3381692277460.0479279-CDS-M-pyrifera_M_contig104449:2..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104449 3..338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104449.955.1prot_M-pyrifera_M_contig104449.955.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104449 3..338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104449.955.1

>prot_M-pyrifera_M_contig104449.955.1 ID=prot_M-pyrifera_M_contig104449.955.1|Name=mRNA_M-pyrifera_M_contig104449.955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
RQGQSAGGELNLVDAEQMQAAIQCVRNDNDSADWVLVGYEGQTNNIGLIN
VGEGGVEELKQNLADDNVCYGIVRVTDQIDGHITVKFVLIIWIGERVKIM
RKAKTATHKGEV
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mRNA from alignment at M-pyrifera_M_contig104449:3..338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104449.955.1 ID=mRNA_M-pyrifera_M_contig104449.955.1|Name=mRNA_M-pyrifera_M_contig104449.955.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig104449:3..338- (Macrocystis pyrifera P11B4 male)
CGGCAGGGCCAGAGTGCTGGTGGCGAGCTCAACCTCGTCGACGCAGAGCA GATGCAGGCGGCGATCCAGTGCGTGCGCAACGACAATGACTCGGCCGACT GGGTGCTGGTTGGCTACGAAGGCCAGACGAACAATATTGGACTGATCAAT GTGGGAGAAGGCGGCGTCGAGGAGCTGAAGCAGAACCTGGCCGATGACAA CGTCTGCTATGGCATCGTCCGCGTCACTGACCAAATTGACGGCCACATCA CCGTCAAGTTTGTGCTCATTATCTGGATTGGAGAGCGTGTGAAGATCATG CGCAAGGCAAAAACCGCCACACACAAGGGCGAAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104449:3..338-

>mRNA_M-pyrifera_M_contig104449.955.1 ID=mRNA_M-pyrifera_M_contig104449.955.1|Name=mRNA_M-pyrifera_M_contig104449.955.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig104449:3..338- (Macrocystis pyrifera P11B4 male)
CGGCAGGGCCAGAGTGCTGGTGGCGAGCTCAACCTCGTCGACGCAGAGCA
GATGCAGGCGGCGATCCAGTGCGTGCGCAACGACAATGACTCGGCCGACT
GGGTGCTGGTTGGCTACGAAGGCCAGACGAACAATATTGGACTGATCAAT
GTGGGAGAAGGCGGCGTCGAGGAGCTGAAGCAGAACCTGGCCGATGACAA
CGTCTGCTATGGCATCGTCCGCGTCACTGACCAAATTGACGGCCACATCA
CCGTCAAGTTTGTGCTCATTATCTGGATTGGAGAGCGTGTGAAGATCATG
CGCAAGGCAAAAACCGCCACACACAAGGGCGAAGTGCGGCAGGGCCAGAG
TGCTGGTGGCGAGCTCAACCTCGTCGACGCAGAGCAGATGCAGGCGGCGA
TCCAGTGCGTGCGCAACGACAATGACTCGGCCGACTGGGTGCTGGTTGGC
TACGAAGGCCAGACGAACAATATTGGACTGATCAATGTGGGAGAAGGCGG
CGTCGAGGAGCTGAAGCAGAACCTGGCCGATGACAACGTCTGCTATGGCA
TCGTCCGCGTCACTGACCAAATTGACGGCCACATCACCGTCAAGTTTGTG
CTCATTATCTGGATTGGAGAGCGTGTGAAGATCATGCGCAAGGCAAAAAC
CGCCACACACAAGGGCGAAGTG
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