mRNA_M-pyrifera_M_contig104448.954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104448.954.1
Unique NamemRNA_M-pyrifera_M_contig104448.954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A7C1H5N2_9BACT (Alanine--glyoxylate aminotransferase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1H5N2_9BACT)

HSP 1 Score: 102 bits (254), Expect = 6.100e-23
Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQ---GSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            LVPGPT    RV AE   A+Q   GS DI++ F + Y++ +  + + +         +  + +AIMTGEAM+GLW  L S+L PGD V+AV +G++G GIGDMA+  G  V  V FE++ A  P       ++  A+    PKMVT VH E
Sbjct:    8 LVPGPT----RVPAEVLNAYQTDYGSGDIEREFFELYKKTQNNIRRLI---------STRNKIAIMTGEAMLGLWSALKSSLLPGDKVLAVATGIYGYGIGDMARAIGCEVETVGFEYNEAADPQ------KVETAIKNFHPKMVTMVHCE 139          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A7I8MT91_9DELT (Serine--glyoxylate aminotransferase (EC) n=1 Tax=Olavius algarvensis associated proteobacterium Delta 3 TaxID=426688 RepID=A0A7I8MT91_9DELT)

HSP 1 Score: 101 bits (252), Expect = 1.200e-22
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            +VPGP +    V+ + Y    GS D++  FL++Y + E  L   +           ++SV I TGE M+GLWG L S L PGD V+A+ +G+FG+GIGDMA+  GA V  +   ++   S  D     R+  A+ + RPKM+TAVH E
Sbjct:    8 MVPGPVKVHPAVI-DAYHVNYGSSDLESEFLETYNQCEERLKNIM---------ATQNSVVIQTGEGMLGLWGALKSCLKPGDRVLAIATGVFGDGIGDMAEMVGARVQKMLLGYNETISDID-----RLENAIREFRPKMITAVHCE 140          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A6G0X1T9_9STRA (Alanine--glyoxylate transaminase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1T9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.240e-22
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    1 SMAYLVPGPTEFDGRVVAEGYAAFQGSPDID-KRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            SM  +VPGPT    +V  + YA   GSPD++ + F   Y   E LL + L         + E S+AI +GE M  LWG + S L PGDVV++V +GL+GEG  DMAK  GATV+ V+ +W +  +P  V       +A+ +H P++VT VH E
Sbjct:    4 SMLRMVPGPTTMSEQV-RQVYAQDIGSPDVELEDFAADYFALEDLLKRLL---------SFEGSIAIGSGEGMACLWGAMKSVLAPGDVVLSVANGLYGEGFADMAKGLGATVITVASDWTTNVNPQTVI------DAIKEHNPRLVTMVHCE 140          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A2H5Y4N2_9CHLR (Purine catabolism protein PucG n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2H5Y4N2_9CHLR)

HSP 1 Score: 100 bits (250), Expect = 2.260e-22
Identity = 65/148 (43.92%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            LVPGPT     + A  Y    GS D++  + + Y   + +L   L            + V IMTGEAMV LWG L STL PGD VVAV +G+FG GI DMA+  GA V  V F+ D A  P       R+ EA+ + RPKMVT VH E
Sbjct:    8 LVPGPTTVPPEIRA-AYQEDYGSADLEPEYYELYAETQEMLRAIL---------GTRNPVVIMTGEAMVALWGALKSTLRPGDRVVAVATGVFGYGIADMARRIGAEVEVVGFDDDEAADPE------RVEEAIRRVRPKMVTMVHCE 139          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A7C0V4L2_9DELT (Alanine--glyoxylate aminotransferase family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C0V4L2_9DELT)

HSP 1 Score: 100 bits (249), Expect = 3.100e-22
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            LVPGPT     V+  G+  F GS D+++ F D Y R E  L   +        QT  + +AIM+GEAMV LWG L STL PGD V++V +G+FG GI +MA+T  A V  V F  D A      A   ++  A+   RPKMVT VHVE
Sbjct:    8 LVPGPTAVPPAVLEAGHYDF-GSADLEEEFFDQYARVEEKLRAII--------QT-RNRIAIMSGEAMVALWGALKSTLSPGDRVLSVATGVFGYGIAEMARTITAEVTVVGFGHDEA------ADAEQVWAAIETFRPKMVTMVHVE 139          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A7C1G8A5_9CHLR (Alanine--glyoxylate aminotransferase family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1G8A5_9CHLR)

HSP 1 Score: 98.6 bits (244), Expect = 1.630e-21
Identity = 63/148 (42.57%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            LVPGPT    + V E Y    GS D++  +   Y R +A L   L            + +AIMTGE M+ LWG L S + PGD V+AV +G+FG GIG+MA+  GA V  V F +D    P +V       +A+ Q RPKMVTAVH E
Sbjct:    8 LVPGPTRVP-QAVREAYLTDYGSADLEPEYSAEYARVQAGLGAIL---------GTANKMAIMTGEGMLALWGALKSCIVPGDRVLAVSTGVFGHGIGEMAEQIGAQVRYVEFGYDHIADPDEV------EKAIRQFRPKMVTAVHCE 139          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A7C6ZVL1_9CHLR (Alanine--glyoxylate aminotransferase family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6ZVL1_9CHLR)

HSP 1 Score: 98.2 bits (243), Expect = 2.220e-21
Identity = 65/148 (43.92%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            LVPGP      VV   Y    GS D++  F   Y+R    L   L          A   V I TGE M+ LWG L ST+ PGD V+AVG+GLFG GIG+MA+  GA V  V F +DS   P  V       EA  + RPKM+TAVH E
Sbjct:    8 LVPGPVSVPA-VVRAAYTIDYGSADLEDEFFALYQRCAQKLQTIL---------GASTQVTIQTGEGMLALWGALKSTVQPGDRVLAVGAGLFGYGIGEMAQQIGAEVEVVGFPFDSIVDPQPV------WEAARRFRPKMITAVHCE 139          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A7C6EWC7_9BACT (Alanine--glyoxylate aminotransferase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6EWC7_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 5.740e-21
Identity = 63/148 (42.57%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            +VPGPT    + V   Y    GS D++  +   Y   +  L + L            + +AIM+GEAM+GLWG L S L PGD VVAV +G+FG GI +MA   GA V  V F +D A  P  VA      EA+ + RPKMVTAVH E
Sbjct:    1 MVPGPTSV-AQEVLNAYTRDYGSADLEPEYYALYEATQRQLQELL---------RTRNRIAIMSGEAMLGLWGALKSCLRPGDRVVAVTTGVFGYGIAEMAAAVGAEVEVVGFAYDEAADPQRVA------EAIRKVRPKMVTAVHCE 132          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A2E0UR82_9CHLR (Aminotransferase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0UR82_9CHLR)

HSP 1 Score: 97.1 bits (240), Expect = 6.010e-21
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            +VPGP       V   YA   GS D++  FL  Y + E+ L + L           ++ V I TGE MV LWG L S L PGD V+AV SG+FG GIG+MAK  GA V  V F ++  +    +     I E + + +PKM+TAVH E
Sbjct:    8 MVPGPVSVP-ETVLNAYAQNYGSADLESEFLSLYNQTESKLKQLL---------GTQNQVVIKTGEGMVALWGALKSCLQPGDRVLAVASGVFGYGIGEMAKKLGAQVKTVGFAYNETYHDWKM-----IEETISEFQPKMITAVHCE 140          
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Match: A0A6J4YDY8_9DELT (Serine--glyoxylate aminotransferase (EC) n=1 Tax=Olavius algarvensis Delta 1 endosymbiont TaxID=334747 RepID=A0A6J4YDY8_9DELT)

HSP 1 Score: 96.3 bits (238), Expect = 1.170e-20
Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   13 LVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYHPLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGIGDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHVE 456
            +VPGP +   + V E Y    GS D++  FL  Y +AEA L   +         + ++ V I +GE M+ LWG L S L PGD V+++ +G+FG+GIGDMA + GA V  VS  ++   S  D      I EA+   +PKM+T VH E
Sbjct:    8 MVPGPVKV-AQEVLEAYQINYGSADMEAEFLTLYNQAEANLKTIM---------STKNQVVIQSGEGMLALWGALKSCLVPGDRVLSIATGVFGDGIGDMAASIGAEVSKVSLPYNETISDMD-----EIEEAIDAFKPKMITVVHCE 140          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104448.954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1H5N2_9BACT6.100e-2341.06Alanine--glyoxylate aminotransferase family protei... [more]
A0A7I8MT91_9DELT1.200e-2239.19Serine--glyoxylate aminotransferase (EC) n=1 Tax=O... [more]
A0A6G0X1T9_9STRA1.240e-2241.18Alanine--glyoxylate transaminase n=1 Tax=Aphanomyc... [more]
A0A2H5Y4N2_9CHLR2.260e-2243.92Purine catabolism protein PucG n=3 Tax=Chloroflexi... [more]
A0A7C0V4L2_9DELT3.100e-2244.59Alanine--glyoxylate aminotransferase family protei... [more]
A0A7C1G8A5_9CHLR1.630e-2142.57Alanine--glyoxylate aminotransferase family protei... [more]
A0A7C6ZVL1_9CHLR2.220e-2143.92Alanine--glyoxylate aminotransferase family protei... [more]
A0A7C6EWC7_9BACT5.740e-2142.57Alanine--glyoxylate aminotransferase family protei... [more]
A0A2E0UR82_9CHLR6.010e-2140.54Aminotransferase n=1 Tax=Anaerolineaceae bacterium... [more]
A0A6J4YDY8_9DELT1.170e-2039.19Serine--glyoxylate aminotransferase (EC) n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104448contigM-pyrifera_M_contig104448:131..610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue4.3e-19
Seed eggNOG ortholog157072.XP_008869099.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-pyruvate transaminase activity
EggNOG OGsCOG0075@1,KOG2862@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size477
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.5123043-CDS-M-pyrifera_M_contig104448:130..6071622815551.5123043-CDS-M-pyrifera_M_contig104448:130..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104448 131..607 -
1692277460.0071442-CDS-M-pyrifera_M_contig104448:130..6071692277460.0071442-CDS-M-pyrifera_M_contig104448:130..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104448 131..607 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815551.528108-UTR-M-pyrifera_M_contig104448:607..6101622815551.528108-UTR-M-pyrifera_M_contig104448:607..610Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104448 608..610 -
1692277460.0282733-UTR-M-pyrifera_M_contig104448:607..6101692277460.0282733-UTR-M-pyrifera_M_contig104448:607..610Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104448 608..610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104448.954.1prot_M-pyrifera_M_contig104448.954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104448 131..607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104448.954.1

>prot_M-pyrifera_M_contig104448.954.1 ID=prot_M-pyrifera_M_contig104448.954.1|Name=mRNA_M-pyrifera_M_contig104448.954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MAYLVPGPTEFDGRVVAEGYAAFQGSPDIDKRFLDSYRRAEALLLKALYH
PLPFDAQTAEHSVAIMTGEAMVGLWGGLSSTLCPGDVVVAVGSGLFGEGI
GDMAKTRGATVVPVSFEWDSAFSPADVAPGGRIHEAVMQHRPKMVTAVHV
EVRKHYGQ*
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mRNA from alignment at M-pyrifera_M_contig104448:131..610-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104448.954.1 ID=mRNA_M-pyrifera_M_contig104448.954.1|Name=mRNA_M-pyrifera_M_contig104448.954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig104448:131..610- (Macrocystis pyrifera P11B4 male)
TCCATGGCGTATCTGGTGCCAGGGCCGACGGAGTTTGACGGCCGGGTGGT GGCGGAGGGCTACGCCGCATTCCAGGGGTCGCCCGACATCGACAAGCGCT TCCTGGACAGCTACCGCCGAGCAGAGGCTCTCCTTTTGAAGGCGCTGTAT CACCCCCTTCCCTTTGACGCGCAGACTGCAGAGCACAGCGTGGCAATCAT GACAGGCGAGGCAATGGTCGGCCTCTGGGGCGGCCTGAGCTCCACCCTCT GCCCCGGCGACGTCGTCGTTGCAGTGGGCTCCGGACTCTTCGGAGAGGGA ATCGGTGACATGGCCAAGACGCGGGGCGCCACTGTTGTGCCCGTGAGCTT CGAGTGGGACTCCGCCTTCTCCCCCGCCGACGTCGCGCCGGGAGGCCGCA TTCATGAGGCTGTCATGCAGCACAGGCCAAAGATGGTCACTGCCGTCCAT GTGGAGGTGCGCAAACACTACGGCCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104448:131..610-

>mRNA_M-pyrifera_M_contig104448.954.1 ID=mRNA_M-pyrifera_M_contig104448.954.1|Name=mRNA_M-pyrifera_M_contig104448.954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig104448:131..610- (Macrocystis pyrifera P11B4 male)
ATGGCGTATCTGGTGCCAGGGCCGACGGAGTTTGACGGCCGGGTGGTGGC
GGAGGGCTACGCCGCATTCCAGGGGTCGCCCGACATCGACAAGCGCTTCC
TGGACAGCTACCGCCGAGCAGAGGCTCTCCTTTTGAAGGCGCTGTATCAC
CCCCTTCCCTTTGACGCGCAGACTGCAGAGCACAGCGTGGCAATCATGAC
AGGCGAGGCAATGGTCGGCCTCTGGGGCGGCCTGAGCTCCACCCTCTGCC
CCGGCGACGTCGTCGTTGCAGTGGGCTCCGGACTCTTCGGAGAGGGAATC
GGTGACATGGCCAAGACGCGGGGCGCCACTGTTGTGCCCGTGAGCTTCGA
GTGGGACTCCGCCTTCTCCCCCGCCGACGTCGCGCCGGGAGGCCGCATTC
ATGAGGCTGTCATGCAGCACAGGCCAAAGATGGTCACTGCCGTCCATGTG
GAGGTGCGCAAACACTACGGCCAATGAATGGCGTATCTGGTGCCAGGGCC
GACGGAGTTTGACGGCCGGGTGGTGGCGGAGGGCTACGCCGCATTCCAGG
GGTCGCCCGACATCGACAAGCGCTTCCTGGACAGCTACCGCCGAGCAGAG
GCTCTCCTTTTGAAGGCGCTGTATCACCCCCTTCCCTTTGACGCGCAGAC
TGCAGAGCACAGCGTGGCAATCATGACAGGCGAGGCAATGGTCGGCCTCT
GGGGCGGCCTGAGCTCCACCCTCTGCCCCGGCGACGTCGTCGTTGCAGTG
GGCTCCGGACTCTTCGGAGAGGGAATCGGTGACATGGCCAAGACGCGGGG
CGCCACTGTTGTGCCCGTGAGCTTCGAGTGGGACTCCGCCTTCTCCCCCG
CCGACGTCGCGCCGGGAGGCCGCATTCATGAGGCTGTCATGCAGCACAGG
CCAAAGATGGTCACTGCCGTCCATGTGGAGGTGCGCAAACACTACGGCCA
ATGA
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