|
Homology
BLAST of mRNA_M-pyrifera_M_contig10444.950.1 vs. uniprot
Match: D7FRQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ8_ECTSI) HSP 1 Score: 322 bits (826), Expect = 3.430e-100 Identity = 327/566 (57.77%), Postives = 362/566 (63.96%), Query Frame = 1
Query: 4 ASELSALRAELWRTRDDLERMKSR-TPPSAKGSPGRPFDRRYRGGGSXXXXXXXXXXXXXXXDRNSWQEHATVKEVRKDRSRXXXXXXXXXXXSRRTSPPTSGEXXXXXXXXXXXXXXXAGDANDRSRESRRGEGYDNPGGSSCFGGMRL-----------VGSEG----RGSSEEEVAAEETIGILELEGVAFKNWTEEASSIAVRLIEEVKTLRWERTSWADREAAAESAAAELRV----RTESLEARLDAAEAEAKRSHKALQRAQE-AEREQAXXXXXXXXE--LRAARERERELRVQLDGTGGVSFANRGGGEXXXXXXXXXXXXXDVRGGLREELRREKEGADALQRRLDAARAAAARHERERKEWXXXXXXXXXXXXXXXXXXXXXXXXMRHMAKENAALQTRAEEAERARDRSGADASRHRDELLRLAEQRDNLLLGATRAGH---LSASSPADALAELLXXXXXXXXXXXXXXXTGNEG-LEAALGRARSEAKAARVAAQQERLRREGETRDKEEAVRQLHRLMGAARRTLGRRESRLRSSRLETEVVWNALTEAVR 1620
ASELS LRAELWRTRDDLER+KSR TPPSA SP R FDRR DR+ ++ H ++ + D R+ P XXXXXXXXXX G D E+ RG G GSS GG +L SEG +G S EEVAAEET+ LELEG AFKNWTEEASSIAVRLIEEVK LRWE+ SWA+RE AAE + + LE RL AEA+ +R+ +AL RAQ+ ER XXXXXXXX LRAA XXXXXXXXXXXXX L E LRREKEGADALQRRLDAARAA+ARHE+ERKEW XXXXXXXXXXXXXXXXXXXXX M KENAAL+ R EAERARDR+ AD+ HR+EL RL EQRDNLLLGATR G L ASSPA+ LAELL XXXXXXX G +G LEA L +ARSEAK ARVAAQQERLRRE R+KEEAVRQLHRLMGAARR +GRR+SRL+SSR+ETEVVWNALTEAVR
Sbjct: 3 ASELSELRAELWRTRDDLERIKSRGTPPSADCSPRRHFDRRRHRASPSPTLAATTACEVRNKDRD-YRRHRHSEQHKGDGLEAGGGARGDSGGGIRSXP----------XXXXXXXXXXPGSGADYDDEAPRGLGGTASSGSS-HGGRQLKFGSSRGRVGSASSEGENAAKGGSSEEVAAEETLCNLELEGAAFKNWTEEASSIAVRLIEEVKMLRWEKASWAERERAAEXXXXXXXXXXXXQADHLEERLGLAEADGRRAQEALARAQQDVERXXXXXXXXXXXAEGLRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LVEMLRREKEGADALQRRLDAARAASARHEKERKEWRSSXXXXXXXXXXXXXXXXXXXXXXXXMTKENAALRARVGEAERARDRADADSLGHREELRRLTEQRDNLLLGATRLGGRRGLVASSPAETLAELLAAXXXXXXXDATDVGPGADGELEAQLEQARSEAKLARVAAQQERLRREAAAREKEEAVRQLHRLMGAARRAVGRRDSRLKSSRMETEVVWNALTEAVR 555
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-00_003480.1 |
Exons | 4 |
Model size | 1623 |
Cds size | 1623 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815551.3117983-CDS-M-pyrifera_M_contig10444:6431..6667 | 1622815551.3117983-CDS-M-pyrifera_M_contig10444:6431..6667 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 6432..6667 - |
1692277459.9192705-CDS-M-pyrifera_M_contig10444:6431..6667 | 1692277459.9192705-CDS-M-pyrifera_M_contig10444:6431..6667 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 6432..6667 - |
1622815551.327305-CDS-M-pyrifera_M_contig10444:6802..7079 | 1622815551.327305-CDS-M-pyrifera_M_contig10444:6802..7079 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 6803..7079 - |
1692277459.9344387-CDS-M-pyrifera_M_contig10444:6802..7079 | 1692277459.9344387-CDS-M-pyrifera_M_contig10444:6802..7079 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 6803..7079 - |
1622815551.340627-CDS-M-pyrifera_M_contig10444:8485..8521 | 1622815551.340627-CDS-M-pyrifera_M_contig10444:8485..8521 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 8486..8521 - |
1692277459.9481664-CDS-M-pyrifera_M_contig10444:8485..8521 | 1692277459.9481664-CDS-M-pyrifera_M_contig10444:8485..8521 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 8486..8521 - |
1622815551.3544424-CDS-M-pyrifera_M_contig10444:8614..9688 | 1622815551.3544424-CDS-M-pyrifera_M_contig10444:8614..9688 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 8615..9688 - |
1692277459.9561603-CDS-M-pyrifera_M_contig10444:8614..9688 | 1692277459.9561603-CDS-M-pyrifera_M_contig10444:8614..9688 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10444 8615..9688 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10444.950.1 >prot_M-pyrifera_M_contig10444.950.1 ID=prot_M-pyrifera_M_contig10444.950.1|Name=mRNA_M-pyrifera_M_contig10444.950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=541bp
MASELSALRAELWRTRDDLERMKSRTPPSAKGSPGRPFDRRYRGGGSGGG GGGGGGGGGDNGDRNSWQEHATVKEVRKDRSRGGGGGGDSGLRSRRTSPP TSGESSSAAVAAAAAGAAPAGDANDRSRESRRGEGYDNPGGSSCFGGMRL VGSEGRGSSEEEVAAEETIGILELEGVAFKNWTEEASSIAVRLIEEVKTL RWERTSWADREAAAESAAAELRVRTESLEARLDAAEAEAKRSHKALQRAQ EAEREQAQAAERAKSELRAARERERELRVQLDGTGGVSFANRGGGEGGVG GGGGGGGGGDVRGGLREELRREKEGADALQRRLDAARAAAARHERERKEW RASAARLEELRRSWGKQLKKVERKMRHMAKENAALQTRAEEAERARDRSG ADASRHRDELLRLAEQRDNLLLGATRAGHLSASSPADALAELLAAAAAGV VAGAAGGGTGNEGLEAALGRARSEAKAARVAAQQERLRREGETRDKEEAV RQLHRLMGAARRTLGRRESRLRSSRLETEVVWNALTEAVR* back to topmRNA from alignment at M-pyrifera_M_contig10444:6432..9688- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig10444.950.1 ID=mRNA_M-pyrifera_M_contig10444.950.1|Name=mRNA_M-pyrifera_M_contig10444.950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3257bp|location=Sequence derived from alignment at M-pyrifera_M_contig10444:6432..9688- (Macrocystis pyrifera P11B4 male) ATGGCGTCCGAGCTGTCCGCGCTGCGTGCCGAGTTGTGGAGGACGCGCGA
CGACCTCGAGCGCATGAAGTCTCGGACTCCGCCAAGCGCCAAGGGGTCGC
CTGGCCGCCCCTTCGACCGCCGATATCGCGGCGGTGGCAGTGGTGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGATAATGGTGACCGAAACTCTTG
GCAGGAGCACGCGACGGTAAAAGAAGTACGAAAAGACCGCAGCCGCGGCG
GTGGCGGTGGCGGCGACAGTGGGCTGAGAAGTAGACGCACCAGCCCACCA
ACAAGCGGAGAATCTTCTTCAGCAGCAGTAGCAGCAGCGGCGGCAGGAGC
AGCCCCAGCAGGCGACGCGAACGATAGAAGCAGGGAAAGCAGAAGAGGCG
AAGGTTACGATAATCCCGGAGGAAGCAGCTGCTTCGGCGGCATGCGCCTT
GTTGGCTCAGAGGGGCGGGGGTCGTCAGAGGAAGAGGTGGCCGCAGAAGA
AACGATCGGCATCCTGGAGCTAGAGGGCGTGGCTTTCAAGAACTGGACCG
AGGAGGCCTCGTCGATCGCCGTCCGCCTCATCGAGGAGGTCAAGACGCTC
CGCTGGGAGAGGACCTCCTGGGCCGACCGAGAGGCGGCGGCGGAGAGCGC
GGCGGCGGAGCTGAGGGTGCGGACGGAATCCCTCGAGGCGCGTCTGGACG
CGGCCGAGGCCGAAGCGAAACGGTCTCACAAGGCGCTGCAGCGAGCGCAG
GAGGCCGAGAGGGAGCAGGCGCAAGCCGCGGAACGAGCGAAATCGGAGCT
GCGGGCCGCGCGAGAGAGGGAGCGGGAACTGAGGGTGCAGTTAGATGGCA
CGGGAGGGGTTAGTTTTGCAAACAGAGGAGGAGGCGAAGGTGGGGTTGGA
GGTGGAGGTGGAGGCGGAGGTGGAGGCGACGTCAGGGGGGGGTTAAGGGA
AGAGCTGAGACGAGAGAAGGAGGGGGCGGACGCACTACAAAGGAGGTTGG
ACGCGGCGAGGGCGGCGGCGGCGAGACACGAGCGGGAGCGGAAAGAGTGG
AGGGCGTCGGCGGCGAGGCTGGAGGTGTTGCGGCGGGGGCTGAAGGAGGC
CAAGGCCGAGGCGGCGGGGCACGAGAGGGAGCGGAGGGAGCTGCGGGCGT
CGGCTTCGAGGCTGGAGGAGCTCCGCCGGTCGTGGGGAAAGCAACTGAAG
AAGGTGAGAGATGGAGTGAGGCGTGAGCACGTACGTGGGGACGCGAGCAT
ACCACGCGAGCACGCAGCTGGTGCTGGGATGTGTTCTCTTTACTACTGTA
GTGTGTTGTTTCCGCGATCGGAGGTCGGAGATACGGCACAGCGGTAACAT
TATTGTGTATACGAGGACTGTTTAGTTACTGCTGTAGTTGGCTATTTATG
GAGGATCATAGTAAATAGCACCTACGGTACACACAACGGCCTATATTTTT
ACCTATATTTACTATCAAAATTTGGTCCCATTTGCTATGGTCCCCCGTAA
AATTAACACGCGTCAACGCCTCGGCGGCTGTCGTAGATTGTTTTTCAAGT
GGCGGCGGACTTTTAGCTGTCGTGAAGGTGGGAATCCACTGATGCGACTG
TTCATATAGGTTGAACAATCACAGAGGTTCTCGTTTTCACCGCTTATTAC
AGGGAGGGGTACTGCGGGCAGGTATTGACGATGGGTGAAAGGGATATCGA
TTGCATATCGAAAAATAAAAAATGTTTTGCTTTGTTGCATGTTGCACCAT
CGCGTGGTATTTTTTTCATGTTTTTATCGCACCATCCGCCGGCAAGAAAT
GATGCTCCCGGTACGTTTTTTTTTTTTTTTTGGTACTGGTAAATAACTCA
CGTAGACTACGTCTACAACAGGCAGTATACATTCACAACAGCAGAGTGTA
TGTGCTGGGCTTTATTTTGGTGTGGAATTCGAGGCATGGCATGAACCTAC
CGAGTACGTGGAACTTGAATGTTGAAGTTTACCATGTGTTGAACCGCTTC
ACTTGCGTTATACCTGGTACCAGGTAGACTCGTACGAGTACATTTATTCT
CCAGATCTGATTCCATGTTGTTGTATTTCTCGTCGAGCGCAACTGACCCT
TTTGGGAAGACAGCGCAGTCCCGCTTCATGGACAAACCACTCAAATTCTA
TCAGTACGTAGTTTGTCCCCAAAATGGGACAGCGGTCCTGAGAAGGGTTG
AGCTGTTTCACACGTCGTCGGACAGACGACGATGTACTGCTTGTGTGCAG
ATATTCTATAATATACTCTAACCTGCCATCGTGAAACGTTGTGCAGGATC
CATGTACTGGTACGTATTAAAGCACAGATCCAACCCAGAAAGCACGTCCT
ACGTAGATCATGCAGGTAAATACGGCTCCCACCGGCAACATGTACTAGAA
AATGCAGATCGGAAATCAGCCTGCCGTGAAAGATCTATATAAAGAAAGTA
GGAGTCGTATGATCTGTCCGAGGTGTGATTTTTATGTATGCTGAAGAGGT
CCTCCGACTCTGGTTCCAAGTAAAATGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTCCTGCTGCTGCTCCTGCTACCGTTTTCTTTCTGCTATT
TTTTCGCAGGTGGAACGGAAGATGCGGCATATGGCCAAGGAGAACGCCGC
CCTCCAGACGAGGGCTGAGGAGGCGGAGAGGGCGAGAGATCGCTCCGGCG
CCGACGCCTCCCGCCACCGCGACGAGCTCCTGCGCCTCGCCGAGCAGCGC
GACAACCTGCTCCTGGGCGCCACACGCGCCGGGCACCTGTCCGCCTCCTC
CCCGGCCGACGCCCTGGCGGAGCTGCTGGCCGCCGCCGCAGCGGGGGTCG
TAGCAGGAGCCGCAGGTGGTGGTACTGGTAACGAAGGTGACGGCCCTACC
GAGCGCGGGGCGGCCGTTCCGGTGAGAGGCGGGGGGTCCGGTCGGGAAGG
TGTCGAACGTCGGGGTGGGGGTGACGAAGGGTACAGGGGGACGGCGGGGG
GGACGGGGGCGGGGGCGGCAGGACTAGAGGCTGCACTGGGGCGGGCGAGG
TCGGAGGCGAAGGCGGCGAGGGTGGCGGCGCAGCAGGAGCGACTCAGGCG
GGAAGGGGAGACGAGAGACAAGGAGGAGGCGGTGCGGCAGCTGCACCGGC
TGATGGGGGCGGCAAGGCGGACGCTGGGGAGGAGGGAGTCGCGGCTGAGG
TCTAGCCGGCTAGAGACGGAGGTCGTGTGGAACGCGCTGACGGAGGCCGT
TCGTTGA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig10444:6432..9688- >mRNA_M-pyrifera_M_contig10444.950.1 ID=mRNA_M-pyrifera_M_contig10444.950.1|Name=mRNA_M-pyrifera_M_contig10444.950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3246bp|location=Sequence derived from alignment at M-pyrifera_M_contig10444:6432..9688- (Macrocystis pyrifera P11B4 male) ATGGCGTCCGAGCTGTCCGCGCTGCGTGCCGAGTTGTGGAGGACGCGCGA CGACCTCGAGCGCATGAAGTCTCGGACTCCGCCAAGCGCCAAGGGGTCGC CTGGCCGCCCCTTCGACCGCCGATATCGCGGCGGTGGCAGTGGTGGTGGT GGTGGTGGTGGTGGTGGTGGTGGTGGTGATAATGGTGACCGAAACTCTTG GCAGGAGCACGCGACGGTAAAAGAAGTACGAAAAGACCGCAGCCGCGGCG GTGGCGGTGGCGGCGACAGTGGGCTGAGAAGTAGACGCACCAGCCCACCA ACAAGCGGAGAATCTTCTTCAGCAGCAGTAGCAGCAGCGGCGGCAGGAGC AGCCCCAGCAGGCGACGCGAACGATAGAAGCAGGGAAAGCAGAAGAGGCG AAGGTTACGATAATCCCGGAGGAAGCAGCTGCTTCGGCGGCATGCGCCTT GTTGGCTCAGAGGGGCGGGGGTCGTCAGAGGAAGAGGTGGCCGCAGAAGA AACGATCGGCATCCTGGAGCTAGAGGGCGTGGCTTTCAAGAACTGGACCG AGGAGGCCTCGTCGATCGCCGTCCGCCTCATCGAGGAGGTCAAGACGCTC CGCTGGGAGAGGACCTCCTGGGCCGACCGAGAGGCGGCGGCGGAGAGCGC GGCGGCGGAGCTGAGGGTGCGGACGGAATCCCTCGAGGCGCGTCTGGACG CGGCCGAGGCCGAAGCGAAACGGTCTCACAAGGCGCTGCAGCGAGCGCAG GAGGCCGAGAGGGAGCAGGCGCAAGCCGCGGAACGAGCGAAATCGGAGCT GCGGGCCGCGCGAGAGAGGGAGCGGGAACTGAGGGTGCAGTTAGATGGCA CGGGAGGGGTTAGTTTTGCAAACAGAGGAGGAGGCGAAGGTGGGGTTGGA GGTGGAGGTGGAGGCGGAGGTGGAGGCGACGTCAGGGGGGGGTTAAGGGA AGAGCTGAGACGAGAGAAGGAGGGGGCGGACGCACTACAAAGGAGGTTGG ACGCGGCGAGGGCGGCGGCGGCGAGACACGAGCGGGAGCGGAAAGAGTGG AGGGCGTCGGCGGCGAGGCTGGAGATGGCGTCCGAGCTGTCCGCGCTGCG TGCCGAGTTGTGGAGGACGCGCGACGACCTCGAGCGCATGAAGTCTCGGA CTCCGCCAAGCGCCAAGGGGTCGCCTGGCCGCCCCTTCGACCGCCGATAT CGCGGCGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGG TGATAATGGTGACCGAAACTCTTGGCAGGAGCACGCGACGGTAAAAGAAG TACGAAAAGACCGCAGCCGCGGCGGTGGCGGTGGCGGCGACAGTGGGCTG AGAAGTAGACGCACCAGCCCACCAACAAGCGGAGAATCTTCTTCAGCAGC AGTAGCAGCAGCGGCGGCAGGAGCAGCCCCAGCAGGCGACGCGAACGATA GAAGCAGGGAAAGCAGAAGAGGCGAAGGTTACGATAATCCCGGAGGAAGC AGCTGCTTCGGCGGCATGCGCCTTGTTGGCTCAGAGGGGCGGGGGTCGTC AGAGGAAGAGGTGGCCGCAGAAGAAACGATCGGCATCCTGGAGCTAGAGG GCGTGGCTTTCAAGAACTGGACCGAGGAGGCCTCGTCGATCGCCGTCCGC CTCATCGAGGAGGTCAAGACGCTCCGCTGGGAGAGGACCTCCTGGGCCGA CCGAGAGGCGGCGGCGGAGAGCGCGGCGGCGGAGCTGAGGGTGCGGACGG AATCCCTCGAGGCGCGTCTGGACGCGGCCGAGGCCGAAGCGAAACGGTCT CACAAGGCGCTGCAGCGAGCGCAGGAGGCCGAGAGGGAGCAGGCGCAAGC CGCGGAACGAGCGAAATCGGAGCTGCGGGCCGCGCGAGAGAGGGAGCGGG AACTGAGGGTGCAGTTAGATGGCACGGGAGGGGTTAGTTTTGCAAACAGA GGAGGAGGCGAAGGTGGGGTTGGAGGTGGAGGTGGAGGCGGAGGTGGAGG CGACGTCAGGGGGGGGTTAAGGGAAGAGCTGAGACGAGAGAAGGAGGGGG CGGACGCACTACAAAGGAGGTTGGACGCGGCGAGGGCGGCGGCGGCGAGA CACGAGCGGGAGCGGAAAGAGTGGAGGGCGTCGGCGGCGAGGCTGGAGGA GCTCCGCCGGTCGTGGGGAAAGCAACTGAAGAAGGAGCTCCGCCGGTCGT GGGGAAAGCAACTGAAGAAGGTGGAACGGAAGATGCGGCATATGGCCAAG GAGAACGCCGCCCTCCAGACGAGGGCTGAGGAGGCGGAGAGGGCGAGAGA TCGCTCCGGCGCCGACGCCTCCCGCCACCGCGACGAGCTCCTGCGCCTCG CCGAGCAGCGCGACAACCTGCTCCTGGGCGCCACACGCGCCGGGCACCTG TCCGCCTCCTCCCCGGCCGACGCCCTGGCGGAGCTGCTGGCCGCCGCCGC AGCGGGGGTCGTAGCAGGAGCCGCAGGTGGTGGTACTGGTAACGAAGGTG GAACGGAAGATGCGGCATATGGCCAAGGAGAACGCCGCCCTCCAGACGAG GGCTGAGGAGGCGGAGAGGGCGAGAGATCGCTCCGGCGCCGACGCCTCCC GCCACCGCGACGAGCTCCTGCGCCTCGCCGAGCAGCGCGACAACCTGCTC CTGGGCGCCACACGCGCCGGGCACCTGTCCGCCTCCTCCCCGGCCGACGC CCTGGCGGAGCTGCTGGCCGCCGCCGCAGCGGGGGTCGTAGCAGGAGCCG CAGGTGGTGGTACTGGTAACGAAGGACTAGAGGCTGCACTGGGGCGGGCG AGGTCGGAGGCGAAGGCGGCGAGGGTGGCGGCGCAGCAGGAGCGACTCAG GCGGGAAGGGGAGACGAGAGACAAGGAGGAGGCGGTGCGGCAGCTGCACC GGCTGATGGGGGCGGCAAGGCGGACGCTGGGGAGGAGGGAGTCGCGGCTG AGGTCTAGCCGGCTAGAGACGGAGGTCGTGTGGAACGCGCTGACGGAGGC CGTTCGTTGAGACTAGAGGCTGCACTGGGGCGGGCGAGGTCGGAGGCGAA GGCGGCGAGGGTGGCGGCGCAGCAGGAGCGACTCAGGCGGGAAGGGGAGA CGAGAGACAAGGAGGAGGCGGTGCGGCAGCTGCACCGGCTGATGGGGGCG GCAAGGCGGACGCTGGGGAGGAGGGAGTCGCGGCTGAGGTCTAGCCGGCT AGAGACGGAGGTCGTGTGGAACGCGCTGACGGAGGCCGTTCGTTGA back to top
|