mRNA_M-pyrifera_M_contig104386.942.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104386.942.1
Unique NamemRNA_M-pyrifera_M_contig104386.942.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A0A2T7DV55_9POAL (Glutamate receptor n=6 Tax=Paniceae TaxID=147428 RepID=A0A2T7DV55_9POAL)

HSP 1 Score: 83.2 bits (204), Expect = 1.580e-15
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   46 FSPEEQFKHLSTRVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAA----GPLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            FS  +       R V+ +WLFV+L+  +S+TASL S LTV    T +  IDD + S+  I   +G F  +Y++E L IP S +VP +T+ E  D +  G  D G+AA     P ++  L++   HC   +VG E  K  W F  + +   A D
Sbjct:  637 FSHRQNTVSALGRFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGIDDLISSALPIGYQAGKFTRNYLIEELNIPESRLVPLNTIQEYADALKRGPKDGGVAAIVDEMPYVDIFLSY---HCNFRVVGQEFTKEGWGFAFQRDSPLAAD 786          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: K3XV44_SETIT (Glutamate receptor n=12 Tax=Panicoideae TaxID=147369 RepID=K3XV44_SETIT)

HSP 1 Score: 82.4 bits (202), Expect = 2.930e-15
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   46 FSPEEQFKHLSTRVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAA----GPLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            FS  +       R V+ +WLFV+L+  +S+TASL S LTV    T +  IDD + S+  I   +G F  +Y++E L IP S +VP +T+ E  D +  G  D G+ A     P ++  L++   HC   IVG E  K  W F  + +   A D
Sbjct:  636 FSHRQNTVSALGRFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGIDDLISSALPIGYQAGKFTRNYLIEELNIPESRLVPLNTIQEYADALKRGPKDGGVGAIVDETPYVQIFLSY---HCNFRIVGQEFTKEGWGFAFQRDSPLAAD 785          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A2YG87_ORYSI (Glutamate receptor n=12 Tax=Oryza TaxID=4527 RepID=A2YG87_ORYSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.930e-15
Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   82 RVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDDVDSST-KIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAA----GPLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            R V+ +WLFV+L+  +S+TASL S LTV    T +  +D + SS   I   +G F  +Y++E L +P S +VP +T+DE  D +  G  D G+AA     P +E  L++   HC   IVG E  K  W F  + +   A D
Sbjct:  651 RFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGLDSLLSSALPIGYQAGKFTRNYLIEELNVPESHLVPLNTIDEYADALNRGPKDGGVAAIVDEMPYIEIFLSY---HCNFRIVGQEFTKEGWGFAFQRDSPLAAD 788          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: J3MGW4_ORYBR (Glutamate receptor n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3MGW4_ORYBR)

HSP 1 Score: 81.6 bits (200), Expect = 5.430e-15
Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   82 RVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAAG----PLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            R V+ +WLFV+L+  +S+TASL S LTV    T +  ID  + S+  I   +G F ++Y++E L +P S +VP ST+DE  D +  G    G+AA     P +E  L++   HC   IVG E  K  W F  + +   A D
Sbjct:  647 RFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGIDSLISSALPIGYQAGKFTKNYLIEELNVPESRLVPLSTIDEYADALNRGPKYGGVAAIVDEIPYIEIFLSY---HCNFRIVGQEFTKEGWGFAFQRDSPLAAD 784          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A0A2G2W9E4_CAPBA (Glutamate receptor n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W9E4_CAPBA)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-14
Identity = 56/159 (35.22%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   31 VLWTVFS-----PEEQFKHLSTRVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAAGPLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            +LW  FS     P E       R+V+ +WLFVML+ T+S+TASL SFLTV    + +  I+  V S+  I    GSF E+Y+ E + I  S +VP  + +E  D +  G V   +   P ++  L+    +CG   VG E  K+ W F  R +   A D
Sbjct:  617 ILWFSFSTIFGAPRENTVSTLGRIVLLIWLFVMLIITSSYTASLTSFLTVQQLSSSIKGIESLVTSNEAIGYQVGSFVENYLFEEVNIAKSRLVPLGSPEEYADALEQGRVAAVVDERPYVDLFLST---YCGFQKVGPEFTKSGWGFAFRRDSPLAID 772          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A0A0A9JVD6_ARUDO (PBPe domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JVD6_ARUDO)

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-14
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   46 FSPEEQFKHLSTRVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAA----GPLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            FS  +  +    R V+ +WLFV+L+  +S+TASL S LTV    T +  +D+ + S+  I   +G F  +Y++E L IP S +VP +T+ +  D +  G  D G+AA     P +E  L++   +C   IVG E  K  W F  + +   A D
Sbjct:    3 FSHRQNTESALGRFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGLDNLISSALPIGYQAGKFTRNYLIEELNIPESRLVPLNTIKDYADALNRGPKDGGVAAIVDEMPYVEIFLSY---YCNFRIVGQEFTKEGWGFAFQRDSPLAAD 152          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A0A061DF27_THECC (Glutamate receptor isoform 5 n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DF27_THECC)

HSP 1 Score: 80.1 bits (196), Expect = 1.790e-14
Identity = 59/154 (38.31%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   31 VLWTVFSP---EEQFKHLST--RVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAAGPLLEEALAHA------KPHCGLIIVGSEAAKTPWAF 456
            VLW  FS      + + LST  RVV+ +WLF++L+ T+S+TASL S LTV    + V  ID  + +   I    GSF E+Y+ E L IP S +VP ++ D+    + DG    G+AA  +++E   HA         C   IVGSE +K  W F
Sbjct:  540 VLWFSFSTLFFSHRERTLSTLGRVVLFIWLFIVLILTSSYTASLTSILTVEQLSSPVKGIDSLISTGDPIGYQRGSFAENYLSEELSIPKSRLVPLNSADDYAKALKDGPKKGGVAA--VIDE---HAYMELFLSTQCEFSIVGSEFSKMGWGF 688          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: S8E9P1_9LAMI (Glutamate receptor (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E9P1_9LAMI)

HSP 1 Score: 80.1 bits (196), Expect = 1.840e-14
Identity = 51/148 (34.46%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   31 VLWTVFS-----PEEQFKHLSTRVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAAGPLLEEALAHAKPHCGLIIVGSEAAKTPWAF 456
            + W  FS     P+E       RVV+ +WLFV L+ T+S+TASL++ LTV H+   +  I+  + S+ +I    GSF E+Y++E L I  S +VP  + +E  D +  G V   +   P ++  LA+   +C   IVG E  K+   F
Sbjct:  597 IFWFGFSSFFSAPKENMMGALARVVLLIWLFVALIVTSSYTASLSAILTVEHAAPSITGIESLIMSNDRIGYQLGSFSEYYLIEQLNIAKSRLVPLGSPEEYADALTTGNVSAIVDERPYVDLFLAN---YCSFEIVGQEFTKSSMGF 741          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A0A061DG48_THECC (Glutamate receptor n=4 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DG48_THECC)

HSP 1 Score: 80.1 bits (196), Expect = 1.870e-14
Identity = 59/154 (38.31%), Postives = 83/154 (53.90%), Query Frame = 1
Query:   31 VLWTVFSP---EEQFKHLST--RVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAAGPLLEEALAHA------KPHCGLIIVGSEAAKTPWAF 456
            VLW  FS      + + LST  RVV+ +WLF++L+ T+S+TASL S LTV    + V  ID  + +   I    GSF E+Y+ E L IP S +VP ++ D+    + DG    G+AA  +++E   HA         C   IVGSE +K  W F
Sbjct:  632 VLWFSFSTLFFSHRERTLSTLGRVVLFIWLFIVLILTSSYTASLTSILTVEQLSSPVKGIDSLISTGDPIGYQRGSFAENYLSEELSIPKSRLVPLNSADDYAKALKDGPKKGGVAA--VIDE---HAYMELFLSTQCEFSIVGSEFSKMGWGF 780          
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Match: A0A5J9TB80_9POAL (Glutamate receptor n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TB80_9POAL)

HSP 1 Score: 79.7 bits (195), Expect = 2.540e-14
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   46 FSPEEQFKHLSTRVVITVWLFVMLVATASFTASLASFLTVHHSQTVVNSIDD-VDSSTKIALLSGSFEEHYVLENLEIPPSVIVPTSTVDEILDLVADGTVDVGIAA----GPLLEEALAHAKPHCGLIIVGSEAAKTPWAFPMRPNLYFAND 489
            FS  +       R V+ +WLFV+L+  +S+TASL S LTV    T +  +D+ + S+  I   +G F  +Y++E L +P S +VP +T+ E  D +  G  D G+AA     P +E  L+    HC   IVG E  K  W F  + +   A D
Sbjct:  633 FSHRQNTVSALGRFVLIIWLFVVLIINSSYTASLTSILTVQQLATGITGLDNLISSALPIGYQAGKFTRNYLIEELNVPESRLVPLNTIQEYADALNRGPKDGGVAAIVDEMPYVELFLSK---HCNFRIVGHEFTKEGWGFAFQRDSPLAAD 782          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104386.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T7DV55_9POAL1.580e-1535.29Glutamate receptor n=6 Tax=Paniceae TaxID=147428 R... [more]
K3XV44_SETIT2.930e-1535.29Glutamate receptor n=12 Tax=Panicoideae TaxID=1473... [more]
A2YG87_ORYSI2.930e-1537.59Glutamate receptor n=12 Tax=Oryza TaxID=4527 RepID... [more]
J3MGW4_ORYBR5.430e-1537.59Glutamate receptor n=1 Tax=Oryza brachyantha TaxID... [more]
A0A2G2W9E4_CAPBA1.000e-1435.22Glutamate receptor n=1 Tax=Capsicum baccatum TaxID... [more]
A0A0A9JVD6_ARUDO1.700e-1433.99PBPe domain-containing protein n=2 Tax=Arundo dona... [more]
A0A061DF27_THECC1.790e-1438.31Glutamate receptor isoform 5 n=1 Tax=Theobroma cac... [more]
S8E9P1_9LAMI1.840e-1434.46Glutamate receptor (Fragment) n=1 Tax=Genlisea aur... [more]
A0A061DG48_THECC1.870e-1438.31Glutamate receptor n=4 Tax=Theobroma cacao TaxID=3... [more]
A0A5J9TB80_9POAL2.540e-1434.64Glutamate receptor n=1 Tax=Eragrostis curvula TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104386contigM-pyrifera_M_contig104386:1..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.8
Seed ortholog evalue1.6e-13
Seed eggNOG ortholog4555.Si005801m
KEGG koko:K05387
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
Hectar predicted targeting categorysignal anchor
GOsGO:0001101,GO:0003674,GO:0004888,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006950,GO:0007154,GO:0007165,GO:0008066,GO:0008150,GO:0008324,GO:0009266,GO:0009409,GO:0009507,GO:0009536,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009719,GO:0009987,GO:0010033,GO:0010034,GO:0010243,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015318,GO:0016020,GO:0019722,GO:0019932,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0033554,GO:0034220,GO:0035556,GO:0038023,GO:0042221,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046873,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060089,GO:0065007,GO:0070417,GO:0070588,GO:0070838,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071236,GO:0071260,GO:0071310,GO:0071311,GO:0071417,GO:0071495,GO:0071496,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0104004,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.Glutamate-gated receptor that probably acts as non- selective cation channel
EggNOG OGs37J5Z@33090,3G89R@35493,3I2SP@38820,3KX2U@4447,KOG1052@1,KOG1052@2759
COG Functional cat.EPT
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Exons1
Model size489
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.8925014-CDS-M-pyrifera_M_contig104386:0..4891622815550.8925014-CDS-M-pyrifera_M_contig104386:0..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104386 1..489 -
1692277459.7493913-CDS-M-pyrifera_M_contig104386:0..4891692277459.7493913-CDS-M-pyrifera_M_contig104386:0..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104386 1..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104386.942.1prot_M-pyrifera_M_contig104386.942.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104386 1..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104386.942.1

>prot_M-pyrifera_M_contig104386.942.1 ID=prot_M-pyrifera_M_contig104386.942.1|Name=mRNA_M-pyrifera_M_contig104386.942.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MGELGTATYAVLWTVFSPEEQFKHLSTRVVITVWLFVMLVATASFTASLA
SFLTVHHSQTVVNSIDDVDSSTKIALLSGSFEEHYVLENLEIPPSVIVPT
STVDEILDLVADGTVDVGIAAGPLLEEALAHAKPHCGLIIVGSEAAKTPW
AFPMRPNLYFAND
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mRNA from alignment at M-pyrifera_M_contig104386:1..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104386.942.1 ID=mRNA_M-pyrifera_M_contig104386.942.1|Name=mRNA_M-pyrifera_M_contig104386.942.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig104386:1..489- (Macrocystis pyrifera P11B4 male)
ATGGGAGAGTTGGGAACTGCGACGTACGCAGTGCTGTGGACCGTATTTTC ACCGGAAGAGCAATTCAAACACTTGTCAACCAGAGTTGTGATCACAGTTT GGTTATTTGTGATGCTTGTTGCAACGGCAAGTTTCACTGCTTCTCTTGCA TCTTTCCTCACAGTACATCATTCACAAACAGTTGTCAACTCTATTGATGA TGTGGATAGTTCTACCAAGATTGCACTCTTGTCTGGATCATTTGAAGAGC ATTATGTGCTTGAAAATCTCGAGATCCCACCTTCTGTCATTGTTCCTACA TCAACAGTGGACGAAATTTTGGACCTCGTTGCGGATGGAACTGTTGATGT TGGGATTGCTGCTGGTCCACTTCTAGAAGAAGCACTTGCACACGCGAAAC CACATTGTGGATTGATTATTGTTGGGAGTGAGGCTGCGAAAACTCCATGG GCATTTCCCATGCGGCCAAACCTATACTTTGCAAATGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104386:1..489-

>mRNA_M-pyrifera_M_contig104386.942.1 ID=mRNA_M-pyrifera_M_contig104386.942.1|Name=mRNA_M-pyrifera_M_contig104386.942.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig104386:1..489- (Macrocystis pyrifera P11B4 male)
ATGGGAGAGTTGGGAACTGCGACGTACGCAGTGCTGTGGACCGTATTTTC
ACCGGAAGAGCAATTCAAACACTTGTCAACCAGAGTTGTGATCACAGTTT
GGTTATTTGTGATGCTTGTTGCAACGGCAAGTTTCACTGCTTCTCTTGCA
TCTTTCCTCACAGTACATCATTCACAAACAGTTGTCAACTCTATTGATGA
TGTGGATAGTTCTACCAAGATTGCACTCTTGTCTGGATCATTTGAAGAGC
ATTATGTGCTTGAAAATCTCGAGATCCCACCTTCTGTCATTGTTCCTACA
TCAACAGTGGACGAAATTTTGGACCTCGTTGCGGATGGAACTGTTGATGT
TGGGATTGCTGCTGGTCCACTTCTAGAAGAAGCACTTGCACACGCGAAAC
CACATTGTGGATTGATTATTGTTGGGAGTGAGGCTGCGAAAACTCCATGG
GCATTTCCCATGCGGCCAAACCTATACTTTGCAAATGATATGGGAGAGTT
GGGAACTGCGACGTACGCAGTGCTGTGGACCGTATTTTCACCGGAAGAGC
AATTCAAACACTTGTCAACCAGAGTTGTGATCACAGTTTGGTTATTTGTG
ATGCTTGTTGCAACGGCAAGTTTCACTGCTTCTCTTGCATCTTTCCTCAC
AGTACATCATTCACAAACAGTTGTCAACTCTATTGATGATGTGGATAGTT
CTACCAAGATTGCACTCTTGTCTGGATCATTTGAAGAGCATTATGTGCTT
GAAAATCTCGAGATCCCACCTTCTGTCATTGTTCCTACATCAACAGTGGA
CGAAATTTTGGACCTCGTTGCGGATGGAACTGTTGATGTTGGGATTGCTG
CTGGTCCACTTCTAGAAGAAGCACTTGCACACGCGAAACCACATTGTGGA
TTGATTATTGTTGGGAGTGAGGCTGCGAAAACTCCATGGGCATTTCCCAT
GCGGCCAAACCTATACTTTGCAAATGAT
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