mRNA_M-pyrifera_M_contig10437.938.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10437.938.1
Unique NamemRNA_M-pyrifera_M_contig10437.938.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.940e-40
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   22 RVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            R+LVPETTDQFLWI+IVG FG+F AAFGIGANDVANAFATSVG+KA+T++QA+ILAGIFEFLGA+ LG+HVTK IR  IAD
Sbjct:    9 RILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 4.700e-38
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 1
Query:    1 MSLPPDGRVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            MS     R+L PE +DQ+LWIV+VG FGSF+AAFGIGANDVANAF+TSVG++AVTL+QAI+LAG+FEFLGALLLG  VTKAIRE+I +
Sbjct:    1 MSEALQPRMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENIVN 88          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.480e-37
Identity = 60/81 (74.07%), Postives = 73/81 (90.12%), Query Frame = 1
Query:   22 RVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            R+L PE TDQFLWI+IV  FG+F AAFGIGANDVANAFATSVG+KA+T++QA++LAG+FEFLGA+ LG+HVTK IR+ IAD
Sbjct:   34 RILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIAD 114          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.050e-35
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1
Query:   22 RVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            R+L PETTD FLWIVIVG FG+F AAFGIGANDVANAFATSVG+KA+T++QA++LAGIFEFLGA+ LG+HVTK IR  IAD
Sbjct:    9 RILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.710e-33
Identity = 60/81 (74.07%), Postives = 71/81 (87.65%), Query Frame = 1
Query:   22 RVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            R+L P+TT+ FLWI+IVG FG+F AAFGIGANDVANAFATSVG+KA+TLRQA++LAGIFEFLGA+ LG+HVT  IR   AD
Sbjct:    9 RILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTAD 89          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.460e-32
Identity = 59/83 (71.08%), Postives = 73/83 (87.95%), Query Frame = 1
Query:   16 DGRVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            + R+L PETTDQ+LWI+IV  FG+F AAFGIGANDVANAFATSVG+KA+T++QA++LA IFEF GA+ LG+HVTK IR+ IAD
Sbjct:    6 EERILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIAD 88          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.890e-29
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1
Query:   16 DGRVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            D R+L P  T +FLWIVIV   G+  AAFGIGAND+ANAFATSVG++A+T++QA++LAG+FEFLGA+ LG+HV K IR  IAD
Sbjct:    7 DERILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIAD 89          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: D8LJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ0_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.210e-28
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   16 DGRVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            + RVL PE T Q+LWIV V   G+  AA GIGANDVAN+FATSVGSKA+TL++A++LAGI EF GALLLG     AI ESIAD
Sbjct:    7 EQRVLAPEATGQWLWIVSVASLGALCAALGIGANDVANSFATSVGSKALTLKKALLLAGICEFFGALLLGRQAMTAISESIAD 89          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.600e-27
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   46 DQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            D +LWIVIVG F +   A+GIGANDVANAF+TSVG+K +TL+QA+IL GIFEFLGA L G+HVTK IR+ IAD
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79          
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.720e-25
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   46 DQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVGSKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD 264
            D +LWIVIVG F +   A+GIGANDVANAF+TSVG+K +TL+QA+IL GIFEFLGA L G+HVTK IR+ IAD
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10437.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN4_9PHAE2.940e-4080.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJQ3_ECTSI4.700e-3872.73Pho4 high affinity phosphate transporter, probable... [more]
D7G5U7_ECTSI8.480e-3774.07High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D7G0K9_ECTSI2.050e-3577.78Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI7.710e-3374.07Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE1.460e-3271.08Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI2.890e-2965.06Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ0_ECTSI2.210e-2866.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U1NDP7_9STRA4.600e-2769.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2V1L4_9STRA5.720e-2569.86Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10437contigM-pyrifera_M_contig10437:8838..9790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog2880.D7G0K9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
Ec32 ortholog descriptionPhosphate transporter
Ec32 orthologEc-17_002900.1
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.6962378-CDS-M-pyrifera_M_contig10437:8837..89311622815550.6962378-CDS-M-pyrifera_M_contig10437:8837..8931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10437 8838..8931 -
1692277459.6708126-CDS-M-pyrifera_M_contig10437:8837..89311692277459.6708126-CDS-M-pyrifera_M_contig10437:8837..8931Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10437 8838..8931 -
1622815550.7094536-CDS-M-pyrifera_M_contig10437:9620..97901622815550.7094536-CDS-M-pyrifera_M_contig10437:9620..9790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10437 9621..9790 -
1692277459.6870596-CDS-M-pyrifera_M_contig10437:9620..97901692277459.6870596-CDS-M-pyrifera_M_contig10437:9620..9790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10437 9621..9790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10437.938.1prot_M-pyrifera_M_contig10437.938.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10437 8838..9790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10437.938.1

>prot_M-pyrifera_M_contig10437.938.1 ID=prot_M-pyrifera_M_contig10437.938.1|Name=mRNA_M-pyrifera_M_contig10437.938.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MSLPPDGRVLVPETTDQFLWIVIVGVFGSFIAAFGIGANDVANAFATSVG
SKAVTLRQAIILAGIFEFLGALLLGTHVTKAIRESIAD
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mRNA from alignment at M-pyrifera_M_contig10437:8838..9790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10437.938.1 ID=mRNA_M-pyrifera_M_contig10437.938.1|Name=mRNA_M-pyrifera_M_contig10437.938.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=953bp|location=Sequence derived from alignment at M-pyrifera_M_contig10437:8838..9790- (Macrocystis pyrifera P11B4 male)
ATGAGCCTCCCACCCGATGGTCGTGTCCTGGTCCCGGAGACGACGGATCA GTTCTTATGGATTGTCATTGTCGGTGTCTTCGGTTCTTTCATAGCGGCGT TCGGGATCGGAGCAAACGATGTTGCGAATGCCTTTGCCACTTCAGTGGGT TCGAAGGCTGTCACGCTCAGGTAAGCCAGCCAGCCCATCACAAAAATCCC ATAATTCTTAACTCGCAGGGGATGCATGCAATGCATGCATGATGCGCGGA AAGCAATATTCCACAGCTAGTTAGCTGCTGTTGCTGCTGCCAGCTGCTAT GTAATGCTCTGTGCAGCTGCAAAGTTTAGCACTACCATGGTATACTACTT GGTGGTGTAACTGGGTTCGAAGCCTTTATATCGGTTTAGGGAAAGGCCTG CTTGCTGCTCTGCTGCGTTACTATGTTGTTGGTGCTGCTGCTGTGGCACG GCGCCGGTCGTGCAGGTCTCTCGTCTCTCACCACAAAATGCACAAAATGA AATGGCGGCCAGTGGTGGTTGTGGGGGTTGGATATTTTCTGGTATCCAAA AGTGAAGTACTCCTTCTGGTTACTCTTTTTGAGCTACTCTCATCCGCATC AACCGCACGCGGCAGAAGAAACGATCCGACGTAAAAAGCCGCAAGTTCAA TGGGGTATTGATAGTGGGGGTTACATATTTTCTGGCAGTGAAGTCAAGTA ATCCTCGCCATCGTGGATACTCTCAGCCCCATGAATCACAGCACAGCAAC ACAGGCCGAAAAAAATGCGTACCACACCCTACTATTGATATGAATAACAT CATTTTTGTCAGTTGTTACTCGTGCTGCTGTTGTGTCTTTGGCGCCATGC GTCCCTCAGGCAGGCCATAATCTTGGCGGGGATCTTCGAATTTCTGGGCG CCTTGCTGTTGGGCACACACGTGACGAAGGCCATCCGCGAGAGTATTGCA GAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10437:8838..9790-

>mRNA_M-pyrifera_M_contig10437.938.1 ID=mRNA_M-pyrifera_M_contig10437.938.1|Name=mRNA_M-pyrifera_M_contig10437.938.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig10437:8838..9790- (Macrocystis pyrifera P11B4 male)
ATGAGCCTCCCACCCGATGGTCGTGTCCTGGTCCCGGAGACGACGGATCA
GTTCTTATGGATTGTCATTGTCGGTGTCTTCGGTTCTTTCATAGCGGCGT
TCGGGATCGGAGCAAACGATGTTGCGAATGCCTTTGCCACTTCAGTGGGT
TCGAAGGCTGTCACGCTCAGATGAGCCTCCCACCCGATGGTCGTGTCCTG
GTCCCGGAGACGACGGATCAGTTCTTATGGATTGTCATTGTCGGTGTCTT
CGGTTCTTTCATAGCGGCGTTCGGGATCGGAGCAAACGATGTTGCGAATG
CCTTTGCCACTTCAGTGGGTTCGAAGGCTGTCACGCTCAGGCAGGCCATA
ATCTTGGCGGGGATCTTCGAATTTCTGGGCGCCTTGCTGTTGGGCACACA
CGTGACGAAGGCCATCCGCGAGAGTATTGCAGATGCAGGCCATAATCTTG
GCGGGGATCTTCGAATTTCTGGGCGCCTTGCTGTTGGGCACACACGTGAC
GAAGGCCATCCGCGAGAGTATTGCAGAT
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