mRNA_M-pyrifera_M_contig104354.932.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104354.932.1
Unique NamemRNA_M-pyrifera_M_contig104354.932.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A9TNC8_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TNC8_PHYPA)

HSP 1 Score: 159 bits (403), Expect = 3.090e-48
Identity = 77/103 (74.76%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:   10 AKVEENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            A+ EENVTLGPSV++GE +FGVAHI ASFNDTF+H+TD+SG ETI+RVTGGMKVKADRDE+SPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:    9 AEKEENVTLGPSVRDGEHVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDEASPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 111
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: M1XK24_9METZ (40S ribosomal protein S14 n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XK24_9METZ)

HSP 1 Score: 159 bits (403), Expect = 3.390e-48
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    7 EAKVEENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EAK EEN+ LGP V EGE +FGVAHI ASFNDTF+H+TD+SG ETI+RVTGGMKVKADRDE+SPYAAMLAAQDVA R K VGITA+HIK+R TGG+R++  GPG
Sbjct:   11 EAKKEENIVLGPQVGEGENVFGVAHIFASFNDTFVHITDLSGKETITRVTGGMKVKADRDEASPYAAMLAAQDVAVRCKEVGITALHIKLRATGGNRTKTPGPG 114
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A176W3G3_MARPO (Uncharacterized protein n=5 Tax=Embryophyta TaxID=3193 RepID=A0A176W3G3_MARPO)

HSP 1 Score: 159 bits (401), Expect = 6.230e-48
Identity = 77/100 (77.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EENVTLGP+V+EGE +FGVAHI ASFNDTF+H+TD+SG ETI RVTGGMKVKADRDESSPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:   12 EENVTLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 111
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A8J5F7Y5_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7Y5_ZINOF)

HSP 1 Score: 158 bits (399), Expect = 8.120e-48
Identity = 76/100 (76.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EENVTLGP+V+EGEQ+FGVAHI ASFNDTFIH+TD+SG ET+ R+TGGMKVKADRDESSPYAAMLAAQDV++R K +GITA+HIK+R TGG++++  GPG
Sbjct:   12 EENVTLGPTVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPG 111
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A1U8B504_NELNU (40S ribosomal protein S14-like n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8B504_NELNU)

HSP 1 Score: 158 bits (399), Expect = 1.220e-47
Identity = 77/100 (77.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EENVTLGP+V+EGE +FGVAHI ASFNDTFIH+TD+SG ETI R+TGGMKVKADRDESSPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:   11 EENVTLGPTVREGENVFGVAHIFASFNDTFIHVTDLSGRETIVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 110
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A804IE59_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Petrosaviidae TaxID=1437197 RepID=A0A804IE59_MUSAM)

HSP 1 Score: 158 bits (399), Expect = 1.260e-47
Identity = 76/100 (76.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            E+NVTLGP+V+EGEQ+FGVAHI ASFNDTFIH+TD+SG ET+ R+TGGMKVKADRDESSPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:   12 EDNVTLGPAVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 111
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A6P3YX64_ZIZJJ (40S ribosomal protein S14-like isoform X1 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3YX64_ZIZJJ)

HSP 1 Score: 157 bits (398), Expect = 1.270e-47
Identity = 76/100 (76.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EEN+TLGP+VK+GE +FGVAHI ASFNDTFIH+TD+SG ETI R+TGGMKVKADRDESSPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:   12 EENITLGPAVKDGEHVFGVAHIFASFNDTFIHVTDLSGRETIVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 111
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A2K1K459_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K459_PHYPA)

HSP 1 Score: 159 bits (403), Expect = 2.500e-47
Identity = 77/103 (74.76%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:   10 AKVEENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            A+ EENVTLGPSV++GE +FGVAHI ASFNDTF+H+TD+SG ETI+RVTGGMKVKADRDE+SPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:   78 AEKEENVTLGPSVRDGEHVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDEASPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 180
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: V4LDT2_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LDT2_EUTSA)

HSP 1 Score: 157 bits (396), Expect = 2.550e-47
Identity = 75/100 (75.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EENVTLGP+V+EGEQ+FGV HI ASFNDTFIH+TD+SG ET+ R+TGGMKVKADRDESSPYAAMLAAQDVA+R K +GITA+H+K+R TGG++++  GPG
Sbjct:   11 EENVTLGPAVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPG 110
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BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Match: A0A8J5F6F0_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F6F0_ZINOF)

HSP 1 Score: 159 bits (402), Expect = 2.800e-47
Identity = 77/100 (77.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   19 EENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISRVTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRSRALGPG 318
            EENVTLGP+V+EGEQ+FGVAHI ASFNDTFIH+TD+SG ET+ R+TGGMKVKADRDESSPYAAMLAAQDVA+R K +GITA+HIK+R TGG++++  GPG
Sbjct:   87 EENVTLGPTVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPG 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104354.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9TNC8_PHYPA3.090e-4874.76Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
M1XK24_9METZ3.390e-4875.9640S ribosomal protein S14 n=1 Tax=Sycon ciliatum T... [more]
A0A176W3G3_MARPO6.230e-4877.00Uncharacterized protein n=5 Tax=Embryophyta TaxID=... [more]
A0A8J5F7Y5_ZINOF8.120e-4876.00Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A1U8B504_NELNU1.220e-4777.0040S ribosomal protein S14-like n=10 Tax=Mesangiosp... [more]
A0A804IE59_MUSAM1.260e-4776.00(wild Malaysian banana) hypothetical protein n=2 T... [more]
A0A6P3YX64_ZIZJJ1.270e-4776.0040S ribosomal protein S14-like isoform X1 n=2 Tax=... [more]
A0A2K1K459_PHYPA2.500e-4774.76Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
V4LDT2_EUTSA2.550e-4775.00Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
A0A8J5F6F0_ZINOF2.800e-4777.00Uncharacterized protein n=1 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104354contigM-pyrifera_M_contig104354:323..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score160.6
Seed ortholog evalue4e-37
Seed eggNOG ortholog3218.PP1S271_98V6.1
Preferred nameRPS14
KEGG koko:K02955
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070013,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the universal ribosomal protein uS11 family
EggNOG OGs37SRM@33090,3GCV6@35493,COG0100@1,KOG0407@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.377816-CDS-M-pyrifera_M_contig104354:322..6401622815550.377816-CDS-M-pyrifera_M_contig104354:322..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104354 323..640 +
1692277459.5681038-CDS-M-pyrifera_M_contig104354:322..6401692277459.5681038-CDS-M-pyrifera_M_contig104354:322..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104354 323..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104354.932.1prot_M-pyrifera_M_contig104354.932.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104354 323..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104354.932.1

>prot_M-pyrifera_M_contig104354.932.1 ID=prot_M-pyrifera_M_contig104354.932.1|Name=mRNA_M-pyrifera_M_contig104354.932.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
ATEAKVEENVTLGPSVKEGEQMFGVAHILASFNDTFIHLTDISGSETISR
VTGGMKVKADRDESSPYAAMLAAQDVAERAKAVGITAIHIKVRGTGGSRS
RALGPG
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mRNA from alignment at M-pyrifera_M_contig104354:323..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104354.932.1 ID=mRNA_M-pyrifera_M_contig104354.932.1|Name=mRNA_M-pyrifera_M_contig104354.932.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig104354:323..640+ (Macrocystis pyrifera P11B4 male)
GCTACAGAGGCAAAGGTTGAGGAGAATGTGACGTTGGGTCCCAGCGTGAA
GGAGGGGGAGCAGATGTTCGGGGTGGCTCACATTTTGGCGAGTTTCAACG
ACACGTTCATCCACTTGACCGACATTTCTGGCTCTGAGACGATCAGCCGC
GTGACTGGCGGCATGAAGGTGAAGGCGGACCGCGACGAGTCCTCCCCCTA
CGCAGCCATGCTGGCGGCGCAAGACGTGGCAGAGCGCGCCAAGGCCGTGG
GCATCACCGCCATCCACATCAAGGTGCGAGGCACCGGTGGCTCCCGCTCC
AGGGCGCTCGGCCCAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104354:323..640+

>mRNA_M-pyrifera_M_contig104354.932.1 ID=mRNA_M-pyrifera_M_contig104354.932.1|Name=mRNA_M-pyrifera_M_contig104354.932.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig104354:323..640+ (Macrocystis pyrifera P11B4 male)
GCTACAGAGGCAAAGGTTGAGGAGAATGTGACGTTGGGTCCCAGCGTGAA
GGAGGGGGAGCAGATGTTCGGGGTGGCTCACATTTTGGCGAGTTTCAACG
ACACGTTCATCCACTTGACCGACATTTCTGGCTCTGAGACGATCAGCCGC
GTGACTGGCGGCATGAAGGTGAAGGCGGACCGCGACGAGTCCTCCCCCTA
CGCAGCCATGCTGGCGGCGCAAGACGTGGCAGAGCGCGCCAAGGCCGTGG
GCATCACCGCCATCCACATCAAGGTGCGAGGCACCGGTGGCTCCCGCTCC
AGGGCGCTCGGCCCAGGAGCTACAGAGGCAAAGGTTGAGGAGAATGTGAC
GTTGGGTCCCAGCGTGAAGGAGGGGGAGCAGATGTTCGGGGTGGCTCACA
TTTTGGCGAGTTTCAACGACACGTTCATCCACTTGACCGACATTTCTGGC
TCTGAGACGATCAGCCGCGTGACTGGCGGCATGAAGGTGAAGGCGGACCG
CGACGAGTCCTCCCCCTACGCAGCCATGCTGGCGGCGCAAGACGTGGCAG
AGCGCGCCAAGGCCGTGGGCATCACCGCCATCCACATCAAGGTGCGAGGC
ACCGGTGGCTCCCGCTCCAGGGCGCTCGGCCCAGGA
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