mRNA_M-pyrifera_M_contig104340.927.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104340.927.1
Unique NamemRNA_M-pyrifera_M_contig104340.927.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A812I3F2_9DINO (Wdr92 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812I3F2_9DINO)

HSP 1 Score: 141 bits (355), Expect = 5.610e-39
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLS 267
            HLPQNRDVFATTGGNGG+NLY+Y YPL R +KD EG++ G MG VELLN+R+L+ QP+V WDW  DKEGLA A  LDQTVRV IVTKL+
Sbjct:  255 HLPQNRDVFATTGGNGGLNLYKYTYPLSRTRKDEEGRLAGVMGSVELLNSRILTPQPLVGWDWSPDKEGLAAAVALDQTVRVYIVTKLN 343
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A7S3PDB9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PDB9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.030e-36
Identity = 57/88 (64.77%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKL 264
            HLPQNRD+F TTGGNGG+N+Y+Y YP +R   D+EG+ +G  G VELLN++V+S+QP+VS+DW  DKEGLAV  CLDQTVR+ I TKL
Sbjct:   43 HLPQNRDIFLTTGGNGGMNVYKYCYPSQRQTTDSEGRPKGVAGSVELLNSKVISSQPVVSFDWSPDKEGLAVLACLDQTVRIFICTKL 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A7R9YGL7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGL7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.640e-36
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLSGF 273
            HLPQNRD++ T GGNGG+N+Y+Y YP  R K+  +G + GQ+G VELLN+RV+STQP+VS+DW  DKEGLA   CLDQTVRV++VTKL  +
Sbjct:  129 HLPQNRDIWVTGGGNGGLNIYKYHYPRSRTKQHKDGHLVGQLGDVELLNSRVISTQPVVSFDWSPDKEGLACLACLDQTVRVMLVTKLHKY 219
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A812XET9_9DINO (Wdr92 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812XET9_9DINO)

HSP 1 Score: 132 bits (332), Expect = 1.610e-35
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKL 264
            HLPQNRD+FATTGGNGG+NLYRY YP KR  KD EG  +G  G VELLN+RVLSTQP+VS DW  D  GLA A CLDQT+RV IVTKL
Sbjct:  260 HLPQNRDLFATTGGNGGLNLYRYSYPSKRTFKDEEGHYRGVAGSVELLNSRVLSTQPMVSLDWSRDMIGLACAACLDQTLRVYIVTKL 347
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: H3G9P3_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3G9P3_PHYRM)

HSP 1 Score: 129 bits (323), Expect = 3.860e-34
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    4 LPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLSGF 273
            LPQNRD+F T GGNGG NLY+Y YPL R  KDA+G++ G  G VELLN+RVLSTQPIVS DW  D+EGL    CLDQTVRV IVTK++ +
Sbjct:  267 LPQNRDLFMTGGGNGGFNLYKYHYPLSRTAKDADGRLYGVCGTVELLNSRVLSTQPIVSMDWSTDREGLCALACLDQTVRVYIVTKMNKY 356
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A2R5GM38_9STRA (WD repeat-containing protein 92 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM38_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.230e-34
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLS 267
            HLPQNRD+  TTGGNGG+NLY+Y YP +R  KDAEG+ +G  G V+LLN++++STQP+VS+DW+ DKEGL   +CLDQT+RV IVTKL+
Sbjct:  271 HLPQNRDIMMTTGGNGGLNLYKYVYPKQRQVKDAEGRPKGVPGSVDLLNSKIISTQPVVSFDWNLDKEGLCALSCLDQTLRVYIVTKLN 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A7S1C5M9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5M9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.370e-34
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLSGF 273
            HLPQNRD+F T GGNGG+N+Y+Y YP     KDAEG+  G +G VELLNARVL++QPIV++DW  DKEGLAVA  LDQTVRV IVTKL  +
Sbjct:  337 HLPQNRDIFMTAGGNGGLNIYKYSYPDTLTDKDAEGREVGNIGSVELLNARVLASQPIVAFDWSPDKEGLAVACALDQTVRVFIVTKLHKY 427
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: D7FY32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY32_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.110e-33
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLSGF 273
            HLPQNRD+F T GGNGG NLY+Y YP  R K D E    G +GKVELLN+RV+S+QPIVS+DW  D+EGL   +CLDQTVRV IVTKL  F
Sbjct:  266 HLPQNRDLFMTGGGNGGFNLYKYHYPSSRTKNDKENIPMGVVGKVELLNSRVISSQPIVSFDWSPDREGLCCLSCLDQTVRVYIVTKLGKF 356
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A7S0DX75_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DX75_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 6.130e-32
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKL 264
            HLPQNRDVF TTGGNG + L+RY YP  R  K+ +G  +G +G VELL  +  STQP+ S+DW+ DKEGLAV  CLDQTVRV++ TKL
Sbjct:   11 HLPQNRDVFMTTGGNGSLELWRYSYPQARKIKEKDGHEKGVLGTVELLQKKNFSTQPVASFDWNVDKEGLAVMGCLDQTVRVIVCTKL 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Match: A0A7S2AZ11_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZ11_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.700e-32
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNARVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLSGF 273
            HLPQNRD+F T GGNGG N+Y+Y YP  R     +    G  G VELLN+RV+STQPIVS+DW  DK+GL    CLDQT+RV IVTKL  +
Sbjct:   11 HLPQNRDLFMTGGGNGGFNVYKYSYPSARTTTAKDNHPMGVAGSVELLNSRVISTQPIVSFDWSPDKQGLCTLACLDQTLRVYIVTKLHKY 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104340.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812I3F2_9DINO5.610e-3971.91Wdr92 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S3PDB9_9STRA3.030e-3664.77Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7R9YGL7_9STRA8.640e-3662.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812XET9_9DINO1.610e-3572.73Wdr92 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A8... [more]
H3G9P3_PHYRM3.860e-3466.67Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
A0A2R5GM38_9STRA4.230e-3464.04WD repeat-containing protein 92 n=1 Tax=Hondaea fe... [more]
A0A7S1C5M9_9STRA6.370e-3467.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
D7FY32_ECTSI2.110e-3365.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0DX75_9EUKA6.130e-3261.36Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2AZ11_9STRA8.700e-3259.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104340contigM-pyrifera_M_contig104340:368..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog164328.Phyra71763
Preferred nameWDR92
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005955,GO:0006355,GO:0006357,GO:0007154,GO:0007165,GO:0008150,GO:0008287,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0019722,GO:0019904,GO:0019932,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032182,GO:0032991,GO:0033173,GO:0035556,GO:0043130,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048016,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0097720,GO:1902494,GO:1902680,GO:1903293,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.WD40 repeats
EggNOG OGs28J7X@1,2QRKB@2759,3QA2N@4776
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_006920.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.1407852-CDS-M-pyrifera_M_contig104340:367..6431622815550.1407852-CDS-M-pyrifera_M_contig104340:367..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104340 368..643 -
1692277459.4885962-CDS-M-pyrifera_M_contig104340:367..6431692277459.4885962-CDS-M-pyrifera_M_contig104340:367..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104340 368..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104340.927.1prot_M-pyrifera_M_contig104340.927.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104340 368..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104340.927.1

>prot_M-pyrifera_M_contig104340.927.1 ID=prot_M-pyrifera_M_contig104340.927.1|Name=mRNA_M-pyrifera_M_contig104340.927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
HLPQNRDVFATTGGNGGVNLYRYKYPLKRAKKDAEGKMQGQMGKVELLNA
RVLSTQPIVSWDWHHDKEGLAVATCLDQTVRVLIVTKLSGF*
back to top

mRNA from alignment at M-pyrifera_M_contig104340:368..643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104340.927.1 ID=mRNA_M-pyrifera_M_contig104340.927.1|Name=mRNA_M-pyrifera_M_contig104340.927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig104340:368..643- (Macrocystis pyrifera P11B4 male)
CACCTGCCCCAGAACAGGGACGTGTTCGCGACCACGGGGGGCAACGGAGG
CGTCAACCTGTACCGGTACAAGTACCCGCTGAAACGGGCCAAGAAGGACG
CCGAGGGCAAGATGCAAGGCCAGATGGGCAAGGTGGAGCTGCTCAACGCC
AGGGTGCTCTCCACGCAGCCCATCGTGTCCTGGGACTGGCACCACGACAA
GGAGGGCCTCGCAGTCGCAACCTGCCTCGACCAAACCGTCAGGGTCCTCA
TCGTCACAAAGCTATCAGGCTTTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104340:368..643-

>mRNA_M-pyrifera_M_contig104340.927.1 ID=mRNA_M-pyrifera_M_contig104340.927.1|Name=mRNA_M-pyrifera_M_contig104340.927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig104340:368..643- (Macrocystis pyrifera P11B4 male)
CACCTGCCCCAGAACAGGGACGTGTTCGCGACCACGGGGGGCAACGGAGG
CGTCAACCTGTACCGGTACAAGTACCCGCTGAAACGGGCCAAGAAGGACG
CCGAGGGCAAGATGCAAGGCCAGATGGGCAAGGTGGAGCTGCTCAACGCC
AGGGTGCTCTCCACGCAGCCCATCGTGTCCTGGGACTGGCACCACGACAA
GGAGGGCCTCGCAGTCGCAACCTGCCTCGACCAAACCGTCAGGGTCCTCA
TCGTCACAAAGCTATCAGGCTTTTGACACCTGCCCCAGAACAGGGACGTG
TTCGCGACCACGGGGGGCAACGGAGGCGTCAACCTGTACCGGTACAAGTA
CCCGCTGAAACGGGCCAAGAAGGACGCCGAGGGCAAGATGCAAGGCCAGA
TGGGCAAGGTGGAGCTGCTCAACGCCAGGGTGCTCTCCACGCAGCCCATC
GTGTCCTGGGACTGGCACCACGACAAGGAGGGCCTCGCAGTCGCAACCTG
CCTCGACCAAACCGTCAGGGTCCTCATCGTCACAAAGCTATCAGGCTTTT
GA
back to top