mRNA_M-pyrifera_M_contig104330.922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104330.922.1
Unique NamemRNA_M-pyrifera_M_contig104330.922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A364LBU2_9EURO (Uncharacterized protein n=1 Tax=Talaromyces amestolkiae TaxID=1196081 RepID=A0A364LBU2_9EURO)

HSP 1 Score: 58.9 bits (141), Expect = 4.980e-8
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   22 QATRGVALDGRDAN-GLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACESNNASA-AQTLIDHSADVNALSEDGWTPLHV 288
            + +R +  D  DA+   +PLH+ V  K  E++++ LL +G  D   R   G +ALH A    NA A  Q LID ++DVNA   DG TPL V
Sbjct:  807 KVSRNMWQDTSDASVSQSPLHIAVNAKDGERIVDILLKQGGADPNCRDGAGRTALHVAVARTNAEAITQLLIDSNSDVNAQDMDGKTPLLV 897          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A5N6FRX6_PETAA (Uncharacterized protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A5N6FRX6_PETAA)

HSP 1 Score: 56.2 bits (134), Expect = 4.160e-7
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   43 LDGRDANGLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSEDGWTPL 282
            L+  DANG  PL+      G    +++LL +G  +   R++  W+ALH+A E+ +A   Q L+DH AD+NA+S+ G TPL
Sbjct:  345 LNTLDANGEFPLY-NAAAGGCYDDVKRLLKQG-ANPSMRTRFQWTALHWAVENGHARVVQLLLDHGADINAVSDTGCTPL 422          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A2P8ZN57_BLAGE (Uncharacterized protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZN57_BLAGE)

HSP 1 Score: 54.3 bits (129), Expect = 2.020e-6
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 ACEEVLDQATRGVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSEDGWTPLHV 288
            +C+ +     RGV+++  D NG+ P+HL  +   SE V+    L   M+V  R+ TG + LHYA  S   + A+ L+   AD+NA+    + P H+
Sbjct:  395 SCKALKWLLARGVSMEKFDDNGILPIHLASEEGFSEIVVT--FLDHMMNVNARTSTGETPLHYAVYSKQDTVAELLLAKGADINAMDIYDYRPDHI 488          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A0N8ES75_AEDAE (Uncharacterized protein (Fragment) n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A0N8ES75_AEDAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-6
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   31 RGVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSEDGWTPL 282
            +G  ++ +  +G   LHL V+      V+E+LL+ G ++V  +   G+SALHYA +       Q L+ H ADVN+    G TP+
Sbjct:  452 QGADINVQTLDGETLLHLSVRCNNFA-VVEELLIMGCINVNDKDNAGFSALHYATKKGRFEFVQLLVKHGADVNSRKNAGPTPV 534          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: UPI000B8EC483 (serine/threonine-protein kinase TNNI3K-like n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=UPI000B8EC483)

HSP 1 Score: 52.4 bits (124), Expect = 8.740e-6
Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   34 GVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSEDGWTPLHV 288
            G  L+ +D +G   LH+     G+  ++ KL L     V  R+   W+ LH A  + +    + L+ + ADVNA+++DG + LHV
Sbjct:   61 GADLNVQDNSGRIVLHIAAGHSGNSSILLKLFLHHRSVVNTRNIDSWTPLHEAAYNGSVECMEVLVGNGADVNAVTDDGVSVLHV 145          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A2G5HTZ6_CERBT (Ankyrin-1 n=1 Tax=Cercospora beticola TaxID=122368 RepID=A0A2G5HTZ6_CERBT)

HSP 1 Score: 52.0 bits (123), Expect = 1.350e-5
Identity = 34/102 (33.33%), Postives = 48/102 (47.06%), Query Frame = 1
Query:    1 ACEEVLDQATRGVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACES-------NNASAAQTLIDHSADVNALSEDGWTPLH 285
            +  +++D   R +  D  DA G  PLH        + V  + LL  N     R   G   LH+ACE           + ++TL+ + ADVNA+ EDG TPLH
Sbjct:  419 SASDIIDNNVRDI--DTPDAMGRTPLHWACATGSLDFV--QALLEVNALPNSRDWAGMRPLHHACEGLAEVDSRTRVAVSETLLAYGADVNAVDEDGQTPLH 516          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A1Y2BUK0_9FUNG (Ankyrin (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BUK0_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 2.490e-5
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   64 GLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSE------DGWTPLHV 288
            G  PLHL   LKGS + + K+LL+   DV  R+ + W+ LH+A    N S A  L+DH A+V+ALS       D  TPL V
Sbjct:    1 GRTPLHLAA-LKGSIEAV-KILLKYGADVNARNNSNWTPLHWAI---NHSIALLLMDHGANVDALSANVDQICDYGTPLFV 76          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A2B4SD15_STYPI (Nuclear factor NF-kappa-B p105 subunit n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SD15_STYPI)

HSP 1 Score: 50.4 bits (119), Expect = 4.740e-5
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   13 VLDQATRGVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLRG-NMDVQQRSQTGWSALHYACESNNASAAQTLI-DHSADVNALSEDGWTPLHV 288
            +L+       L+ ++  GL P+HL V L GS+ V++ L   G NM  Q  + +G + LH+A E +N + A  LI + + DV+A++ DG TPLHV
Sbjct:  604 MLNYNVSKTVLNWQNYQGLTPVHLAV-LAGSKDVLKLLNSAGANMSAQDGT-SGKTPLHHAVEQDNLAVAGFLILEANCDVDAVTLDGNTPLHV 695          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: A0A0B4I4K5_METGA (Protein SSH4 n=2 Tax=Metarhizium TaxID=5529 RepID=A0A0B4I4K5_METGA)

HSP 1 Score: 50.4 bits (119), Expect = 4.770e-5
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    4 CEEVLDQATR-GVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLR------GNMDVQQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSEDGWTPLHV 288
            C E+  +    GV     D NG   LHL  + + +   I KLLL       GN D+  R+ +G +ALH A ES  + + Q L++H A+V+A++ +G    H+
Sbjct:   98 CTEIAHKLIEAGVDTALMDENGNMALHLSAEKQHTG--IMKLLLDKKYKHWGNFDINARNSSGKTALHLATESGKSLSVQLLLEHDANVDAVTPNGERAFHI 197          
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Match: UPI001EDEDB0E (uncharacterized protein LOC124190829 n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EDEDB0E)

HSP 1 Score: 50.4 bits (119), Expect = 4.870e-5
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   55 DANGLNPLHLMVQLKGSEKVIEKLLLRGNMDVQQRSQT-GWSALHYACESNNASAAQTLIDHSADVN-ALSEDGWTPLHV 288
            D NG  PL + V L    K+++ L+ RG +D+   + T G +ALH A +++N +AA+ L+   A+ N A  ++G TPLH+
Sbjct:  621 DNNGNTPLQVAVALHKDLKILDLLVERGKVDLNDSNNTPGDTALHMAIKTSNVTAARFLLSKGANPNVANKKNGVTPLHL 700          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104330.922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A364LBU2_9EURO4.980e-840.66Uncharacterized protein n=1 Tax=Talaromyces amesto... [more]
A0A5N6FRX6_PETAA4.160e-740.00Uncharacterized protein n=3 Tax=Aspergillus TaxID=... [more]
A0A2P8ZN57_BLAGE2.020e-633.33Uncharacterized protein n=1 Tax=Blattella germanic... [more]
A0A0N8ES75_AEDAE7.240e-634.52Uncharacterized protein (Fragment) n=1 Tax=Aedes a... [more]
UPI000B8EC4838.740e-631.76serine/threonine-protein kinase TNNI3K-like n=1 Ta... [more]
A0A2G5HTZ6_CERBT1.350e-533.33Ankyrin-1 n=1 Tax=Cercospora beticola TaxID=122368... [more]
A0A1Y2BUK0_9FUNG2.490e-543.21Ankyrin (Fragment) n=1 Tax=Rhizoclosmatium globosu... [more]
A0A2B4SD15_STYPI4.740e-538.30Nuclear factor NF-kappa-B p105 subunit n=2 Tax=Poc... [more]
A0A0B4I4K5_METGA4.770e-533.33Protein SSH4 n=2 Tax=Metarhizium TaxID=5529 RepID=... [more]
UPI001EDEDB0E4.870e-537.50uncharacterized protein LOC124190829 n=2 Tax=Daphn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104330contigM-pyrifera_M_contig104330:184..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.8246374-CDS-M-pyrifera_M_contig104330:183..4711622815549.8246374-CDS-M-pyrifera_M_contig104330:183..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104330 184..471 -
1692277459.2968464-CDS-M-pyrifera_M_contig104330:183..4711692277459.2968464-CDS-M-pyrifera_M_contig104330:183..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104330 184..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104330.922.1prot_M-pyrifera_M_contig104330.922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104330 184..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104330.922.1

>prot_M-pyrifera_M_contig104330.922.1 ID=prot_M-pyrifera_M_contig104330.922.1|Name=mRNA_M-pyrifera_M_contig104330.922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
ACEEVLDQATRGVALDGRDANGLNPLHLMVQLKGSEKVIEKLLLRGNMDV
QQRSQTGWSALHYACESNNASAAQTLIDHSADVNALSEDGWTPLHV
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mRNA from alignment at M-pyrifera_M_contig104330:184..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104330.922.1 ID=mRNA_M-pyrifera_M_contig104330.922.1|Name=mRNA_M-pyrifera_M_contig104330.922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig104330:184..471- (Macrocystis pyrifera P11B4 male)
GCTTGTGAGGAGGTTCTCGACCAGGCCACGAGGGGAGTGGCCCTTGACGG AAGGGACGCCAATGGTCTCAACCCACTGCATCTGATGGTGCAGTTGAAGG GCTCAGAGAAGGTGATCGAGAAGCTCCTGCTGCGCGGGAACATGGACGTG CAACAGCGGAGCCAGACTGGCTGGAGTGCCCTGCACTATGCGTGCGAGAG CAACAATGCCAGCGCGGCCCAAACGCTCATTGATCACAGTGCAGACGTGA ATGCGCTGTCAGAGGATGGCTGGACTCCACTCCACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104330:184..471-

>mRNA_M-pyrifera_M_contig104330.922.1 ID=mRNA_M-pyrifera_M_contig104330.922.1|Name=mRNA_M-pyrifera_M_contig104330.922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig104330:184..471- (Macrocystis pyrifera P11B4 male)
GCTTGTGAGGAGGTTCTCGACCAGGCCACGAGGGGAGTGGCCCTTGACGG
AAGGGACGCCAATGGTCTCAACCCACTGCATCTGATGGTGCAGTTGAAGG
GCTCAGAGAAGGTGATCGAGAAGCTCCTGCTGCGCGGGAACATGGACGTG
CAACAGCGGAGCCAGACTGGCTGGAGTGCCCTGCACTATGCGTGCGAGAG
CAACAATGCCAGCGCGGCCCAAACGCTCATTGATCACAGTGCAGACGTGA
ATGCGCTGTCAGAGGATGGCTGGACTCCACTCCACGTGGCTTGTGAGGAG
GTTCTCGACCAGGCCACGAGGGGAGTGGCCCTTGACGGAAGGGACGCCAA
TGGTCTCAACCCACTGCATCTGATGGTGCAGTTGAAGGGCTCAGAGAAGG
TGATCGAGAAGCTCCTGCTGCGCGGGAACATGGACGTGCAACAGCGGAGC
CAGACTGGCTGGAGTGCCCTGCACTATGCGTGCGAGAGCAACAATGCCAG
CGCGGCCCAAACGCTCATTGATCACAGTGCAGACGTGAATGCGCTGTCAG
AGGATGGCTGGACTCCACTCCACGTG
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