mRNA_M-pyrifera_M_contig104313.915.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A6L7YE01_9CHLR (MarR family transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7YE01_9CHLR) HSP 1 Score: 84.0 bits (206), Expect = 1.450e-16 Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 1 IRAGLYQPAQSHAANIVDTIVLT-VGQRTPGTLPARQLLVERGRGAVDDDQLVTAIFERLTLRPLDTVMARWFPGDPL--PDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASMAIHFQDAHAGS 366 +R GL PAQSHAANIVD+IVL+ G+R T R G DQL+ E LTL P+ + W+PG PD F+RHAT H VG G F+P + A+M+A S+ + F + A + Sbjct: 258 LRLGLIGPAQSHAANIVDSIVLSRFGKRGRATATRR---ASENLG----DQLLRQAAEHLTLLPIKRALTDWWPGGDAAPPDHFSRHATVHAVGCRGVFTPHSATIAIMLATSLTVQFASSGAAA 375
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A2W5ZEB5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=A0A2W5ZEB5_9BACT) HSP 1 Score: 83.2 bits (204), Expect = 1.860e-16 Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1 Query: 1 IRAGLYQPAQSHAANIVDTIVLTVGQRTPGTLPARQLLVERGRGAVD-DDQLVTAIFERLTLRPLDTVMARWFP--GDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASMAIHFQDAH 357 +RAG + PAQSHA NIVD+IV + + G A+Q R A D DD + E LTLRPL + W+P G+ P+ F RH TAH VG G F+P +L AVM+A S+ + + H Sbjct: 215 LRAGFHSPAQSHAGNIVDSIVSALHGKQ-GRDHAKQ------RAAEDFDDVPLQLAAESLTLRPLFRALTAWWPASGEAPPEHFARHTTAHAVGYVGVFAPLSALVAVMLATSLTVQYSSEH 329
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A429DZP8_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A429DZP8_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 1.640e-7 Identity = 33/114 (28.95%), Postives = 59/114 (51.75%), Query Frame = 1 Query: 10 GLYQPAQSHAANIVDTIVLTVGQRTPGTL------PARQLLVERGRGAVDDDQLVTAIFERLTLRPLDTVMARWFPGDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASM 333 G++ AQ+ AAN++DT++ + PG L P +++ DDD + + E P + ++ DP+P+ FNRHATAH A ++P +++ +M+A S+ Sbjct: 149 GMFSGAQALAANVLDTLIRGLTYANPGWLKPNGQWPGYAKVLKNIPVVEDDDATIRQLREAAAFLPFPKALEPFWASDPVPETFNRHATAHAAA-ATQYTPVNAVTGLMLAVSV 261
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A7W2YTF7_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. GMR22 TaxID=2759524 RepID=A0A7W2YTF7_9ACTN) HSP 1 Score: 54.7 bits (130), Expect = 5.860e-7 Identity = 33/114 (28.95%), Postives = 54/114 (47.37%), Query Frame = 1 Query: 10 GLYQPAQSHAANIVDTIVLTVGQRTPGTL------PARQLLVERGRGAVDDDQLVTAIFERLTLRPLDTVMARWFPGDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASM 333 G++ AQ+ AAN+ DT++ + G L P ++E DDD + E P + ++P DP+P FNRHATAH ++ +++AVM+ S+ Sbjct: 5 GMFNGAQALAANVWDTLIRGLAFANSGWLKPNGQWPGYAKVLENIPAVEDDDPTIRQFREAAAFLPFPQALKTFWPPDPVPQNFNRHATAHAAATT-QYTLVNAVTAVMLVVSV 117
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A4D4KT89_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A4D4KT89_9ACTN) HSP 1 Score: 55.5 bits (132), Expect = 1.530e-6 Identity = 33/114 (28.95%), Postives = 54/114 (47.37%), Query Frame = 1 Query: 10 GLYQPAQSHAANIVDTIVLTVGQRTP------GTLPARQLLVERGRGAVDDDQLVTAIFERLTLRPLDTVMARWFPGDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASM 333 G++ AQ+ AAN+ DT++ + P G ++E DDD + E P + ++P P+P FNRHATAH ++P +++AVM+A S+ Sbjct: 149 GMFSGAQALAANVWDTLIRGLAFANPEWLKPNGQWQGYPKVLENIPAVEDDDPTIRQFREAAAFLPFPQALKTFWPPTPVPQNFNRHATAHAAATT-QYTPVNAVTAVMLAVSV 261
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: UPI0004CBD6E0 (hypothetical protein n=1 Tax=Streptomyces rimosus TaxID=1927 RepID=UPI0004CBD6E0) HSP 1 Score: 55.5 bits (132), Expect = 1.560e-6 Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 1 Query: 10 GLYQPAQSHAANIVDTIVLTVGQRTPGTLPARQLL-----VERGRGAVDDDQLVTAIFERLTLRPLDTVMARWFPGDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASM 333 G++ AQ+ AAN+ DT+V + PG L Q L +E DD+ + + E P + ++ P+P+ FNRHATAH A ++P +++ +M+A S+ Sbjct: 155 GMFNGAQALAANVWDTLVRGLAYANPGWLQNGQRLSYTKVLENIPAVEDDNATIRQLREAAAFLPFPRALEPFWAPAPVPETFNRHATAHAAA-ATQYTPVNAVTGIMLAVSV 266
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A117QM21_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces longwoodensis TaxID=68231 RepID=A0A117QM21_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 2.100e-6 Identity = 34/114 (29.82%), Postives = 58/114 (50.88%), Query Frame = 1 Query: 10 GLYQPAQSHAANIVDTIVLTVGQRTPGTL-PARQL-----LVERGRGAVDDDQLVTAIFERLTLRPLDTVMARWFPGDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASM 333 G++ AQ+ AAN+ DT++ + PG L P RQ +++ DDD + E P + ++P P+P+ FNRHATAH ++P +++ +M+A S+ Sbjct: 149 GMFSGAQALAANVWDTLIRGLAFANPGWLRPNRQWSGYAKVLDNIPVVDDDDPTIRQFREAAAFLPFPRALEPFWPPAPVPEHFNRHATAHAAATT-QYTPVNAVTGIMLAVSV 261
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Match: A0A1L6PC46_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. Tue 6075 TaxID=1661694 RepID=A0A1L6PC46_9ACTN) HSP 1 Score: 51.6 bits (122), Expect = 3.630e-5 Identity = 34/123 (27.64%), Postives = 61/123 (49.59%), Query Frame = 1 Query: 1 IRAGLYQPAQSHAANIVDTIVLTVGQRTPGTLPARQLL----VERGRGAVD--DDQLVTAIFERLTLRPLDTVMARWFPGDPLPDGFNRHATAHCVGNAGAFSPEFSLSAVMIAASMAIHFQD 351 I G++ AQ+ AAN+ DT++ + P L ++ + R +VD +D + + P+ V+ ++ P+P GFNRHATAH G ++ +++A+M+A S+ D Sbjct: 148 IENGMFNSAQALAANVWDTLMRGIAFANPDLLTSKGTWNYRHIRRNVPSVDAEEDATLGELRRAAVFLPVAKVLEDFWHPQPVPFGFNRHATAHAAGTV-QYTASNAMTALMLAVSVLREIDD 269 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104313.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig104313.915.1 >prot_M-pyrifera_M_contig104313.915.1 ID=prot_M-pyrifera_M_contig104313.915.1|Name=mRNA_M-pyrifera_M_contig104313.915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp IRAGLYQPAQSHAANIVDTIVLTVGQRTPGTLPARQLLVERGRGAVDDDQback to top mRNA from alignment at M-pyrifera_M_contig104313:272..643- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig104313.915.1 ID=mRNA_M-pyrifera_M_contig104313.915.1|Name=mRNA_M-pyrifera_M_contig104313.915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig104313:272..643- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig104313:272..643- >mRNA_M-pyrifera_M_contig104313.915.1 ID=mRNA_M-pyrifera_M_contig104313.915.1|Name=mRNA_M-pyrifera_M_contig104313.915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig104313:272..643- (Macrocystis pyrifera P11B4 male)back to top |