mRNA_M-pyrifera_M_contig1043.913.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1043.913.1
Unique NamemRNA_M-pyrifera_M_contig1043.913.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1043.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1043contigM-pyrifera_M_contig1043:27584..28008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.3542242-CDS-M-pyrifera_M_contig1043:27583..279131622815549.3542242-CDS-M-pyrifera_M_contig1043:27583..27913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1043 27584..27913 +
1692277459.1327274-CDS-M-pyrifera_M_contig1043:27583..279131692277459.1327274-CDS-M-pyrifera_M_contig1043:27583..27913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1043 27584..27913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.3663769-UTR-M-pyrifera_M_contig1043:27913..280081622815549.3663769-UTR-M-pyrifera_M_contig1043:27913..28008Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1043 27914..28008 +
1692277459.1412542-UTR-M-pyrifera_M_contig1043:27913..280081692277459.1412542-UTR-M-pyrifera_M_contig1043:27913..28008Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1043 27914..28008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1043.913.1prot_M-pyrifera_M_contig1043.913.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1043 27584..27913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1043.913.1

>prot_M-pyrifera_M_contig1043.913.1 ID=prot_M-pyrifera_M_contig1043.913.1|Name=mRNA_M-pyrifera_M_contig1043.913.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
TYRTQRLESTDRTTNNHASTNRALVPRGPGDQAHYDLYRPNQRGRIEGSN
RRIESTDQPNGSNPRIETQPITHHATSCLARLSQTSASTARNLGSTHPVF
GEIDPNRVS*
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mRNA from alignment at M-pyrifera_M_contig1043:27584..28008+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1043.913.1 ID=mRNA_M-pyrifera_M_contig1043.913.1|Name=mRNA_M-pyrifera_M_contig1043.913.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=425bp|location=Sequence derived from alignment at M-pyrifera_M_contig1043:27584..28008+ (Macrocystis pyrifera P11B4 male)
ACATATCGAACCCAACGTCTCGAATCAACGGATCGAACGACAAACAATCA
CGCATCAACGAACCGAGCTCTGGTCCCGAGAGGTCCGGGCGATCAAGCCC
ACTACGACCTCTATAGACCAAACCAACGGGGTCGAATCGAAGGATCGAAT
CGACGGATCGAATCAACGGATCAACCCAACGGATCGAATCCACGCATCGA
AACACAACCAATCACGCATCACGCGACCTCTTGTTTAGCGAGGCTTAGCC
AAACAAGTGCATCGACCGCCAGGAATCTCGGGTCAACCCACCCTGTATTC
GGAGAGATTGACCCGAATAGAGTCAGTTAACCATCTCGGATGATCAACGG
ATGAAGACCGACGGACAGGCCAATCGTGCGTCAACCAACTCACACCCAAA
AGATATTAAGGCGATTATCCTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1043:27584..28008+

>mRNA_M-pyrifera_M_contig1043.913.1 ID=mRNA_M-pyrifera_M_contig1043.913.1|Name=mRNA_M-pyrifera_M_contig1043.913.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig1043:27584..28008+ (Macrocystis pyrifera P11B4 male)
ACATATCGAACCCAACGTCTCGAATCAACGGATCGAACGACAAACAATCA
CGCATCAACGAACCGAGCTCTGGTCCCGAGAGGTCCGGGCGATCAAGCCC
ACTACGACCTCTATAGACCAAACCAACGGGGTCGAATCGAAGGATCGAAT
CGACGGATCGAATCAACGGATCAACCCAACGGATCGAATCCACGCATCGA
AACACAACCAATCACGCATCACGCGACCTCTTGTTTAGCGAGGCTTAGCC
AAACAAGTGCATCGACCGCCAGGAATCTCGGGTCAACCCACCCTGTATTC
GGAGAGATTGACCCGAATAGAGTCAGTTAAACATATCGAACCCAACGTCT
CGAATCAACGGATCGAACGACAAACAATCACGCATCAACGAACCGAGCTC
TGGTCCCGAGAGGTCCGGGCGATCAAGCCCACTACGACCTCTATAGACCA
AACCAACGGGGTCGAATCGAAGGATCGAATCGACGGATCGAATCAACGGA
TCAACCCAACGGATCGAATCCACGCATCGAAACACAACCAATCACGCATC
ACGCGACCTCTTGTTTAGCGAGGCTTAGCCAAACAAGTGCATCGACCGCC
AGGAATCTCGGGTCAACCCACCCTGTATTCGGAGAGATTGACCCGAATAG
AGTCAGTTAA
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