mRNA_M-pyrifera_M_contig104223.908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104223.908.1
Unique NamemRNA_M-pyrifera_M_contig104223.908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A2U1RML4_9BACT (PMT_2 domain-containing protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A2U1RML4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.510e-7
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            AL+L+LF +RTV RN DWRDE+ L+   V+T P + +A NNLG   + RG
Sbjct:  447 ALVLVLFSLRTVTRNTDWRDELTLWRKTVQTAPQSARARNNLGAAYLRRG 496
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A2A6CDX0_PRIPA (Dolichyl-phosphate-mannose--protein mannosyltransferase n=4 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6CDX0_PRIPA)

HSP 1 Score: 54.3 bits (129), Expect = 1.890e-6
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRGMGD 159
            A+LL L   RTVARNE+W D+VRLF+S V+ +P   KA  NLG  L  RG  D
Sbjct:  426 AVLLSLLAARTVARNEEWSDDVRLFDSAVDINP--AKAFANLGHVLARRGRSD 476
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A5A9NY43_9TELE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=3 Tax=Cypriniformes TaxID=7952 RepID=A0A5A9NY43_9TELE)

HSP 1 Score: 51.6 bits (122), Expect = 1.660e-5
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            A L+LLFGI+TV RN DWR+E  L++SG+  +P   KA  NLG  L ++G
Sbjct:  461 AALVLLFGIKTVLRNRDWRNEEMLYKSGISVNP--AKAWGNLGNVLKNQG 508
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A7C3IS96_9PROT (Dolichyl-phosphate-mannose--protein mannosyltransferase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C3IS96_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 2.240e-5
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 LLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            L++LL  IRTVARN+DW++ + L+E  V+T P   +A NNLG++   RG
Sbjct:  429 LVILLCSIRTVARNQDWKNALTLWEKTVKTAPECARAWNNLGVEYYRRG 477
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A6J2WRN5_CHACN (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2WRN5_CHACN)

HSP 1 Score: 51.2 bits (121), Expect = 2.270e-5
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            A+L+LLFGI+TV RN+DW++E  L++SG+  +P   KA  NLG  L ++G
Sbjct:  464 AVLVLLFGIKTVLRNQDWQNEEMLYKSGITVNP--AKAWGNLGNVLKNQG 511
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A444UCR6_ACIRT (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UCR6_ACIRT)

HSP 1 Score: 50.8 bits (120), Expect = 3.060e-5
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            A L+LL+GI+TV RN+DW+DE  L++SG+  +P   KA  NLG  L  +G
Sbjct:  350 ATLVLLYGIKTVLRNQDWQDEEMLYKSGINVNP--AKAWGNLGNVLKSQG 397
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: UPI001B7F68BF (protein O-mannosyl-transferase TMTC2-like isoform X2 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7F68BF)

HSP 1 Score: 50.8 bits (120), Expect = 3.080e-5
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            A L+LL+GI+TV RN+DW+DE  L++SG+  +P   KA  NLG  L  +G
Sbjct:  467 ATLVLLYGIKTVLRNQDWQDEEMLYKSGINVNP--AKAWGNLGNVLKSQG 514
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BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: UPI001B7DB4B2 (protein O-mannosyl-transferase TMTC2-like isoform X2 n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7DB4B2)

HSP 1 Score: 50.8 bits (120), Expect = 3.080e-5
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            A L+LL+GI+TV RN+DW+DE  L++SG+  +P   KA  NLG  L  +G
Sbjct:  467 ATLVLLYGIKTVLRNQDWQDEEMLYKSGINVNP--AKAWGNLGNVLKSQG 514
[Close]
BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A087XW03_POEFO (Dolichyl-phosphate-mannose--protein mannosyltransferase n=2 Tax=Poecilia TaxID=8080 RepID=A0A087XW03_POEFO)

HSP 1 Score: 50.8 bits (120), Expect = 3.100e-5
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    7 LLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRGMGD 159
            LLLLFG++TVARN+DW++E  L++SG+  +P   KA  NLG  L  +G  D
Sbjct:  461 LLLLFGMKTVARNQDWQNEEMLYKSGIYVNP--AKAWGNLGNVLKSQGKMD 509
[Close]
BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Match: A0A673GJF6_9TELE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=34 Tax=Cyprinidae TaxID=7953 RepID=A0A673GJF6_9TELE)

HSP 1 Score: 50.8 bits (120), Expect = 3.100e-5
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG 150
            A+L+LLFGI+TV RN DW++E  L++SG+  +P   KA  NLG  L ++G
Sbjct:  461 AVLVLLFGIKTVLRNRDWQNEEMLYKSGISVNP--AKAWGNLGNVLKNQG 508
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104223.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U1RML4_9BACT1.510e-752.00PMT_2 domain-containing protein n=1 Tax=candidate ... [more]
A0A2A6CDX0_PRIPA1.890e-654.72Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A5A9NY43_9TELE1.660e-552.00Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A7C3IS96_9PROT2.240e-548.98Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A6J2WRN5_CHACN2.270e-550.00Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A444UCR6_ACIRT3.060e-550.00Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
UPI001B7F68BF3.080e-550.00protein O-mannosyl-transferase TMTC2-like isoform ... [more]
UPI001B7DB4B23.080e-550.00protein O-mannosyl-transferase TMTC2-like isoform ... [more]
A0A087XW03_POEFO3.100e-550.98Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A673GJF6_9TELE3.100e-550.00Dolichyl-phosphate-mannose--protein mannosyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104223contigM-pyrifera_M_contig104223:75..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.14066-CDS-M-pyrifera_M_contig104223:74..3531622815549.14066-CDS-M-pyrifera_M_contig104223:74..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104223 75..353 +
1692277459.0716496-CDS-M-pyrifera_M_contig104223:74..3531692277459.0716496-CDS-M-pyrifera_M_contig104223:74..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104223 75..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104223.908.1prot_M-pyrifera_M_contig104223.908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104223 75..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104223.908.1

>prot_M-pyrifera_M_contig104223.908.1 ID=prot_M-pyrifera_M_contig104223.908.1|Name=mRNA_M-pyrifera_M_contig104223.908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
ALLLLLFGIRTVARNEDWRDEVRLFESGVETHPYNIKALNNLGLKLMHRG
MGDDWERSTGLLARGLRMWPHQAAAWHNLGLVLMKQGRRKEAV
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mRNA from alignment at M-pyrifera_M_contig104223:75..353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104223.908.1 ID=mRNA_M-pyrifera_M_contig104223.908.1|Name=mRNA_M-pyrifera_M_contig104223.908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig104223:75..353+ (Macrocystis pyrifera P11B4 male)
GCTCTGCTGTTGTTGTTGTTTGGCATTCGCACGGTGGCGAGGAACGAGGA
TTGGAGGGACGAGGTGCGTTTGTTCGAGAGCGGGGTGGAAACACACCCCT
ACAACATCAAGGCGCTGAATAATTTGGGCCTCAAGCTGATGCATCGCGGG
ATGGGAGACGATTGGGAGAGGAGTACGGGATTGCTGGCAAGAGGATTGCG
CATGTGGCCGCACCAAGCAGCGGCATGGCACAATTTGGGGCTCGTGCTCA
TGAAGCAAGGGAGGAGAAAAGAAGCGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104223:75..353+

>mRNA_M-pyrifera_M_contig104223.908.1 ID=mRNA_M-pyrifera_M_contig104223.908.1|Name=mRNA_M-pyrifera_M_contig104223.908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig104223:75..353+ (Macrocystis pyrifera P11B4 male)
GCTCTGCTGTTGTTGTTGTTTGGCATTCGCACGGTGGCGAGGAACGAGGA
TTGGAGGGACGAGGTGCGTTTGTTCGAGAGCGGGGTGGAAACACACCCCT
ACAACATCAAGGCGCTGAATAATTTGGGCCTCAAGCTGATGCATCGCGGG
ATGGGAGACGATTGGGAGAGGAGTACGGGATTGCTGGCAAGAGGATTGCG
CATGTGGCCGCACCAAGCAGCGGCATGGCACAATTTGGGGCTCGTGCTCA
TGAAGCAAGGGAGGAGAAAAGAAGCGGTTGCTCTGCTGTTGTTGTTGTTT
GGCATTCGCACGGTGGCGAGGAACGAGGATTGGAGGGACGAGGTGCGTTT
GTTCGAGAGCGGGGTGGAAACACACCCCTACAACATCAAGGCGCTGAATA
ATTTGGGCCTCAAGCTGATGCATCGCGGGATGGGAGACGATTGGGAGAGG
AGTACGGGATTGCTGGCAAGAGGATTGCGCATGTGGCCGCACCAAGCAGC
GGCATGGCACAATTTGGGGCTCGTGCTCATGAAGCAAGGGAGGAGAAAAG
AAGCGGTT
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