mRNA_M-pyrifera_M_contig10422.907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10422.907.1
Unique NamemRNA_M-pyrifera_M_contig10422.907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10422.907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10422contigM-pyrifera_M_contig10422:8707..9088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size382
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.0864844-UTR-M-pyrifera_M_contig10422:8706..87581622815549.0864844-UTR-M-pyrifera_M_contig10422:8706..8758Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10422 8707..8758 +
1692277459.044516-UTR-M-pyrifera_M_contig10422:8706..87581692277459.044516-UTR-M-pyrifera_M_contig10422:8706..8758Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10422 8707..8758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.1003423-CDS-M-pyrifera_M_contig10422:8758..90881622815549.1003423-CDS-M-pyrifera_M_contig10422:8758..9088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10422 8759..9088 +
1692277459.0597658-CDS-M-pyrifera_M_contig10422:8758..90881692277459.0597658-CDS-M-pyrifera_M_contig10422:8758..9088Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10422 8759..9088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10422.907.1prot_M-pyrifera_M_contig10422.907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10422 8759..9088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10422.907.1

>prot_M-pyrifera_M_contig10422.907.1 ID=prot_M-pyrifera_M_contig10422.907.1|Name=mRNA_M-pyrifera_M_contig10422.907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MLFVCPIRTPRSRIKNVAFFEQKSRATAVGGAATVTPLSGSLQLKSSLHD
HQKHNLEKNKIAPSDKQSQLLHSRITDRAVEYIWNSFILDSFSVEEPRQS
KNVQGCARVG
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mRNA from alignment at M-pyrifera_M_contig10422:8707..9088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10422.907.1 ID=mRNA_M-pyrifera_M_contig10422.907.1|Name=mRNA_M-pyrifera_M_contig10422.907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=382bp|location=Sequence derived from alignment at M-pyrifera_M_contig10422:8707..9088+ (Macrocystis pyrifera P11B4 male)
CATTCACAAAATTTAGGCAACCTCCTTCTCCTAGGAGCTCCTCCGCCTTT
CCATGTTGTTCGTCTGTCCCATCCGAACCCCCCGTTCACGAATAAAAAAT
GTAGCCTTTTTCGAACAAAAGAGCCGTGCCACTGCTGTAGGGGGGGCAGC
TACTGTAACACCTCTTTCAGGTTCCTTGCAGTTGAAGAGCTCTTTACATG
ATCACCAAAAACACAATCTTGAGAAAAACAAAATCGCGCCATCCGATAAA
CAATCCCAATTGCTACATAGTCGTATCACAGACAGGGCGGTAGAATACAT
ATGGAATTCCTTTATATTGGACAGTTTCTCGGTTGAGGAACCTCGTCAGT
CAAAAAATGTCCAGGGCTGTGCACGGGTCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10422:8707..9088+

>mRNA_M-pyrifera_M_contig10422.907.1 ID=mRNA_M-pyrifera_M_contig10422.907.1|Name=mRNA_M-pyrifera_M_contig10422.907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig10422:8707..9088+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTCGTCTGTCCCATCCGAACCCCCCGTTCACGAATAAAAAATGT
AGCCTTTTTCGAACAAAAGAGCCGTGCCACTGCTGTAGGGGGGGCAGCTA
CTGTAACACCTCTTTCAGGTTCCTTGCAGTTGAAGAGCTCTTTACATGAT
CACCAAAAACACAATCTTGAGAAAAACAAAATCGCGCCATCCGATAAACA
ATCCCAATTGCTACATAGTCGTATCACAGACAGGGCGGTAGAATACATAT
GGAATTCCTTTATATTGGACAGTTTCTCGGTTGAGGAACCTCGTCAGTCA
AAAAATGTCCAGGGCTGTGCACGGGTCGGGATGTTGTTCGTCTGTCCCAT
CCGAACCCCCCGTTCACGAATAAAAAATGTAGCCTTTTTCGAACAAAAGA
GCCGTGCCACTGCTGTAGGGGGGGCAGCTACTGTAACACCTCTTTCAGGT
TCCTTGCAGTTGAAGAGCTCTTTACATGATCACCAAAAACACAATCTTGA
GAAAAACAAAATCGCGCCATCCGATAAACAATCCCAATTGCTACATAGTC
GTATCACAGACAGGGCGGTAGAATACATATGGAATTCCTTTATATTGGAC
AGTTTCTCGGTTGAGGAACCTCGTCAGTCAAAAAATGTCCAGGGCTGTGC
ACGGGTCGGG
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