mRNA_M-pyrifera_M_contig104204.900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104204.900.1
Unique NamemRNA_M-pyrifera_M_contig104204.900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A7S1C5A7_9STRA (Importin subunit alpha n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5A7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.680e-31
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQ 318
            N+ GD   +RD +L  E A+  LVLN+ HP+SLS+LRNATWTLSN CRGKP P++     ML  L  LL++ D+EV+ D  W+LSY+SDGDD RIQ VID   VP+
Sbjct:  225 NIAGDGHRFRDMVLDQEDAINNLVLNIAHPSSLSMLRNATWTLSNFCRGKPQPSIEAAQEMLPVLVHLLNSTDAEVLTDTCWALSYLSDGDDERIQQVIDFRAVPR 330
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A482S0N4_9ARCH (IBB domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0N4_9ARCH)

HSP 1 Score: 119 bits (299), Expect = 2.870e-29
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNE-DSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLV 324
            N+ GD +  RDAIL  E+A+  L+ N+  PASLSLLRN TWTLSN CRGKP  +L  +   L  L  L+ N+ D + +ADAAW+LSYISDGDD RIQAV+D   VP+LV
Sbjct:  179 NIAGDGAVLRDAILA-ENAMPALLANIAQPASLSLLRNCTWTLSNFCRGKPQSSLDKVGAALPALAHLIMNQPDPDTIADAAWALSYISDGDDKRIQAVVDLGVVPRLV 286
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: UPI00053A70B9 (importin subunit alpha-6-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A70B9)

HSP 1 Score: 115 bits (287), Expect = 1.840e-27
Identity = 57/110 (51.82%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLVVL 330
            NV GD    RD +L  + A+  L+      + LSLLRNATWTLSN CRGKP PA+   TP L  L +LLH+ D EV+ DA+W+LSY+SDG + +IQ VID+  +P+LV+L
Sbjct:  188 NVAGDSPRCRDHVLGCD-AMMSLLAQFNEHSKLSLLRNATWTLSNFCRGKPQPAIEQTTPALPVLERLLHSTDEEVLTDASWALSYLSDGSNEKIQTVIDSGVIPRLVLL 296
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A6S7N7T2_LACSI (Uncharacterized protein n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7N7T2_LACSI)

HSP 1 Score: 110 bits (276), Expect = 2.820e-27
Identity = 56/110 (50.91%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLVVL 330
            NV GD  +  D +L  + A+  L+  +   A LS+LRNATWTLSN CRGKP P+ S   P L  L QL+H+ D EV+ DA W+LSY+SDG + +IQAVI+A+  P+LV L
Sbjct:   49 NVAGDFPKCHDLVLA-QGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPSFSQTKPALPDLQQLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEANVCPRLVEL 157
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A5N5K457_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5K457_9ROSI)

HSP 1 Score: 108 bits (271), Expect = 1.620e-26
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQL 321
            NV GD    RD +L    A+  L+  +   A LS+LRNATWTLSN CRGKP P+   + P L  L +L+H+ D EV+ DA W+LSY+SDG + +IQAVI+A   P+L
Sbjct:   46 NVAGDSPRCRDLVL-GHGALLSLLAQLNENAKLSMLRNATWTLSNFCRGKPQPSFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 151
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: UPI00053A4E60 (importin subunit alpha-6 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A4E60)

HSP 1 Score: 114 bits (286), Expect = 4.620e-26
Identity = 58/110 (52.73%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLVVL 330
            NV GD    RD +L  + A+  L+      + LSLLRNATWTLSN CRGKP PA+   TP L  L +LLH+ D EV+ DA+W+LSY+SDG + +IQ VID+  +P+LVVL
Sbjct:  188 NVAGDSPICRDHVLGCD-AMMSLLAQFNEHSKLSLLRNATWTLSNFCRGKPQPAIEQTTPALPVLERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDSGVIPRLVVL 296
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A1Q3DH27_CEPFO (Arm domain-containing protein/IBB domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DH27_CEPFO)

HSP 1 Score: 113 bits (282), Expect = 4.790e-26
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLV 324
            NV GD  +Y+D I+    A+  L+  +   A LS+LRNATWTLSNLCRG+P P    + P L  L +L+H+ D EV+ADA W+LSY+SDG + RIQAVI+A   P+LV
Sbjct:  180 NVAGDSPQYQD-IVPGHGALLPLLAQLNEHAKLSMLRNATWTLSNLCRGRPQPQFEQVKPSLPALERLIHSTDEEVLADACWALSYLSDGTNDRIQAVIEAGVCPRLV 286
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A7S2BTP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BTP8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.070e-26
Identity = 52/110 (47.27%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLVVL 330
            N+ GD +E RD ++Q   A++ L+ NV  PAS S+LRN  W LSNLCRGKP P +  + P +  L   L++ED+E++ D  W+LSY+SDGD+ R++AV+ ++ VP+LV L
Sbjct:  189 NIAGDCAELRDFVIQS-GAMQPLLQNVIQPASNSMLRNTIWALSNLCRGKPQPKMETVAPAIPVLAATLNSEDTEILVDCCWALSYLSDGDNERVEAVVQSNVVPRLVQL 297
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: W7TTB3_9STRA (Importin subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTB3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.760e-26
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLL-HNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLV 324
            NV GD  E RD +LQ   A++ L+ NV  PAS S+LRN  W+LSNLCRGKP P + LL P L  L Q+L  + D E + D AW+LSYISDGD ARIQAV+DAD    LV
Sbjct:  193 NVSGDCPELRDMVLQ-HGALRPLLQNVLAPASESMLRNCIWSLSNLCRGKPQPHVDLLRPALPVLAQVLASSSDPECLQDTAWALSYISDGDGARIQAVLDADVASDLV 300
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BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Match: A0A498HNX2_MALDO (IBB domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498HNX2_MALDO)

HSP 1 Score: 108 bits (269), Expect = 6.800e-26
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    1 NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGKPAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVIDADTVPQLVVL 330
            NV GD    RD +L +  A+  L+  +   A LS+LRNATWTLSN CRGKP P    + P L  L +L+H+ D EV+ DA W+LSY+SDG + +IQAVI++   P+LV L
Sbjct:   45 NVAGDSPRCRDLVLGN-GALLPLLSQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIESGVCPRLVEL 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104204.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C5A7_9STRA1.680e-3155.66Importin subunit alpha n=1 Tax=Bicosoecida sp. CB-... [more]
A0A482S0N4_9ARCH2.870e-2956.88IBB domain-containing protein (Fragment) n=1 Tax=a... [more]
UPI00053A70B91.840e-2751.82importin subunit alpha-6-like n=1 Tax=Camelina sat... [more]
A0A6S7N7T2_LACSI2.820e-2750.91Uncharacterized protein n=1 Tax=Lactuca saligna Ta... [more]
A0A5N5K457_9ROSI1.620e-2649.53Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
UPI00053A4E604.620e-2652.73importin subunit alpha-6 n=2 Tax=Camelina sativa T... [more]
A0A1Q3DH27_CEPFO4.790e-2651.85Arm domain-containing protein/IBB domain-containin... [more]
A0A7S2BTP8_9STRA6.070e-2647.27Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TTB3_9STRA6.760e-2656.88Importin subunit alpha n=2 Tax=Monodopsidaceae Tax... [more]
A0A498HNX2_MALDO6.800e-2649.09IBB domain-containing protein n=1 Tax=Malus domest... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104204contigM-pyrifera_M_contig104204:2..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score113.2
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog90675.XP_010501290.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
EggNOG free text desc.importin subunit
EggNOG OGs37HJI@33090,3GAGW@35493,COG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.696763-CDS-M-pyrifera_M_contig104204:1..6401622815548.696763-CDS-M-pyrifera_M_contig104204:1..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104204 2..640 +
1692277458.8964105-CDS-M-pyrifera_M_contig104204:1..6401692277458.8964105-CDS-M-pyrifera_M_contig104204:1..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104204 2..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104204.900.1prot_M-pyrifera_M_contig104204.900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104204 2..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104204.900.1

>prot_M-pyrifera_M_contig104204.900.1 ID=prot_M-pyrifera_M_contig104204.900.1|Name=mRNA_M-pyrifera_M_contig104204.900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
NVGGDRSEYRDAILQDESAVKGLVLNVQHPASLSLLRNATWTLSNLCRGK
PAPALSLLTPMLQPLTQLLHNEDSEVVADAAWSLSYISDGDDARIQAVID
ADTVPQLVVLLGHAESSVVTPALRCIGNVVSGTHEQTQAVLDMGALHALV
PLLRAGKRTTRKEACWALSNVAAGTQSQIAALVNWPGAVASLVEIVQSDE
WDVRKEGAWALSN
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mRNA from alignment at M-pyrifera_M_contig104204:2..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104204.900.1 ID=mRNA_M-pyrifera_M_contig104204.900.1|Name=mRNA_M-pyrifera_M_contig104204.900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=639bp|location=Sequence derived from alignment at M-pyrifera_M_contig104204:2..640+ (Macrocystis pyrifera P11B4 male)
AACGTGGGCGGCGACCGGAGCGAGTACCGCGACGCTATCCTGCAGGACGA
GTCGGCGGTGAAGGGCCTGGTGCTGAACGTGCAGCACCCGGCGTCTCTCT
CCCTGCTGCGCAACGCCACGTGGACGCTGAGCAACCTGTGCCGCGGCAAG
CCGGCGCCGGCGCTGTCGCTCCTGACCCCGATGCTGCAGCCGCTGACGCA
GCTGCTGCACAACGAGGATTCCGAGGTGGTGGCCGACGCCGCCTGGTCGC
TGTCCTACATCAGCGACGGCGACGACGCGCGCATCCAGGCGGTCATCGAC
GCGGACACGGTGCCGCAGCTGGTGGTGCTGCTCGGCCACGCCGAGTCGTC
CGTCGTCACGCCTGCGCTTCGCTGCATCGGCAACGTGGTCAGCGGCACGC
ACGAGCAGACGCAGGCGGTGCTGGACATGGGAGCGCTGCACGCGCTGGTG
CCGCTGCTGCGCGCTGGCAAGCGCACCACGCGCAAGGAGGCGTGCTGGGC
GCTGAGCAACGTGGCGGCGGGGACGCAGTCGCAGATCGCCGCGCTGGTGA
ACTGGCCGGGTGCGGTGGCGTCGCTGGTGGAGATCGTGCAGTCTGACGAG
TGGGACGTGCGCAAGGAGGGGGCGTGGGCGCTGAGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104204:2..640+

>mRNA_M-pyrifera_M_contig104204.900.1 ID=mRNA_M-pyrifera_M_contig104204.900.1|Name=mRNA_M-pyrifera_M_contig104204.900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig104204:2..640+ (Macrocystis pyrifera P11B4 male)
AACGTGGGCGGCGACCGGAGCGAGTACCGCGACGCTATCCTGCAGGACGA
GTCGGCGGTGAAGGGCCTGGTGCTGAACGTGCAGCACCCGGCGTCTCTCT
CCCTGCTGCGCAACGCCACGTGGACGCTGAGCAACCTGTGCCGCGGCAAG
CCGGCGCCGGCGCTGTCGCTCCTGACCCCGATGCTGCAGCCGCTGACGCA
GCTGCTGCACAACGAGGATTCCGAGGTGGTGGCCGACGCCGCCTGGTCGC
TGTCCTACATCAGCGACGGCGACGACGCGCGCATCCAGGCGGTCATCGAC
GCGGACACGGTGCCGCAGCTGGTGGTGCTGCTCGGCCACGCCGAGTCGTC
CGTCGTCACGCCTGCGCTTCGCTGCATCGGCAACGTGGTCAGCGGCACGC
ACGAGCAGACGCAGGCGGTGCTGGACATGGGAGCGCTGCACGCGCTGGTG
CCGCTGCTGCGCGCTGGCAAGCGCACCACGCGCAAGGAGGCGTGCTGGGC
GCTGAGCAACGTGGCGGCGGGGACGCAGTCGCAGATCGCCGCGCTGGTGA
ACTGGCCGGGTGCGGTGGCGTCGCTGGTGGAGATCGTGCAGTCTGACGAG
TGGGACGTGCGCAAGGAGGGGGCGTGGGCGCTGAGCAACAACGTGGGCGG
CGACCGGAGCGAGTACCGCGACGCTATCCTGCAGGACGAGTCGGCGGTGA
AGGGCCTGGTGCTGAACGTGCAGCACCCGGCGTCTCTCTCCCTGCTGCGC
AACGCCACGTGGACGCTGAGCAACCTGTGCCGCGGCAAGCCGGCGCCGGC
GCTGTCGCTCCTGACCCCGATGCTGCAGCCGCTGACGCAGCTGCTGCACA
ACGAGGATTCCGAGGTGGTGGCCGACGCCGCCTGGTCGCTGTCCTACATC
AGCGACGGCGACGACGCGCGCATCCAGGCGGTCATCGACGCGGACACGGT
GCCGCAGCTGGTGGTGCTGCTCGGCCACGCCGAGTCGTCCGTCGTCACGC
CTGCGCTTCGCTGCATCGGCAACGTGGTCAGCGGCACGCACGAGCAGACG
CAGGCGGTGCTGGACATGGGAGCGCTGCACGCGCTGGTGCCGCTGCTGCG
CGCTGGCAAGCGCACCACGCGCAAGGAGGCGTGCTGGGCGCTGAGCAACG
TGGCGGCGGGGACGCAGTCGCAGATCGCCGCGCTGGTGAACTGGCCGGGT
GCGGTGGCGTCGCTGGTGGAGATCGTGCAGTCTGACGAGTGGGACGTGCG
CAAGGAGGGGGCGTGGGCGCTGAGCAAC
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