mRNA_M-pyrifera_M_contig104202.899.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104202.899.1
Unique NamemRNA_M-pyrifera_M_contig104202.899.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104202.899.1 vs. uniprot
Match: A0A7S4HXD2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HXD2_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.900e-21
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:    1 PCCGQPCNSSDGVYCCLSWFPCCCLAAPKCYAASQNQECAVINHCVPFLGLLLSIIPIIGGILSFAVYCAIRTAIRFNLRKQHGIGQD---------ECDLCDCCGIWFYVPAPCFSCQELRSVPKESWD 363
            PCCG+PCN  DG+YCC+ W+ C      K +A+   Q CA +NHC+P +     II  I G L           +R+N R + G+ +          +C L  CC     + APC  CQ+LR+VP+  WD
Sbjct:   30 PCCGEPCNFMDGLYCCMCWWCCSPCLTAKYWASQVEQPCACVNHCLPLI-----IIYFISGYLMNIPVIMFNMMLRYNARLEAGVFETPDTIDKYVGDCFLPCCC-----LTAPCAGCQQLRAVPRSHWD 149
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BLAST of mRNA_M-pyrifera_M_contig104202.899.1 vs. uniprot
Match: A0A7S4IVY7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IVY7_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 3.350e-19
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:    1 PCCGQPCNSSDGVYCCLSWFPCCCLAAPKCYAASQNQECAVINHCVP-FLGLLLSIIPIIGGILSFAVYCAIRTAIRFNLRKQHGIGQD---------ECDLCDCCGIWFYVPAPCFSCQELRSVPKESWD 363
            PCCG PCN  DG+YCC+ W+ C      K +A+   Q CA +NHC+P FL  LLS   +   ++ F +       +R+N R + G+ +          +C L  CC     + APC  CQ+LR+VPK  WD
Sbjct:   29 PCCGDPCNFVDGLYCCMCWWCCSLCVFSKYWASQVEQPCACVNHCLPVFLIYLLSEYLLNIPVILFNMM------LRYNARLEAGVYETPDTIDKYIGDCFLPCCC-----LTAPCALCQQLRAVPKSHWD 148
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BLAST of mRNA_M-pyrifera_M_contig104202.899.1 vs. uniprot
Match: L8GHB2_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHB2_ACACA)

HSP 1 Score: 79.0 bits (193), Expect = 3.250e-16
Identity = 42/128 (32.81%), Postives = 59/128 (46.09%), Query Frame = 1 
Query:    1 PCCGQPCNSSDGVYCCLSWFPCCCLAAPKCYAASQNQECAVINHCVPFLGLLLSIIPIIGGILSFAVYCAIRTAIRFNLRKQHGIGQDECD------LCD-CCGIWFYVPAPCFSCQELRSVPKESWD 363
            PCCG PCN +DG+YCC +W+ C      K +A +  Q+C  INH +P                +F   C +   +R NLR + G+G+D+         C  CCGI       C   Q +R+  K  WD
Sbjct:   23 PCCGDPCNFNDGLYCCFTWYCCTPCNLSKLWAHTLEQDCQFINHFIP----------------TFLFSCIVGPIVRHNLRLKAGVGEDDAANWIGDFFCAWCCGI-------CTVAQFMRTTSKSDWD 127
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BLAST of mRNA_M-pyrifera_M_contig104202.899.1 vs. uniprot
Match: L8GHZ6_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHZ6_ACACA)

HSP 1 Score: 58.5 bits (140), Expect = 6.790e-9
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 PCCGQPCNSSDGVYCCLSWFPCCCLAAPKCYAASQNQECAVINHCVP 141
            PCCG PCN +DG+YCC +W+ C      K +A +  Q+C  INH +P
Sbjct:   23 PCCGDPCNFNDGLYCCFTWYCCTPCNLSKLWAHTLEQDCQFINHFIP 69
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104202.899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4HXD2_9EUKA1.900e-2136.15Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4IVY7_9EUKA3.350e-1937.40Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8GHB2_ACACA3.250e-1632.81Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
L8GHZ6_ACACA6.790e-946.81Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104202contigM-pyrifera_M_contig104202:3..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.6543508-CDS-M-pyrifera_M_contig104202:2..3651622815548.6543508-CDS-M-pyrifera_M_contig104202:2..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104202 3..365 +
1692277458.8866518-CDS-M-pyrifera_M_contig104202:2..3651692277458.8866518-CDS-M-pyrifera_M_contig104202:2..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104202 3..365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104202.899.1prot_M-pyrifera_M_contig104202.899.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104202 3..365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104202.899.1

>prot_M-pyrifera_M_contig104202.899.1 ID=prot_M-pyrifera_M_contig104202.899.1|Name=mRNA_M-pyrifera_M_contig104202.899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
PCCGQPCNSSDGVYCCLSWFPCCCLAAPKCYAASQNQECAVINHCVPFLG
LLLSIIPIIGGILSFAVYCAIRTAIRFNLRKQHGIGQDECDLCDCCGIWF
YVPAPCFSCQELRSVPKESWD
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mRNA from alignment at M-pyrifera_M_contig104202:3..365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104202.899.1 ID=mRNA_M-pyrifera_M_contig104202.899.1|Name=mRNA_M-pyrifera_M_contig104202.899.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig104202:3..365+ (Macrocystis pyrifera P11B4 male)
CCGTGCTGCGGCCAGCCCTGCAACTCCTCGGACGGTGTCTACTGCTGCCT
GTCGTGGTTCCCCTGCTGCTGCCTTGCGGCGCCCAAGTGCTACGCCGCCT
CGCAGAACCAGGAGTGCGCCGTGATCAACCACTGCGTGCCCTTCCTCGGA
CTGCTGCTCTCCATCATCCCCATCATCGGTGGTATCCTTTCTTTCGCCGT
CTACTGCGCCATCCGCACCGCCATCCGCTTCAACCTGCGCAAGCAGCACG
GAATTGGCCAGGATGAGTGCGACCTCTGCGATTGCTGCGGTATCTGGTTC
TACGTCCCCGCCCCTTGCTTCTCGTGCCAGGAGCTCCGCTCTGTCCCCAA
GGAGAGCTGGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104202:3..365+

>mRNA_M-pyrifera_M_contig104202.899.1 ID=mRNA_M-pyrifera_M_contig104202.899.1|Name=mRNA_M-pyrifera_M_contig104202.899.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig104202:3..365+ (Macrocystis pyrifera P11B4 male)
CCGTGCTGCGGCCAGCCCTGCAACTCCTCGGACGGTGTCTACTGCTGCCT
GTCGTGGTTCCCCTGCTGCTGCCTTGCGGCGCCCAAGTGCTACGCCGCCT
CGCAGAACCAGGAGTGCGCCGTGATCAACCACTGCGTGCCCTTCCTCGGA
CTGCTGCTCTCCATCATCCCCATCATCGGTGGTATCCTTTCTTTCGCCGT
CTACTGCGCCATCCGCACCGCCATCCGCTTCAACCTGCGCAAGCAGCACG
GAATTGGCCAGGATGAGTGCGACCTCTGCGATTGCTGCGGTATCTGGTTC
TACGTCCCCGCCCCTTGCTTCTCGTGCCAGGAGCTCCGCTCTGTCCCCAA
GGAGAGCTGGGATCCGTGCTGCGGCCAGCCCTGCAACTCCTCGGACGGTG
TCTACTGCTGCCTGTCGTGGTTCCCCTGCTGCTGCCTTGCGGCGCCCAAG
TGCTACGCCGCCTCGCAGAACCAGGAGTGCGCCGTGATCAACCACTGCGT
GCCCTTCCTCGGACTGCTGCTCTCCATCATCCCCATCATCGGTGGTATCC
TTTCTTTCGCCGTCTACTGCGCCATCCGCACCGCCATCCGCTTCAACCTG
CGCAAGCAGCACGGAATTGGCCAGGATGAGTGCGACCTCTGCGATTGCTG
CGGTATCTGGTTCTACGTCCCCGCCCCTTGCTTCTCGTGCCAGGAGCTCC
GCTCTGTCCCCAAGGAGAGCTGGGAT
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