mRNA_M-pyrifera_M_contig104048.863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104048.863.1
Unique NamemRNA_M-pyrifera_M_contig104048.863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0BPD0_PARTE (TPH domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BPD0_PARTE)

HSP 1 Score: 71.2 bits (173), Expect = 4.260e-11
Identity = 47/122 (38.52%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  208 LRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESVAKVEEEE 573
            L  +AA  M E +DDVK MN+M+ YAKCV +RD+Q+ EK++ I + K +E R  ++ME++RL+ +K H+  ++Q++  ++    +I  QI+ERE  R +  E++ RE + ML+ + ++++EE
Sbjct:  105 LLARAAEIMNEQMDDVKEMNKMVMYAKCVTVRDKQLYEKKELINQYKVQEKRKDLMMEIERLKSIKYHEEKDKQRKVEQKQGHDIIIEQIKERELIRLKDKEEQEREGQVMLKKIKQLQQEE 226          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0A1S8VF88_9FUNG (TPH domain-containing protein (Fragment) n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VF88_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 9.780e-11
Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1
Query:  208 LRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESVAKVEEEEK 576
            L  KA + + E  DD+K MN++M YAKCV+IRD QVEEK+    E+KEEE+R   +MELDR+ +LK+ +  E+++ E  R  A+ I  QIEER        E + +E +++L ++A+  E+EK
Sbjct:  123 LLSKAQMQIEEQEDDIKHMNELMLYAKCVSIRDTQVEEKKYIQNERKEEEARLDAMMELDRVTELKKLEENEKRRVEELRKGAAKIRHQIEERHEASLLDQERRDQETKQILRAIAETAEQEK 245          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0A0V0QHB8_PSEPJ (TPH domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QHB8_PSEPJ)

HSP 1 Score: 70.1 bits (170), Expect = 1.090e-10
Identity = 49/122 (40.16%), Postives = 83/122 (68.03%), Query Frame = 1
Query:  208 LRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESVAKVEEEE 573
            L +KA     E LDDVK MN+M+ Y KCV IRD+Q+EEK++ I E+K EE R  +++E++RL++++ ++  E+ K+E++      I  QI+ERE  R +  E++ RE  +M++++  +E+EE
Sbjct:  135 LLQKAEEIQNEQLDDVKEMNKMVNYVKCVTIRDKQLEEKKEIIDEKKREEKRKDLMLEIERLKKIQYYEELEKAKKEQQIKGHKKIIEQIKERELIRLREKEEQEREGTQMIKAIKTLEKEE 256          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0DJN6_PARTE (TPH domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DJN6_PARTE)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-10
Identity = 44/115 (38.26%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  208 LRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESV 552
            L  +A+  M E +DDVK MN+M+ YAKCV +RD+Q++EK++   + K +E R  ++ME++RL+ +K H+  ++Q++  ++H   +I  QI+ERE  R +  E++ RE + ML+ +
Sbjct:  126 LLARASEIMNEQMDDVKEMNKMVMYAKCVTVRDKQLKEKKELHEQYKVQEKRKDLMMEIERLKSIKYHEEKDKQRKVEQKHGHDIIIEQIKERELIRLKDKEEQEREGQVMLKQI 240          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0A7S1W7E1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1W7E1_NEODS)

HSP 1 Score: 68.9 bits (167), Expect = 2.630e-10
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  202 AVLRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESV 552
            AV R+K    M E  D+VK MNQ+M YAKCV +RD Q+ EK+    E  EEE R  + MEL+RL+ L+ ++  E+++ E R+  ASVI  QIEERE+ R + +E K++E   ML+ +
Sbjct:   88 AVSRKK----MDEEFDEVKYMNQVMLYAKCVTVRDAQILEKQSIKAETAEEERRMDMAMELERLKALRMYEEREQKRIEDRKKGASVIRAQIEEREQERLRRIELKQQEQEAMLQHI 200          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0A7S0VDS1_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VDS1_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-10
Identity = 55/161 (34.16%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   10 QRMLHSTKIKTEEDVAAERREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERER 492
            +RML  T I T ED+A  +REA                                             R +A   M E  DDVK MNQM+ Y+KCV IRD Q+EEK++ + E +EE+ R  V+ME++R++ L ++   ERQ+ E R   A V+  QI +R+R
Sbjct:   57 ERMLKPTPIMTSEDIAFAKREAQANRDKLQAVSKARKEKMMKLEEEAKKQIPMTETELIKRQTDDSTRSRAQNLMMEQKDDVKRMNQMILYSKCVTIRDAQIEEKKQMLLESEEEQRRLDVMMEVERIKALDQYSERERQRHEERLKGARVLEEQIRDRQR 217          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0A7S0DAJ1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DAJ1_MICPS)

HSP 1 Score: 68.2 bits (165), Expect = 5.120e-10
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 1
Query:  211 RRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEER 486
            R KA V M E +D+VK MNQMM Y+KCV IRD Q+EEK+    E +EEE R  + ME++R++ L  ++A E  +RE R   A+V+  QIE+R
Sbjct:  166 RNKAEVLMDEAMDEVKNMNQMMLYSKCVTIRDAQLEEKKHIKAEAQEEERRMDLAMEIERIKALDEYEAREAARREARLAGAAVLMKQIEDR 257          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0EHE4_PARTE (TPH domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0EHE4_PARTE)

HSP 1 Score: 68.2 bits (165), Expect = 5.560e-10
Identity = 45/122 (36.89%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  208 LRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESVAKVEEEE 573
            L  +AA  M E +DDVK MN+M+ YAKCV +RD+Q++EK+  + + K +E R  ++ME++RL+ +K H+  ++Q++   +    +I  QI+ERE  R +  E++ R+ + ML+ + ++++EE
Sbjct:  382 LLARAAEIMNEQMDDVKEMNKMVMYAKCVTVRDKQLKEKKDLVDQYKVQEKRKDLMMEIERLKSIKYHEEKDKQRKVELKQGHDIIIEQIKERELVRLKDKEEQERDGQVMLKKIKQLQQEE 503          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0A507DRT8_9FUNG (TPH domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DRT8_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 6.710e-10
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  208 LRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRR 525
            L  KA   + E  DD+K +N+++ YAKCVAIRD Q+EEK+    E+K E+SR   +ME DR+ +LK+ +  E+ + E +R  AS+I  QIEER+   +Q++E++R+
Sbjct:  114 LLAKAHAQLDEQEDDIKKLNELILYAKCVAIRDAQIEEKKMISTEKKMEQSRLDTLMEADRVNELKKLEEREKLRVEEQRKGASIIRKQIEERQE--QQILEEERK 217          
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Match: A0E1H6_PARTE (TPH domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E1H6_PARTE)

HSP 1 Score: 67.4 bits (163), Expect = 8.940e-10
Identity = 44/112 (39.29%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  238 ETLDDVKAMNQMMEYAKCVAIRDQQVEEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVITVQIEERERRRKQVMEDKRREAREMLESVAKVEEEE 573
            E +DDVK MN+M+ YAKCV IRD+Q++EK++   + K +E R  ++ME++RLR +K H+  +++++++  H   +I  QI+ERE  R +  E++ RE + ML+ + ++++EE
Sbjct:  100 EQIDDVKEMNKMVMYAKCVTIRDKQLQEKKELYDQYKMQEKRKDLMMEIERLRAIKYHEEKDQKQKQQLIHGHEIIIEQIKERELIRLKEKEEQEREGQIMLKQIKQLQQEE 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104048.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0BPD0_PARTE4.260e-1138.52TPH domain-containing protein n=1 Tax=Paramecium t... [more]
A0A1S8VF88_9FUNG9.780e-1143.09TPH domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A0V0QHB8_PSEPJ1.090e-1040.16TPH domain-containing protein n=1 Tax=Pseudocohnil... [more]
A0DJN6_PARTE1.470e-1038.26TPH domain-containing protein n=2 Tax=Paramecium t... [more]
A0A7S1W7E1_NEODS2.630e-1045.30Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A7S0VDS1_9CHLO3.670e-1034.16Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A7S0DAJ1_MICPS5.120e-1048.91Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0EHE4_PARTE5.560e-1036.89TPH domain-containing protein n=1 Tax=Paramecium t... [more]
A0A507DRT8_9FUNG6.710e-1043.40TPH domain-containing protein n=1 Tax=Synchytrium ... [more]
A0E1H6_PARTE8.940e-1039.29TPH domain-containing protein n=2 Tax=Paramecium t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104048contigM-pyrifera_M_contig104048:3..646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue6.6e-11
Seed eggNOG ortholog5762.XP_002677033.1
Preferred nameCFAP45
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.Trichohyalin-plectin-homology domain
EggNOG OGs2C0KR@1,2QPRZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size576
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104048.863.1prot_M-pyrifera_M_contig104048.863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104048 18..646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.7941923-UTR-M-pyrifera_M_contig104048:2..171622815546.7941923-UTR-M-pyrifera_M_contig104048:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104048 3..17 +
1692277458.0966141-UTR-M-pyrifera_M_contig104048:2..171692277458.0966141-UTR-M-pyrifera_M_contig104048:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104048 3..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.8074-CDS-M-pyrifera_M_contig104048:17..3261622815546.8074-CDS-M-pyrifera_M_contig104048:17..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104048 18..326 +
1692277458.11071-CDS-M-pyrifera_M_contig104048:17..3261692277458.11071-CDS-M-pyrifera_M_contig104048:17..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104048 18..326 +
1622815546.820858-CDS-M-pyrifera_M_contig104048:394..6461622815546.820858-CDS-M-pyrifera_M_contig104048:394..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104048 395..646 +
1692277458.1240685-CDS-M-pyrifera_M_contig104048:394..6461692277458.1240685-CDS-M-pyrifera_M_contig104048:394..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104048 395..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104048.863.1

>prot_M-pyrifera_M_contig104048.863.1 ID=prot_M-pyrifera_M_contig104048.863.1|Name=mRNA_M-pyrifera_M_contig104048.863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
MLHSTKIKTEEDVAAERREAGRRQEERLRAARERKARMLRLEQERRRSAP
PSKREQEKAAALAVLRRKAAVDMYETLDDVKAMNQMMEYAKCVAIRDQQV
EEKEKRIREQKEEESRDAVIMELDRLRQLKRHDAAERQKRERRRHDASVI
TVQIEERERRRKQVMEDKRREAREMLESVAKVEEEEK
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mRNA from alignment at M-pyrifera_M_contig104048:3..646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104048.863.1 ID=mRNA_M-pyrifera_M_contig104048.863.1|Name=mRNA_M-pyrifera_M_contig104048.863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=644bp|location=Sequence derived from alignment at M-pyrifera_M_contig104048:3..646+ (Macrocystis pyrifera P11B4 male)
TCGCAGCTGCAGCGCATGCTGCACTCGACGAAAATCAAGACGGAGGAGGA CGTTGCGGCGGAGCGGCGCGAGGCGGGGCGGCGTCAGGAGGAGCGTCTGC GTGCCGCACGTGAGCGCAAGGCACGCATGCTGCGCCTGGAGCAGGAGCGG CGTCGGAGCGCGCCTCCGTCGAAGCGCGAACAGGAAAAGGCGGCTGCGCT GGCTGTTCTTCGGCGCAAGGCGGCGGTCGACATGTACGAGACGCTTGACG ACGTCAAAGCGATGAACCAGATGATGGAGTACGCCAAGTGTGTGGCTATT CGGGATCAGCAGGTGGAGGAGAAGGTGAGCGGGTGAATGGGAGTTGTGCG ATGTGTTGTGTGTTCTCGCTGACGCACCGTGTGCGTGAACAGGAGAAGCG CATCCGCGAGCAGAAGGAGGAGGAGTCGCGCGATGCGGTGATCATGGAGC TGGACCGTCTGCGCCAGCTGAAGAGGCACGACGCGGCGGAGCGGCAGAAG CGCGAGCGGCGGCGGCACGATGCGTCGGTGATCACGGTACAGATTGAGGA GCGTGAGCGTCGGCGCAAGCAGGTGATGGAGGATAAGCGGAGGGAGGCAC GGGAGATGTTGGAGAGCGTGGCAAAGGTGGAGGAGGAGGAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104048:3..646+

>mRNA_M-pyrifera_M_contig104048.863.1 ID=mRNA_M-pyrifera_M_contig104048.863.1|Name=mRNA_M-pyrifera_M_contig104048.863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig104048:3..646+ (Macrocystis pyrifera P11B4 male)
ATGCTGCACTCGACGAAAATCAAGACGGAGGAGGACGTTGCGGCGGAGCG
GCGCGAGGCGGGGCGGCGTCAGGAGGAGCGTCTGCGTGCCGCACGTGAGC
GCAAGGCACGCATGCTGCGCCTGGAGCAGGAGCGGCGTCGGAGCGCGCCT
CCGTCGAAGCGCGAACAGGAAAAGGCGGCTGCGCTGGCTGTTCTTCGGCG
CAAGGCGGCGGTCGACATGTACGAGACGCTTGACGACGTCAAAGCGATGA
ACCAGATGATGGAGTACGCCAAGTGTGTGGCTATTCGGGATCAGCAGGTG
GAGGAGAAGATGCTGCACTCGACGAAAATCAAGACGGAGGAGGACGTTGC
GGCGGAGCGGCGCGAGGCGGGGCGGCGTCAGGAGGAGCGTCTGCGTGCCG
CACGTGAGCGCAAGGCACGCATGCTGCGCCTGGAGCAGGAGCGGCGTCGG
AGCGCGCCTCCGTCGAAGCGCGAACAGGAAAAGGCGGCTGCGCTGGCTGT
TCTTCGGCGCAAGGCGGCGGTCGACATGTACGAGACGCTTGACGACGTCA
AAGCGATGAACCAGATGATGGAGTACGCCAAGTGTGTGGCTATTCGGGAT
CAGCAGGTGGAGGAGAAGGAGAAGCGCATCCGCGAGCAGAAGGAGGAGGA
GTCGCGCGATGCGGTGATCATGGAGCTGGACCGTCTGCGCCAGCTGAAGA
GGCACGACGCGGCGGAGCGGCAGAAGCGCGAGCGGCGGCGGCACGATGCG
TCGGTGATCACGGTACAGATTGAGGAGCGTGAGCGTCGGCGCAAGCAGGT
GATGGAGGATAAGCGGAGGGAGGCACGGGAGATGTTGGAGAGCGTGGCAA
AGGTGGAGGAGGAGGAGAAGGAGAAGCGCATCCGCGAGCAGAAGGAGGAG
GAGTCGCGCGATGCGGTGATCATGGAGCTGGACCGTCTGCGCCAGCTGAA
GAGGCACGACGCGGCGGAGCGGCAGAAGCGCGAGCGGCGGCGGCACGATG
CGTCGGTGATCACGGTACAGATTGAGGAGCGTGAGCGTCGGCGCAAGCAG
GTGATGGAGGATAAGCGGAGGGAGGCACGGGAGATGTTGGAGAGCGTGGC
AAAGGTGGAGGAGGAGGAGAAG
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